protein modification by small protein conjugation or removal
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RING_2 | PF13639 | 182 - 225 | 1.2e-13 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 183 - 224 | 1.6e-09 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4 | PF00097 | 183 - 224 | 5.6e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_11 | PF17123 | 183 - 211 | 7.7e-08 | RING-like zinc finger |
| zf-rbx1 | PF12678 | 186 - 225 | 4.6e-08 | RING-H2 zinc finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 510 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 26 |
| AccII | CGCG | 1 cut(s) | 369 |
| AciI | CCGC | 3 cut(s) | 37, 56, 479 |
| AclI | AACGTT | 1 cut(s) | 522 |
| AclWI | GGATC | 1 cut(s) | 586 |
| AcoI | YGGCCR | 1 cut(s) | 381 |
| AcsI | RAATTY | 1 cut(s) | 614 |
| AcyI | GRCGYC | 1 cut(s) | 336 |
| AgsI | TTSAA | 3 cut(s) | 428, 520, 726 |
| AhlI | ACTAGT | 1 cut(s) | 278 |
| AjnI | CCWGG | 1 cut(s) | 39 |
| AluBI | AGCT | 5 cut(s) | 70, 168, 330, 476, 501 |
| AluI | AGCT | 5 cut(s) | 70, 168, 330, 476, 501 |
| Alw21I | GWGCWC | 1 cut(s) | 80 |
| Alw26I | GTCTC | 2 cut(s) | 34, 110 |
| Alw44I | GTGCAC | 1 cut(s) | 76 |
| AlwI | GGATC | 1 cut(s) | 586 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 504 |
| AoxI | GGCC | 1 cut(s) | 381 |
| ApaLI | GTGCAC | 1 cut(s) | 76 |
| ApeKI | GCWGC | 3 cut(s) | 327, 351, 476 |
| ApoI | RAATTY | 1 cut(s) | 614 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 31, 206, 238 |
| AspLEI | GCGC | 2 cut(s) | 369, 551 |
| AsuC2I | CCSGG | 1 cut(s) | 703 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 103, 331 |
| AxyI | CCTNAGG | 1 cut(s) | 687 |
| BaeGI | GKGCMC | 1 cut(s) | 80 |
| BalI | TGGCCA | 1 cut(s) | 383 |
| Bbv12I | GWGCWC | 1 cut(s) | 80 |
| BbvI | GCAGC | 3 cut(s) | 338, 339, 463 |
| BccI | CCATC | 1 cut(s) | 158 |
| BceAI | ACGGC | 1 cut(s) | 364 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 67, 101 |
| BciT130I | CCWGG | 1 cut(s) | 41 |
| BciVI | GTATCC | 1 cut(s) | 196 |
| BclI | TGATCA | 1 cut(s) | 607 |
| BcnI | CCSGG | 1 cut(s) | 703 |
| BcoDI | GTCTC | 2 cut(s) | 34, 110 |
| BcuI | ACTAGT | 1 cut(s) | 278 |
| BfaI | CTAG | 1 cut(s) | 279 |
| BfmI | CTRYAG | 1 cut(s) | 22 |
| BfuI | GTATCC | 1 cut(s) | 196 |
| BisI | GCNGC | 3 cut(s) | 328, 352, 477 |
| BlsI | GCNGC | 3 cut(s) | 329, 353, 478 |
| Bme1390I | CCNGG | 2 cut(s) | 41, 703 |
| BmrFI | CCNGG | 2 cut(s) | 41, 703 |
| BmsI | GCATC | 2 cut(s) | 536, 639 |
| BpmI | CTGGAG | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 1 cut(s) | 343 |
| BpuMI | CCSGG | 1 cut(s) | 703 |
| BsaHI | GRCGYC | 1 cut(s) | 336 |
| BsaJI | CCNNGG | 1 cut(s) | 619 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 473, 503 |
| Bse118I | RCCGGY | 1 cut(s) | 113 |
| Bse21I | CCTNAGG | 1 cut(s) | 687 |
| BseBI | CCWGG | 1 cut(s) | 41 |
| BseDI | CCNNGG | 1 cut(s) | 619 |
| BseGI | GGATG | 2 cut(s) | 551, 697 |
| BseMII | CTCAG | 1 cut(s) | 444 |
| BseRI | GAGGAG | 2 cut(s) | 432, 551 |
| BseSI | GKGCMC | 1 cut(s) | 80 |
| BseXI | GCAGC | 3 cut(s) | 338, 339, 463 |
| Bsh1236I | CGCG | 1 cut(s) | 369 |
| BshFI | GGCC | 1 cut(s) | 383 |
| BsiHKAI | GWGCWC | 1 cut(s) | 80 |
| BsiSI | CCGG | 2 cut(s) | 114, 702 |
| BslFI | GGGAC | 2 cut(s) | 225, 648 |
| BsmAI | GTCTC | 2 cut(s) | 34, 110 |
| BsmBI | CGTCTC | 1 cut(s) | 110 |
| BsmFI | GGGAC | 2 cut(s) | 225, 648 |
| BsnI | GGCC | 1 cut(s) | 383 |
| Bsp1286I | GDGCHC | 1 cut(s) | 80 |
| Bsp143I | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| Bsp19I | CCATGG | 1 cut(s) | 619 |
| BspACI | CCGC | 3 cut(s) | 37, 56, 479 |
| BspANI | GGCC | 1 cut(s) | 383 |
| BspCNI | CTCAG | 1 cut(s) | 445 |
| BspFNI | CGCG | 1 cut(s) | 369 |
| BspHI | TCATGA | 1 cut(s) | 610 |
| BspPI | GGATC | 1 cut(s) | 586 |
| BsrFI | RCCGGY | 1 cut(s) | 113 |
| BssAI | RCCGGY | 1 cut(s) | 113 |
| BssECI | CCNNGG | 1 cut(s) | 619 |
| BssMI | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| BssNI | GRCGYC | 1 cut(s) | 336 |
| BssT1I | CCWWGG | 1 cut(s) | 619 |
| Bst2UI | CCWGG | 1 cut(s) | 41 |
| Bst4CI | ACNGT | 4 cut(s) | 26, 64, 256, 506 |
| Bst6I | CTCTTC | 1 cut(s) | 113 |
| BstACI | GRCGYC | 1 cut(s) | 336 |
| BstDEI | CTNAG | 3 cut(s) | 296, 453, 687 |
| BstDSI | CCRYGG | 1 cut(s) | 619 |
| BstF5I | GGATG | 2 cut(s) | 551, 697 |
| BstFNI | CGCG | 1 cut(s) | 369 |
| BstHHI | GCGC | 2 cut(s) | 369, 551 |
| BstKTI | GATC | 6 cut(s) | 375, 447, 495, 581, 610, 677 |
| BstMAI | GTCTC | 2 cut(s) | 34, 110 |
| BstMBI | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 333, 473, 555 |
| BstNI | CCWGG | 1 cut(s) | 41 |
| BstSCI | CCNGG | 2 cut(s) | 39, 701 |
| BstSFI | CTRYAG | 1 cut(s) | 22 |
| BstSLI | GKGCMC | 1 cut(s) | 80 |
| BstUI | CGCG | 1 cut(s) | 369 |
| BstV1I | GCAGC | 3 cut(s) | 338, 339, 463 |
| Bsu36I | CCTNAGG | 1 cut(s) | 687 |
| BsuI | GTATCC | 1 cut(s) | 196 |
| BsuRI | GGCC | 1 cut(s) | 383 |
| BtgI | CCRYGG | 1 cut(s) | 619 |
| BtsCI | GGATG | 2 cut(s) | 551, 697 |
| BtsIMutI | CAGTG | 2 cut(s) | 31, 252 |
| CaiI | CAGNNNCTG | 1 cut(s) | 504 |
| CciI | TCATGA | 1 cut(s) | 610 |
| CfoI | GCGC | 2 cut(s) | 369, 551 |
| Cfr10I | RCCGGY | 1 cut(s) | 113 |
| CseI | GACGC | 2 cut(s) | 17, 325 |
| CviAII | CATG | 4 cut(s) | 379, 559, 611, 620 |
| CviJI | RGCY | 9 cut(s) | 70, 168, 330, 351, 383, 467, 476, 501, 593 |
| CviKI_1 | RGCY | 9 cut(s) | 70, 168, 330, 351, 383, 467, 476, 501, 593 |
| DdeI | CTNAG | 3 cut(s) | 296, 453, 687 |
| DpnI | GATC | 6 cut(s) | 374, 446, 494, 580, 609, 676 |
| DpnII | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 26 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 26 |
| EaeI | YGGCCR | 1 cut(s) | 381 |
| Eam1104I | CTCTTC | 1 cut(s) | 113 |
| EarI | CTCTTC | 1 cut(s) | 113 |
| EciI | GGCGGA | 1 cut(s) | 26 |
| Eco130I | CCWWGG | 1 cut(s) | 619 |
| Eco81I | CCTNAGG | 1 cut(s) | 687 |
| EcoRI | GAATTC | 1 cut(s) | 614 |
| EcoRII | CCWGG | 1 cut(s) | 39 |
| EcoT14I | CCWWGG | 1 cut(s) | 619 |
| ErhI | CCWWGG | 1 cut(s) | 619 |
| Esp3I | CGTCTC | 1 cut(s) | 110 |
| FaeI | CATG | 4 cut(s) | 382, 562, 614, 623 |
| FaiI | YATR | 9 cut(s) | 380, 439, 510, 560, 572, 612, 621, 657, 659 |
| FaqI | GGGAC | 2 cut(s) | 225, 648 |
| FatI | CATG | 4 cut(s) | 378, 558, 610, 619 |
| FauNDI | CATATG | 1 cut(s) | 657 |
| FbaI | TGATCA | 1 cut(s) | 607 |
| Fnu4HI | GCNGC | 3 cut(s) | 328, 352, 477 |
| FokI | GGATG | 2 cut(s) | 558, 704 |
| Fsp4HI | GCNGC | 3 cut(s) | 328, 352, 477 |
| FspBI | CTAG | 1 cut(s) | 279 |
| GlaI | GCGC | 2 cut(s) | 368, 550 |
| GluI | GCNGC | 3 cut(s) | 328, 352, 477 |
| GsuI | CTGGAG | 1 cut(s) | 247 |
| HaeIII | GGCC | 1 cut(s) | 383 |
| HapII | CCGG | 2 cut(s) | 114, 702 |
| HgaI | GACGC | 2 cut(s) | 17, 325 |
| HhaI | GCGC | 2 cut(s) | 369, 551 |
| Hin1I | GRCGYC | 1 cut(s) | 336 |
| Hin1II | CATG | 4 cut(s) | 382, 562, 614, 623 |
| Hin6I | GCGC | 2 cut(s) | 367, 549 |
| HinP1I | GCGC | 2 cut(s) | 367, 549 |
| HinfI | GANTC | 3 cut(s) | 309, 722, 744 |
| HpaII | CCGG | 2 cut(s) | 114, 702 |
| HphI | GGTGA | 3 cut(s) | 17, 103, 331 |
| Hpy166II | GTNNAC | 2 cut(s) | 78, 91 |
| Hpy188I | TCNGA | 1 cut(s) | 749 |
| Hpy188III | TCNNGA | 7 cut(s) | 242, 264, 322, 408, 433, 448, 611 |
| Hpy8I | GTNNAC | 2 cut(s) | 78, 91 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 89 |
| HpyAV | CCTTC | 1 cut(s) | 569 |
| HpyCH4III | ACNGT | 4 cut(s) | 26, 64, 256, 506 |
| HpyCH4IV | ACGT | 4 cut(s) | 74, 84, 183, 522 |
| HpyCH4V | TGCA | 5 cut(s) | 78, 527, 558, 630, 646 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 333, 473, 555 |
| HpyF3I | CTNAG | 3 cut(s) | 296, 453, 687 |
| HpySE526I | ACGT | 4 cut(s) | 74, 84, 183, 522 |
| Hsp92I | GRCGYC | 1 cut(s) | 336 |
| Hsp92II | CATG | 4 cut(s) | 382, 562, 614, 623 |
| HspAI | GCGC | 2 cut(s) | 367, 549 |
| Ksp22I | TGATCA | 1 cut(s) | 607 |
| Kzo9I | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| LpnPI | CCDG | 8 cut(s) | 26, 53, 127, 178, 191, 277, 715, 727 |
| Lsp1109I | GCAGC | 3 cut(s) | 338, 339, 463 |
| LweI | GCATC | 2 cut(s) | 536, 639 |
| MaeI | CTAG | 1 cut(s) | 279 |
| MaeII | ACGT | 4 cut(s) | 74, 84, 183, 522 |
| MaeIII | GTNAC | 2 cut(s) | 5, 337 |
| MalI | GATC | 6 cut(s) | 374, 446, 494, 580, 609, 676 |
| MboI | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| MboII | GAAGA | 3 cut(s) | 100, 454, 575 |
| MhlI | GDGCHC | 1 cut(s) | 80 |
| MlsI | TGGCCA | 1 cut(s) | 383 |
| MluCI | AATT | 7 cut(s) | 13, 286, 511, 596, 614, 681, 726 |
| MluNI | TGGCCA | 1 cut(s) | 383 |
| MnlI | CCTC | 5 cut(s) | 205, 227, 404, 410, 529 |
| Mox20I | TGGCCA | 1 cut(s) | 383 |
| MscI | TGGCCA | 1 cut(s) | 383 |
| MseI | TTAA | 2 cut(s) | 47, 696 |
| Msp20I | TGGCCA | 1 cut(s) | 383 |
| MspI | CCGG | 2 cut(s) | 114, 702 |
| MspR9I | CCNGG | 2 cut(s) | 41, 703 |
| MvaI | CCWGG | 1 cut(s) | 41 |
| MvnI | CGCG | 1 cut(s) | 369 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 333, 473, 555 |
| NciI | CCSGG | 1 cut(s) | 703 |
| NcoI | CCATGG | 1 cut(s) | 619 |
| NdeI | CATATG | 1 cut(s) | 657 |
| NdeII | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| NlaIII | CATG | 4 cut(s) | 382, 562, 614, 623 |
| NmuCI | GTSAC | 2 cut(s) | 5, 337 |
| PagI | TCATGA | 1 cut(s) | 610 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 339 |
| PfeI | GAWTC | 3 cut(s) | 309, 722, 744 |
| PkrI | GCNGC | 3 cut(s) | 329, 353, 478 |
| PsiI | TTATAA | 1 cut(s) | 510 |
| Psp1406I | AACGTT | 1 cut(s) | 522 |
| Psp6I | CCWGG | 1 cut(s) | 39 |
| PspGI | CCWGG | 1 cut(s) | 39 |
| PstNI | CAGNNNCTG | 1 cut(s) | 504 |
| SaqAI | TTAA | 2 cut(s) | 47, 696 |
| SatI | GCNGC | 3 cut(s) | 328, 352, 477 |
| Sau3AI | GATC | 6 cut(s) | 372, 444, 492, 578, 607, 674 |
| ScrFI | CCNGG | 2 cut(s) | 41, 703 |
| SduI | GDGCHC | 1 cut(s) | 80 |
| SfaNI | GCATC | 2 cut(s) | 536, 639 |
| SfcI | CTRYAG | 1 cut(s) | 22 |
| SgrAI | CRCCGGYG | 1 cut(s) | 113 |
| SmlI | CTYRAG | 1 cut(s) | 322 |
| SmoI | CTYRAG | 1 cut(s) | 322 |
| SpeI | ACTAGT | 1 cut(s) | 278 |
| Sse9I | AATT | 7 cut(s) | 13, 286, 511, 596, 614, 681, 726 |
| SsiI | CCGC | 3 cut(s) | 37, 56, 479 |
| SspMI | CTAG | 1 cut(s) | 279 |
| StyD4I | CCNGG | 2 cut(s) | 39, 701 |
| StyI | CCWWGG | 1 cut(s) | 619 |
| TaaI | ACNGT | 4 cut(s) | 26, 64, 256, 506 |
| TaiI | ACGT | 4 cut(s) | 77, 87, 186, 525 |
| TaqI | TCGA | 7 cut(s) | 66, 153, 225, 375, 407, 495, 673 |
| TasI | AATT | 7 cut(s) | 13, 286, 511, 596, 614, 681, 726 |
| TfiI | GAWTC | 3 cut(s) | 309, 722, 744 |
| Tru1I | TTAA | 2 cut(s) | 47, 696 |
| Tru9I | TTAA | 2 cut(s) | 47, 696 |
| TscAI | CASTG | 2 cut(s) | 31, 259 |
| TseFI | GTSAC | 2 cut(s) | 5, 337 |
| TseI | GCWGC | 3 cut(s) | 327, 351, 476 |
| Tsp45I | GTSAC | 2 cut(s) | 5, 337 |
| TspDTI | ATGAA | 1 cut(s) | 627 |
| TspGWI | ACGGA | 2 cut(s) | 92, 548 |
| TspRI | CASTG | 2 cut(s) | 31, 259 |
| VneI | GTGCAC | 1 cut(s) | 76 |
| XapI | RAATTY | 1 cut(s) | 614 |
| XspI | CTAG | 1 cut(s) | 279 |