FvH4_5g09910

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000056
Physical Location & Seq
Forward (+)
5663165 .. 5666414
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09910.t1

Sequence Viewer

Length: 1116 bp
ATGGAAATCGACTCACATTGTTCTTTCTACAGCGTGGAACAATTAGGAACAATTGCACCCAAAGTCCTTGAAATCGCGAACGAAGTGGACACAATAATCAGATTCAGAAGCTTTGACAAGATTGGTATCAGCTGGAAAGAGGCTCCAATACCCATTATTTATGATACGCCAAAACTTCTTACTGAGAGAAGGTTTTTTGTCCTTCTCTCTGATGTCAAACGATTATCCAAAAGGCATGTGTATACAAAGATGATGGCTGAGAATCTTTCAAGCTTGTATGTAGGAGAACTTTCGCAGGCACCTGTTCTTGAAAGAATATTTAAGGTGGTTGATAAAGCCGTTCCCGGGGTGCCTATTAATATTAATATATATTATGTGAGTATTCGCTTCTTGGACAGTGGAAGTAGTGCTGGCATTGGGGATATAACACCTCACTTATCGGGAGGGTCAAGGCGTTCAAACGATGAAGTTATTATTGATAGGGCTACAATATTTAAGCCGATTCCTGCAACTAAATCATCCATTGAGGCTTTGGAGAAACTGATGCCTGATAGTTTGGATGCTAATGTAAGAGAGACACCATGTGCCATTTGTAGAGAGGCTCTTGATCACTTCATTGCTGTAGAAGCGGAGACTGATCATCAGCCGGTAATTAGACGCTTGCCCTGCTCGCATATGTATCATGGAGATTGCATAGACCTGTGGCTTGATATAAATAACTTTTGTCCCGTGTGCCGATATTCGTTGGCAGCCGTGGAAGCTGTTAGAGAGGCATCAATGCCTGGTTTTGCAAGCGAAGCCATTGATAAGATACTTCCCTCAGGAAGAAGGCGGCTGGATTGGCCTAGGATCATGATTTCTGCCGTTGGATTTCCACTGCTAATGAAGGCGCTCAGAATGCTCAAGCGGACCATTGGAGAAACAGAGCTGAAGTCTCTCTACAATCAAAGGCTCAATCTATCAAGAAACCACTGTGCGAAGAACAAATTTTACAGTTTCTGTAATGACATCAAAGGGGAAGAGGCCGATACAAAGTTGGGAAAAGCGAAGGGATCAAAAAGTCTGGTGAAGTCAAAATGGTGGATATCAGATAGAATAGAACCCAGATTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

372

Amino Acids

42.0

Weight (kDa)

8.62

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 195 - 246 3.9e-09 Ring finger domain
zf-rbx1 PF12678 195 - 246 1.1e-09 RING-H2 zinc finger domain
zf-C3HC4 PF00097 195 - 245 9.3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 298, 349
AccI GTMKAC 1 cut(s) 242
AccII CGCG 1 cut(s) 77
AciI CCGC 3 cut(s) 629, 832, 907
AclWI GGATC 2 cut(s) 857, 1060
AcsI RAATTY 1 cut(s) 986
AcuI CTGAAG 1 cut(s) 950
AdeI CACNNNGTG 1 cut(s) 584
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 4 cut(s) 71, 270, 311, 459
AjnI CCWGG 1 cut(s) 781
AluBI AGCT 5 cut(s) 111, 132, 273, 761, 928
AluI AGCT 5 cut(s) 111, 132, 273, 761, 928
Alw26I GTCTC 3 cut(s) 569, 626, 939
AlwI GGATC 2 cut(s) 857, 1060
AlwNI CAGNNNCTG 1 cut(s) 999
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 2 cut(s) 842, 1023
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 1 cut(s) 986
AseI ATTAAT 2 cut(s) 357, 363
AspA2I CCTAGG 1 cut(s) 845
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 1 cut(s) 909
AsuC2I CCSGG 2 cut(s) 345, 346
AsuHPI GGTGA 1 cut(s) 1078
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 909
AvrII CCTAGG 1 cut(s) 845
AxyI CCTNAGG 1 cut(s) 820
BanI GGYRCC 2 cut(s) 298, 349
BarI GAAGNNNNNNTAC 2 cut(s) 923, 955
BbvI GCAGC 1 cut(s) 761
BccI CCATC 1 cut(s) 247
BceAI ACGGC 3 cut(s) 323, 737, 848
BciT130I CCWGG 1 cut(s) 783
BclI TGATCA 2 cut(s) 607, 637
BcnI CCSGG 2 cut(s) 345, 346
BcoDI GTCTC 3 cut(s) 569, 626, 939
BfaI CTAG 1 cut(s) 846
BfmI CTRYAG 2 cut(s) 28, 621
BfoI RGCGCY 1 cut(s) 893
BisI GCNGC 2 cut(s) 750, 833
BlnI CCTAGG 1 cut(s) 845
BlsI GCNGC 2 cut(s) 751, 834
Bme1390I CCNGG 3 cut(s) 345, 346, 783
Bme18I GGWCC 1 cut(s) 909
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 909
BmiI GGNNCC 3 cut(s) 144, 300, 351
BmrFI CCNGG 3 cut(s) 345, 346, 783
BmsI GCATC 3 cut(s) 534, 550, 782
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 2 cut(s) 345, 346
BsaBI GATNNNNATC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 344, 345, 753, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 646
Bse21I CCTNAGG 1 cut(s) 820
Bse3DI GCAATG 1 cut(s) 615
Bse8I GATNNNNATC 1 cut(s) 125
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 4 cut(s) 344, 345, 753, 845
BseGI GGATG 2 cut(s) 518, 565
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 4 cut(s) 174, 249, 834, 907
BseXI GCAGC 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 844, 1025
BshNI GGYRCC 2 cut(s) 298, 349
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 2 cut(s) 345, 647
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 3 cut(s) 569, 626, 939
BsmFI GGGAC 1 cut(s) 711
BsmI GAATGC 1 cut(s) 903
BsnI GGCC 2 cut(s) 844, 1025
BsoBI CYCGRG 1 cut(s) 344
Bsp143I GATC 4 cut(s) 607, 637, 849, 1052
Bsp68I TCGCGA 1 cut(s) 77
BspACI CCGC 3 cut(s) 629, 832, 907
BspANI GGCC 2 cut(s) 844, 1025
BspCNI CTCAG 4 cut(s) 175, 250, 833, 906
BspFNI CGCG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 852
BspLI GGNNCC 3 cut(s) 144, 300, 351
BspPI GGATC 2 cut(s) 857, 1060
BspT107I GGYRCC 2 cut(s) 298, 349
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 646
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 4 cut(s) 344, 345, 753, 845
BssMI GATC 4 cut(s) 607, 637, 849, 1052
BssNAI GTATAC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 845
Bst1107I GTATAC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 3 cut(s) 398, 974, 995
Bst6I CTCTTC 1 cut(s) 1014
BstC8I GCNNGC 5 cut(s) 297, 412, 662, 671, 793
BstDEI CTNAG 4 cut(s) 183, 258, 820, 893
BstDSI CCRYGG 1 cut(s) 753
BstF5I GGATG 2 cut(s) 518, 565
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 893
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 4 cut(s) 610, 640, 852, 1055
BstMAI GTCTC 3 cut(s) 569, 626, 939
BstMBI GATC 4 cut(s) 607, 637, 849, 1052
BstMWI GCNNNNNNNGC 7 cut(s) 626, 666, 670, 758, 797, 841, 898
BstNI CCWGG 1 cut(s) 783
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 343, 344, 781
BstSFI CTRYAG 2 cut(s) 28, 621
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 761
BstZ17I GTATAC 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 820
BsuRI GGCC 2 cut(s) 844, 1025
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 2 cut(s) 518, 565
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 3 cut(s) 403, 875, 970
BtuMI TCGCGA 1 cut(s) 77
Cac8I GCNNGC 5 cut(s) 297, 412, 662, 671, 793
CaiI CAGNNNCTG 1 cut(s) 999
CciI TCATGA 1 cut(s) 852
CfoI GCGC 1 cut(s) 892
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 909
Cfr9I CCCGGG 1 cut(s) 344
CseI GACGC 1 cut(s) 666
CviAII CATG 4 cut(s) 236, 582, 683, 853
DdeI CTNAG 4 cut(s) 183, 258, 820, 893
DpnI GATC 4 cut(s) 609, 639, 851, 1054
DpnII GATC 4 cut(s) 607, 637, 849, 1052
DraIII CACNNNGTG 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 1014
EarI CTCTTC 1 cut(s) 1014
Eco130I CCWWGG 1 cut(s) 845
Eco32I GATATC 1 cut(s) 1086
Eco47I GGWCC 1 cut(s) 909
Eco57I CTGAAG 1 cut(s) 950
Eco81I CCTNAGG 1 cut(s) 820
Eco88I CYCGRG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 781
EcoRV GATATC 1 cut(s) 1086
EcoT14I CCWWGG 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 845
FaeI CATG 4 cut(s) 239, 585, 686, 856
FaqI GGGAC 1 cut(s) 711
FatI CATG 4 cut(s) 235, 581, 682, 852
FauNDI CATATG 1 cut(s) 675
FbaI TGATCA 2 cut(s) 607, 637
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 750, 833
FokI GGATG 2 cut(s) 505, 572
Fsp4HI GCNGC 2 cut(s) 750, 833
FspBI CTAG 1 cut(s) 846
GlaI GCGC 1 cut(s) 891
GluI GCNGC 2 cut(s) 750, 833
HaeII RGCGCY 1 cut(s) 893
HaeIII GGCC 2 cut(s) 844, 1025
HapII CCGG 2 cut(s) 345, 647
HgaI GACGC 1 cut(s) 666
HhaI GCGC 1 cut(s) 892
Hin1II CATG 4 cut(s) 239, 585, 686, 856
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HindIII AAGCTT 2 cut(s) 109, 271
HinfI GANTC 4 cut(s) 11, 102, 262, 502
HpaII CCGG 2 cut(s) 345, 647
HphI GGTGA 1 cut(s) 1078
Hpy166II GTNNAC 2 cut(s) 88, 243
Hpy188I TCNGA 5 cut(s) 101, 107, 211, 896, 1090
Hpy188III TCNNGA 7 cut(s) 76, 308, 441, 605, 822, 853, 963
Hpy8I GTNNAC 2 cut(s) 88, 243
HpyAV CCTTC 5 cut(s) 183, 212, 822, 880, 1042
HpyCH4III ACNGT 3 cut(s) 398, 974, 995
HpyCH4V TGCA 4 cut(s) 56, 509, 693, 791
HpyF10VI GCNNNNNNNGC 7 cut(s) 626, 666, 670, 758, 797, 841, 898
HpyF3I CTNAG 4 cut(s) 183, 258, 820, 893
Hsp92II CATG 4 cut(s) 239, 585, 686, 856
HspAI GCGC 1 cut(s) 890
Ksp22I TGATCA 2 cut(s) 607, 637
Kzo9I GATC 4 cut(s) 607, 637, 849, 1052
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 1 cut(s) 761
LweI GCATC 3 cut(s) 534, 550, 782
MaeI CTAG 1 cut(s) 846
MalI GATC 4 cut(s) 609, 639, 851, 1054
MboI GATC 4 cut(s) 607, 637, 849, 1052
MboII GAAGA 3 cut(s) 837, 991, 1031
MfeI CAATTG 1 cut(s) 51
MluCI AATT 4 cut(s) 41, 51, 651, 986
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 847
MnlI CCTC 8 cut(s) 133, 437, 441, 520, 592, 763, 829, 1015
MseI TTAA 4 cut(s) 321, 357, 363, 495
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 2 cut(s) 345, 647
MspR9I CCNGG 3 cut(s) 345, 346, 783
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 903
MvaI CCWGG 1 cut(s) 783
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 7 cut(s) 626, 666, 670, 758, 797, 841, 898
NciI CCSGG 2 cut(s) 345, 346
NdeI CATATG 1 cut(s) 675
NdeII GATC 4 cut(s) 607, 637, 849, 1052
NlaIII CATG 4 cut(s) 239, 585, 686, 856
NlaIV GGNNCC 3 cut(s) 144, 300, 351
NruI TCGCGA 1 cut(s) 77
NspI RCATGY 1 cut(s) 239
PagI TCATGA 1 cut(s) 852
PctI GAATGC 1 cut(s) 903
PfeI GAWTC 3 cut(s) 102, 262, 502
PkrI GCNGC 2 cut(s) 751, 834
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PshBI ATTAAT 2 cut(s) 357, 363
Psp6I CCWGG 1 cut(s) 781
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 3 cut(s) 144, 300, 351
PspPI GGNCC 1 cut(s) 909
PsrI GAACNNNNNNTAC 2 cut(s) 974, 1006
PstNI CAGNNNCTG 1 cut(s) 999
PvuII CAGCTG 1 cut(s) 132
RruI TCGCGA 1 cut(s) 77
SaqAI TTAA 4 cut(s) 321, 357, 363, 495
SatI GCNGC 2 cut(s) 750, 833
Sau3AI GATC 4 cut(s) 607, 637, 849, 1052
Sau96I GGNCC 1 cut(s) 909
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 3 cut(s) 345, 346, 783
SfaNI GCATC 3 cut(s) 534, 550, 782
SfcI CTRYAG 2 cut(s) 28, 621
SinI GGWCC 1 cut(s) 909
SmaI CCCGGG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 4 cut(s) 41, 51, 651, 986
SsiI CCGC 3 cut(s) 629, 832, 907
SspI AATATT 3 cut(s) 318, 361, 492
SspMI CTAG 1 cut(s) 846
StyD4I CCNGG 3 cut(s) 343, 344, 781
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 3 cut(s) 398, 974, 995
TaqI TCGA 1 cut(s) 9
TasI AATT 4 cut(s) 41, 51, 651, 986
TauI GCSGC 1 cut(s) 835
TfiI GAWTC 3 cut(s) 102, 262, 502
Tru1I TTAA 4 cut(s) 321, 357, 363, 495
Tru9I TTAA 4 cut(s) 321, 357, 363, 495
TscAI CASTG 3 cut(s) 403, 882, 977
TseI GCWGC 1 cut(s) 749
TspDTI ATGAA 3 cut(s) 480, 604, 899
TspMI CCCGGG 1 cut(s) 344
TspRI CASTG 3 cut(s) 403, 882, 977
VpaK11BI GGWCC 1 cut(s) 909
VspI ATTAAT 2 cut(s) 357, 363
XapI RAATTY 1 cut(s) 986
XceI RCATGY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 845
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.