Rroxscaffold_5G00381320

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000056
Physical Location & Seq
Reverse (-)
61367514 .. 61372210
4697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381320.1

Sequence Viewer

Length: 825 bp
ATGGAGGAATTTTTCTATAATCACGCTGCGGTGCAAAAAAGGGTAAGCCGGCTCACAGGCTCTTGGGAGGAGGACAAGCTGTTCATCAGATTGAAGTTCTACGAATCAAGCATTGGGCACCGTGTGACAAGCGATCCAATTGTTGAATACTACAATGCTAAAATAGCCCAAAGAGATTTTTGGGTAAAGTTTTCTCATTTCAAGCACCAATTATCCGACAACTACGACAGTAACAGGGAGTATGAAACGCTCATCTGCGAGTATCTGAAGAGTATGGGTGTGCCGGAAGATGAACATCCTGCTGTTGTTGACAAGCTATTCCGGGTGGTTGAGGCTGCCGTCTCCCCTGTGGACGCTGTTGCTGTTGCTAAACTGCTACCGGCACTAAATGGTAAATTAACAGGACTAGCCTTCAGGGTTCCCAGTGTTGATTTTACCGTGGTTGACCTGACACTGAGACTTGAGAAGAAGGCTACTAAAGATGAGACTGAAAATGCTTTTCACTATGATTTCTTTTATGTTACTCTTATAAGCATGCTTTGGAAAATTAAAAAACTAATGAGACGCAAGACAAACGGCTTACCTAAAGACCACAGTCAAAAAGTTCAGCTCTTGCTGCCCAACCCCTTCCCCTTCCCCTTCCACGTCCCCGGCCTCGTACCCCACGTCCCCCTGCTTCTGCTGGAATCTCTGGCTCAGCTGGTACTACCGGGCCTCTTCCACGGCCTCTACCCCGTCCTCGAAGTGGCACCCAGTTATGCAAATCCAAGCCACGTGCAACAGGGATATCAGAATATCCCAGTGCTGCAGCAAACTGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

274

Amino Acids

31.38

Weight (kDa)

7.19

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_C PF02800 119 - 167 1.3e-11 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 530
AccB1I GGYRCC 2 cut(s) 117, 748
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 2 cut(s) 287, 397
AcvI CACGTG 1 cut(s) 775
AdeI CACNNNGTG 1 cut(s) 124
AfaI GTAC 2 cut(s) 660, 705
AfiI CCNNNNNNNGG 1 cut(s) 745
AgsI TTSAA 3 cut(s) 94, 146, 202
AjiI CACGTC 2 cut(s) 646, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 4 cut(s) 79, 316, 610, 700
AluI AGCT 4 cut(s) 79, 316, 610, 700
Alw26I GTCTC 4 cut(s) 346, 451, 479, 556
AlwI GGATC 1 cut(s) 128
AoxI GGCC 3 cut(s) 652, 712, 724
ApeKI GCWGC 5 cut(s) 26, 335, 616, 805, 808
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 712
AsuC2I CCSGG 3 cut(s) 323, 651, 711
BaeGI GKGCMC 1 cut(s) 120
BanI GGYRCC 2 cut(s) 117, 748
BbrPI CACGTG 1 cut(s) 775
BbvI GCAGC 5 cut(s) 13, 322, 603, 792, 820
BceAI ACGGC 3 cut(s) 323, 592, 739
BcnI CCSGG 3 cut(s) 323, 651, 711
BcoDI GTCTC 4 cut(s) 346, 451, 479, 556
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 806
BisI GCNGC 5 cut(s) 27, 336, 617, 806, 809
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 5 cut(s) 28, 337, 618, 807, 810
Bme1390I CCNGG 3 cut(s) 323, 651, 711
BmgBI CACGTC 2 cut(s) 646, 667
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 3 cut(s) 119, 420, 750
BmrFI CCNGG 3 cut(s) 323, 651, 711
BmrI ACTGGG 3 cut(s) 417, 747, 794
BmuI ACTGGG 3 cut(s) 417, 747, 794
BoxI GACNNNNGTC 1 cut(s) 594
Bpu1102I GCTNAGC 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 482
BpuMI CCSGG 3 cut(s) 323, 651, 711
BsaAI YACGTR 1 cut(s) 775
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 438, 649, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse118I RCCGGY 2 cut(s) 48, 379
Bse1I ACTGG 4 cut(s) 423, 753, 800, 820
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 438, 649, 721
BseGI GGATG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 2 cut(s) 446, 710
BseNI ACTGG 4 cut(s) 423, 753, 800, 820
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 5 cut(s) 13, 322, 603, 792, 820
BshFI GGCC 3 cut(s) 654, 714, 726
BshNI GGYRCC 2 cut(s) 117, 748
BsiSI CCGG 6 cut(s) 49, 284, 322, 380, 651, 710
BslFI GGGAC 2 cut(s) 632, 653
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 4 cut(s) 346, 451, 479, 556
BsmBI CGTCTC 2 cut(s) 346, 556
BsmFI GGGAC 2 cut(s) 632, 653
BsnI GGCC 3 cut(s) 654, 714, 726
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 696
BspACI CCGC 1 cut(s) 29
BspANI GGCC 3 cut(s) 654, 714, 726
BspCNI CTCAG 2 cut(s) 447, 709
BspLI GGNNCC 3 cut(s) 119, 420, 750
BspMAI CTGCAG 1 cut(s) 810
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 2 cut(s) 117, 748
BsrFI RCCGGY 2 cut(s) 48, 379
BsrI ACTGG 4 cut(s) 423, 753, 800, 820
BssAI RCCGGY 2 cut(s) 48, 379
BssECI CCNNGG 3 cut(s) 438, 649, 721
BssMI GATC 1 cut(s) 133
Bst4CI ACNGT 4 cut(s) 122, 230, 439, 596
Bst6I CTCTTC 2 cut(s) 263, 722
BstBAI YACGTR 1 cut(s) 775
BstC8I GCNNGC 2 cut(s) 50, 536
BstDEI CTNAG 2 cut(s) 455, 696
BstDSI CCRYGG 2 cut(s) 438, 721
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 4 cut(s) 346, 451, 479, 556
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 164, 616
BstNSI RCATGY 1 cut(s) 538
BstPAI GACNNNNGTC 1 cut(s) 594
BstSCI CCNGG 3 cut(s) 321, 649, 709
BstSFI CTRYAG 1 cut(s) 806
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 13, 322, 603, 792, 820
BsuRI GGCC 3 cut(s) 654, 714, 726
BtgI CCRYGG 2 cut(s) 438, 721
BtrI CACGTC 2 cut(s) 646, 667
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 3 cut(s) 430, 452, 807
Cac8I GCNNGC 2 cut(s) 50, 536
Cfr10I RCCGGY 2 cut(s) 48, 379
Cfr13I GGNCC 1 cut(s) 712
CseI GACGC 2 cut(s) 362, 573
Csp6I GTAC 2 cut(s) 659, 704
CviAII CATG 1 cut(s) 535
CviQI GTAC 2 cut(s) 659, 704
DdeI CTNAG 2 cut(s) 455, 696
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DraIII CACNNNGTG 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 263, 722
EarI CTCTTC 2 cut(s) 263, 722
Eco32I GATATC 1 cut(s) 788
Eco57I CTGAAG 2 cut(s) 287, 397
Eco72I CACGTG 1 cut(s) 775
EcoRV GATATC 1 cut(s) 788
Esp3I CGTCTC 2 cut(s) 346, 556
FaeI CATG 1 cut(s) 538
FaiI YATR 9 cut(s) 18, 243, 275, 507, 519, 530, 536, 759, 823
FaqI GGGAC 2 cut(s) 632, 653
FatI CATG 1 cut(s) 534
Fnu4HI GCNGC 5 cut(s) 27, 336, 617, 806, 809
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 5 cut(s) 27, 336, 617, 806, 809
FspBI CTAG 1 cut(s) 407
GluI GCNGC 5 cut(s) 27, 336, 617, 806, 809
HaeIII GGCC 3 cut(s) 654, 714, 726
HapII CCGG 6 cut(s) 49, 284, 322, 380, 651, 710
HgaI GACGC 2 cut(s) 362, 573
Hin1II CATG 1 cut(s) 538
HincII GTYRAC 2 cut(s) 310, 445
HindII GTYRAC 2 cut(s) 310, 445
HinfI GANTC 2 cut(s) 104, 686
HpaII CCGG 6 cut(s) 49, 284, 322, 380, 651, 710
Hpy166II GTNNAC 3 cut(s) 310, 352, 445
Hpy188I TCNGA 4 cut(s) 89, 217, 267, 792
Hpy8I GTNNAC 3 cut(s) 310, 352, 445
HpyAV CCTTC 5 cut(s) 421, 463, 637, 643, 649
HpyCH4III ACNGT 4 cut(s) 122, 230, 439, 596
HpyCH4IV ACGT 3 cut(s) 645, 666, 774
HpyCH4V TGCA 4 cut(s) 34, 761, 778, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 616
HpyF3I CTNAG 2 cut(s) 455, 696
HpySE526I ACGT 3 cut(s) 645, 666, 774
Hsp92II CATG 1 cut(s) 538
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 133
Lsp1109I GCAGC 5 cut(s) 13, 322, 603, 792, 820
MaeI CTAG 1 cut(s) 407
MaeII ACGT 3 cut(s) 645, 666, 774
MaeIII GTNAC 3 cut(s) 124, 230, 520
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 4 cut(s) 280, 299, 478, 709
MfeI CAATTG 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 5 cut(s) 8, 138, 209, 395, 546
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 7 cut(s) 61, 64, 325, 665, 725, 737, 749
MroNI GCCGGC 1 cut(s) 48
MseI TTAA 2 cut(s) 398, 549
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 6 cut(s) 49, 284, 322, 380, 651, 710
MspR9I CCNGG 3 cut(s) 323, 651, 711
MunI CAATTG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 164, 616
NaeI GCCGGC 1 cut(s) 50
NciI CCSGG 3 cut(s) 323, 651, 711
NdeII GATC 1 cut(s) 133
NgoMIV GCCGGC 1 cut(s) 48
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 3 cut(s) 119, 420, 750
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 538
PaeI GCATGC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PdiI GCCGGC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 104, 686
PkrI GCNGC 5 cut(s) 28, 337, 618, 807, 810
PmaCI CACGTG 1 cut(s) 775
PmlI CACGTG 1 cut(s) 775
Ppu21I YACGTR 1 cut(s) 775
PshAI GACNNNNGTC 1 cut(s) 594
PsiI TTATAA 1 cut(s) 530
PspCI CACGTG 1 cut(s) 775
PspN4I GGNNCC 3 cut(s) 119, 420, 750
PspPI GGNCC 1 cut(s) 712
PstI CTGCAG 1 cut(s) 810
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 2 cut(s) 660, 705
RsaNI GTAC 2 cut(s) 659, 704
SaqAI TTAA 2 cut(s) 398, 549
SatI GCNGC 5 cut(s) 27, 336, 617, 806, 809
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 712
ScrFI CCNGG 3 cut(s) 323, 651, 711
SduI GDGCHC 1 cut(s) 120
SetI ASST 9 cut(s) 81, 318, 450, 586, 612, 648, 669, 702, 777
SfcI CTRYAG 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SphI GCATGC 1 cut(s) 538
Sse9I AATT 5 cut(s) 8, 138, 209, 395, 546
SsiI CCGC 1 cut(s) 29
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 3 cut(s) 321, 649, 709
TaaI ACNGT 4 cut(s) 122, 230, 439, 596
TaiI ACGT 3 cut(s) 648, 669, 777
TaqI TCGA 1 cut(s) 741
TasI AATT 5 cut(s) 8, 138, 209, 395, 546
TfiI GAWTC 2 cut(s) 104, 686
Tru1I TTAA 2 cut(s) 398, 549
Tru9I TTAA 2 cut(s) 398, 549
TscAI CASTG 3 cut(s) 430, 459, 807
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 5 cut(s) 26, 335, 616, 805, 808
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 73, 258, 306
TspRI CASTG 3 cut(s) 430, 459, 807
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 538
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.