ubiquitin-protein transferase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RING_2 | PF13639 | 213 - 258 | 1.3e-11 | Ring finger domain |
| zf-RING_11 | PF17123 | 214 - 244 | 1.4e-07 | RING-like zinc finger |
| zf-C3HC4_2 | PF13923 | 214 - 257 | 5.2e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-C3HC4 | PF00097 | 214 - 257 | 4.6e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-rbx1 | PF12678 | 218 - 258 | 8.1e-07 | RING-H2 zinc finger domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 706 |
| AccI | GTMKAC | 1 cut(s) | 409 |
| AciI | CCGC | 6 cut(s) | 133, 187, 205, 272, 325, 359 |
| AclWI | GGATC | 2 cut(s) | 140, 178 |
| AcuI | CTGAAG | 1 cut(s) | 764 |
| AdeI | CACNNNGTG | 1 cut(s) | 251 |
| AfaI | GTAC | 1 cut(s) | 303 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 86, 368 |
| AgsI | TTSAA | 5 cut(s) | 176, 440, 533, 810, 819 |
| AjiI | CACGTC | 1 cut(s) | 349 |
| AjnI | CCWGG | 2 cut(s) | 258, 416 |
| AluBI | AGCT | 3 cut(s) | 308, 582, 606 |
| AluI | AGCT | 3 cut(s) | 308, 582, 606 |
| Alw26I | GTCTC | 1 cut(s) | 86 |
| AlwI | GGATC | 2 cut(s) | 140, 178 |
| ApeKI | GCWGC | 3 cut(s) | 207, 265, 308 |
| AspLEI | GCGC | 2 cut(s) | 324, 707 |
| BaeGI | GKGCMC | 1 cut(s) | 764 |
| BbsI | GAAGAC | 2 cut(s) | 752, 798 |
| BbvI | GCAGC | 3 cut(s) | 219, 277, 295 |
| BccI | CCATC | 1 cut(s) | 643 |
| BceAI | ACGGC | 1 cut(s) | 346 |
| BciT130I | CCWGG | 2 cut(s) | 260, 418 |
| BclI | TGATCA | 1 cut(s) | 679 |
| BcoDI | GTCTC | 1 cut(s) | 86 |
| BfaI | CTAG | 2 cut(s) | 248, 722 |
| BfoI | RGCGCY | 1 cut(s) | 325 |
| BisI | GCNGC | 6 cut(s) | 133, 208, 266, 309, 325, 359 |
| BlsI | GCNGC | 6 cut(s) | 134, 209, 267, 310, 326, 360 |
| Bme1390I | CCNGG | 2 cut(s) | 260, 418 |
| BmgBI | CACGTC | 1 cut(s) | 349 |
| BmrFI | CCNGG | 2 cut(s) | 260, 418 |
| BmsI | GCATC | 1 cut(s) | 394 |
| BpiI | GAAGAC | 2 cut(s) | 752, 798 |
| BpmI | CTGGAG | 1 cut(s) | 281 |
| BsaBI | GATNNNNATC | 2 cut(s) | 114, 384 |
| BsaI | GGTCTC | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 3 cut(s) | 258, 417, 737 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 86, 368 |
| Bse1I | ACTGG | 1 cut(s) | 462 |
| Bse3DI | GCAATG | 2 cut(s) | 339, 429 |
| Bse8I | GATNNNNATC | 2 cut(s) | 114, 384 |
| BseBI | CCWGG | 2 cut(s) | 260, 418 |
| BseDI | CCNNGG | 3 cut(s) | 258, 417, 737 |
| BseGI | GGATG | 1 cut(s) | 569 |
| BseJI | GATNNNNATC | 2 cut(s) | 114, 384 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 86, 368 |
| BseMI | GCAATG | 2 cut(s) | 339, 429 |
| BseNI | ACTGG | 1 cut(s) | 462 |
| BseRI | GAGGAG | 1 cut(s) | 184 |
| BseSI | GKGCMC | 1 cut(s) | 764 |
| BseXI | GCAGC | 3 cut(s) | 219, 277, 295 |
| Bsh1285I | CGRYCG | 1 cut(s) | 18 |
| BsiEI | CGRYCG | 1 cut(s) | 18 |
| BslFI | GGGAC | 2 cut(s) | 239, 719 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 86, 368 |
| BsmAI | GTCTC | 1 cut(s) | 86 |
| BsmFI | GGGAC | 2 cut(s) | 239, 719 |
| Bso31I | GGTCTC | 1 cut(s) | 86 |
| Bsp1286I | GDGCHC | 1 cut(s) | 764 |
| Bsp143I | GATC | 3 cut(s) | 145, 183, 679 |
| BspACI | CCGC | 6 cut(s) | 133, 187, 205, 272, 325, 359 |
| BspHI | TCATGA | 1 cut(s) | 388 |
| BspPI | GGATC | 2 cut(s) | 140, 178 |
| BspTNI | GGTCTC | 1 cut(s) | 86 |
| BsrDI | GCAATG | 2 cut(s) | 339, 429 |
| BsrI | ACTGG | 1 cut(s) | 462 |
| BssECI | CCNNGG | 3 cut(s) | 258, 417, 737 |
| BssMI | GATC | 3 cut(s) | 145, 183, 679 |
| Bst2UI | CCWGG | 2 cut(s) | 260, 418 |
| Bst4CI | ACNGT | 3 cut(s) | 172, 355, 790 |
| Bst6I | CTCTTC | 1 cut(s) | 789 |
| BstC8I | GCNNGC | 1 cut(s) | 584 |
| BstDEI | CTNAG | 1 cut(s) | 56 |
| BstDSI | CCRYGG | 1 cut(s) | 737 |
| BstF5I | GGATG | 1 cut(s) | 569 |
| BstH2I | RGCGCY | 1 cut(s) | 325 |
| BstHHI | GCGC | 2 cut(s) | 324, 707 |
| BstKTI | GATC | 3 cut(s) | 148, 186, 682 |
| BstMAI | GTCTC | 1 cut(s) | 86 |
| BstMBI | GATC | 3 cut(s) | 145, 183, 679 |
| BstMCI | CGRYCG | 1 cut(s) | 18 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 271 |
| BstNI | CCWGG | 2 cut(s) | 260, 418 |
| BstSCI | CCNGG | 2 cut(s) | 258, 416 |
| BstSLI | GKGCMC | 1 cut(s) | 764 |
| BstV1I | GCAGC | 3 cut(s) | 219, 277, 295 |
| BstV2I | GAAGAC | 2 cut(s) | 752, 798 |
| BtgI | CCRYGG | 1 cut(s) | 737 |
| BtrI | CACGTC | 1 cut(s) | 349 |
| BtsCI | GGATG | 1 cut(s) | 569 |
| BtsIMutI | CAGTG | 3 cut(s) | 168, 396, 469 |
| Cac8I | GCNNGC | 1 cut(s) | 584 |
| CciI | TCATGA | 1 cut(s) | 388 |
| CfoI | GCGC | 2 cut(s) | 324, 707 |
| Csp6I | GTAC | 1 cut(s) | 302 |
| CviAII | CATG | 5 cut(s) | 97, 389, 497, 519, 639 |
| CviJI | RGCY | 7 cut(s) | 132, 210, 215, 308, 582, 606, 742 |
| CviKI_1 | RGCY | 7 cut(s) | 132, 210, 215, 308, 582, 606, 742 |
| CviQI | GTAC | 1 cut(s) | 302 |
| DdeI | CTNAG | 1 cut(s) | 56 |
| DpnI | GATC | 3 cut(s) | 147, 185, 681 |
| DpnII | GATC | 3 cut(s) | 145, 183, 679 |
| DraIII | CACNNNGTG | 1 cut(s) | 251 |
| Eam1104I | CTCTTC | 1 cut(s) | 789 |
| EarI | CTCTTC | 1 cut(s) | 789 |
| Eco31I | GGTCTC | 1 cut(s) | 86 |
| Eco57I | CTGAAG | 1 cut(s) | 764 |
| EcoRII | CCWGG | 2 cut(s) | 258, 416 |
| EcoT22I | ATGCAT | 1 cut(s) | 478 |
| FaeI | CATG | 5 cut(s) | 100, 392, 500, 522, 642 |
| FaiI | YATR | 9 cut(s) | 98, 390, 472, 474, 498, 520, 540, 578, 640 |
| FaqI | GGGAC | 2 cut(s) | 239, 719 |
| FatI | CATG | 5 cut(s) | 96, 388, 496, 518, 638 |
| FbaI | TGATCA | 1 cut(s) | 679 |
| FblI | GTMKAC | 1 cut(s) | 409 |
| Fnu4HI | GCNGC | 6 cut(s) | 133, 208, 266, 309, 325, 359 |
| FokI | GGATG | 1 cut(s) | 556 |
| Fsp4HI | GCNGC | 6 cut(s) | 133, 208, 266, 309, 325, 359 |
| FspBI | CTAG | 2 cut(s) | 248, 722 |
| FspI | TGCGCA | 1 cut(s) | 706 |
| GlaI | GCGC | 2 cut(s) | 323, 706 |
| GluI | GCNGC | 6 cut(s) | 133, 208, 266, 309, 325, 359 |
| GsuI | CTGGAG | 1 cut(s) | 281 |
| HaeII | RGCGCY | 1 cut(s) | 325 |
| HhaI | GCGC | 2 cut(s) | 324, 707 |
| Hin1II | CATG | 5 cut(s) | 100, 392, 500, 522, 642 |
| Hin6I | GCGC | 2 cut(s) | 322, 705 |
| HinP1I | GCGC | 2 cut(s) | 322, 705 |
| HincII | GTYRAC | 1 cut(s) | 490 |
| HindII | GTYRAC | 1 cut(s) | 490 |
| HinfI | GANTC | 3 cut(s) | 524, 751, 803 |
| Hpy166II | GTNNAC | 2 cut(s) | 410, 490 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 4 cut(s) | 317, 389, 452, 722 |
| Hpy8I | GTNNAC | 2 cut(s) | 410, 490 |
| HpyAV | CCTTC | 2 cut(s) | 662, 825 |
| HpyCH4III | ACNGT | 3 cut(s) | 172, 355, 790 |
| HpyCH4IV | ACGT | 1 cut(s) | 348 |
| HpyCH4V | TGCA | 6 cut(s) | 344, 476, 560, 586, 665, 729 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 271 |
| HpyF3I | CTNAG | 1 cut(s) | 56 |
| HpySE526I | ACGT | 1 cut(s) | 348 |
| Hsp92II | CATG | 5 cut(s) | 100, 392, 500, 522, 642 |
| HspAI | GCGC | 2 cut(s) | 322, 705 |
| Ksp22I | TGATCA | 1 cut(s) | 679 |
| Kzo9I | GATC | 3 cut(s) | 145, 183, 679 |
| LmnI | GCTCC | 1 cut(s) | 262 |
| Lsp1109I | GCAGC | 3 cut(s) | 219, 277, 295 |
| LweI | GCATC | 1 cut(s) | 394 |
| MaeI | CTAG | 2 cut(s) | 248, 722 |
| MaeII | ACGT | 1 cut(s) | 348 |
| MaeIII | GTNAC | 3 cut(s) | 349, 514, 752 |
| MalI | GATC | 3 cut(s) | 147, 185, 681 |
| MboI | GATC | 3 cut(s) | 145, 183, 679 |
| MboII | GAAGA | 5 cut(s) | 623, 626, 757, 798, 806 |
| MhlI | GDGCHC | 1 cut(s) | 764 |
| MluCI | AATT | 5 cut(s) | 9, 71, 177, 440, 467 |
| MlyI | GAGTC | 3 cut(s) | 533, 760, 812 |
| MnlI | CCTC | 7 cut(s) | 87, 159, 175, 205, 290, 478, 790 |
| Mph1103I | ATGCAT | 1 cut(s) | 478 |
| MseI | TTAA | 2 cut(s) | 654, 826 |
| MslI | CAYNNNNRTG | 2 cut(s) | 332, 390 |
| MspR9I | CCNGG | 2 cut(s) | 260, 418 |
| MvaI | CCWGG | 2 cut(s) | 260, 418 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 271 |
| NdeII | GATC | 3 cut(s) | 145, 183, 679 |
| NlaIII | CATG | 5 cut(s) | 100, 392, 500, 522, 642 |
| NmuCI | GTSAC | 3 cut(s) | 349, 514, 752 |
| NsbI | TGCGCA | 1 cut(s) | 706 |
| NsiI | ATGCAT | 1 cut(s) | 478 |
| PagI | TCATGA | 1 cut(s) | 388 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 11 |
| PkrI | GCNGC | 6 cut(s) | 134, 209, 267, 310, 326, 360 |
| PleI | GAGTC | 3 cut(s) | 532, 759, 811 |
| PpsI | GAGTC | 3 cut(s) | 532, 759, 811 |
| Psp6I | CCWGG | 2 cut(s) | 258, 416 |
| PspGI | CCWGG | 2 cut(s) | 258, 416 |
| RsaI | GTAC | 1 cut(s) | 303 |
| RsaNI | GTAC | 1 cut(s) | 302 |
| RseI | CAYNNNNRTG | 2 cut(s) | 332, 390 |
| SaqAI | TTAA | 2 cut(s) | 654, 826 |
| SatI | GCNGC | 6 cut(s) | 133, 208, 266, 309, 325, 359 |
| Sau3AI | GATC | 3 cut(s) | 145, 183, 679 |
| SchI | GAGTC | 3 cut(s) | 533, 760, 812 |
| ScrFI | CCNGG | 2 cut(s) | 260, 418 |
| SduI | GDGCHC | 1 cut(s) | 764 |
| SfaNI | GCATC | 1 cut(s) | 394 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 332, 390 |
| Sse9I | AATT | 5 cut(s) | 9, 71, 177, 440, 467 |
| SsiI | CCGC | 6 cut(s) | 133, 187, 205, 272, 325, 359 |
| SspMI | CTAG | 2 cut(s) | 248, 722 |
| StyD4I | CCNGG | 2 cut(s) | 258, 416 |
| TaaI | ACNGT | 3 cut(s) | 172, 355, 790 |
| TaiI | ACGT | 1 cut(s) | 351 |
| TaqI | TCGA | 4 cut(s) | 14, 282, 504, 772 |
| TaqII | GACCGA | 1 cut(s) | 32 |
| TasI | AATT | 5 cut(s) | 9, 71, 177, 440, 467 |
| TauI | GCSGC | 3 cut(s) | 135, 327, 361 |
| Tru1I | TTAA | 2 cut(s) | 654, 826 |
| Tru9I | TTAA | 2 cut(s) | 654, 826 |
| TscAI | CASTG | 3 cut(s) | 175, 403, 469 |
| TseFI | GTSAC | 3 cut(s) | 349, 514, 752 |
| TseI | GCWGC | 3 cut(s) | 207, 265, 308 |
| Tsp45I | GTSAC | 3 cut(s) | 349, 514, 752 |
| TspRI | CASTG | 3 cut(s) | 175, 403, 469 |
| XbaI | TCTAGA | 1 cut(s) | 721 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 218 |
| XmiI | GTMKAC | 1 cut(s) | 409 |
| XspI | CTAG | 2 cut(s) | 248, 722 |
| Zsp2I | ATGCAT | 1 cut(s) | 478 |