Rorug07G0015300

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000056
Physical Location & Seq
Reverse (-)
1198232 .. 1203140
4909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0015300.1

Sequence Viewer

Length: 2064 bp
ATGGCGAATTGGATCTCCTCCAAACTCAGAGCCGCCGAGACCATCCTCCAACAGATCGATCAGCAAGCGGCGGAGTCGTTACGGAAAAACGAGAAGCCTGTCGCCGACGACGACTTGAAGTTCGGCGCTCCGGCGAAAACCGGAGGCAGTGTGCCTCTGAAGGACCAGTTGAAGAAGAAAACCCTAGAAAATAGTGATTATAGCGGAAAATTAAGGAGCGATCCGAGCTTTAGCAATGTTAATAGCAGCAATTATAGTAGTAGTGGTAATGAAAATAGTAGTAGTAATAATAAGGATAAAGAGATTGTTGGAAAGGCGAAATCCGAGCCTCTTAGTGATAGTGACTGGACTCAACTTCTCAGTGCACCGAAGCTGGCAGCTGCTACTACTTCTACATCGAGCCGTGGCAATGGTTTGCCCGCGGTTCGGGGTTTGAGGAGGGATGGTAGGAGGCAGGGCAGTGCAGCTTCTGCTTCGAATTTGGAGGTTAAGAAGAATCAGAAGAGTGGGAGTGCTAATAATGTTATGAAGTCGGTGCAGAGAGCAGGTGTTGGGGAAGGTAGGAAGTTGAATGGGAGAGTGAGTGATGGGGAGGAGTCTGGTATTCCGGATTCAGCACGGAGGTTTTCCACTGGTGAATTGAAGAGTGATGGTAAGGTTATGGAAGGAGGTGAGTTGGATTATAGGGATGTGGGAGTGGACACTTCGGTTGAAATAAAAGGTAAGGCAAATGAAGAAAAGGGCGGAGCTTTTGATACAAAGGAGCTTTCATTGGAGGGTCGTCTAGAGTCAGTAAAGAAAAATGAAGGGTTGTCCTACAAGAAGATTGGAGGGCAGAGTATGAACGATCAGTTGAGAAGCACTACTGTCAGGGGTAAGCATGAGTCCAGTGAAGCTGCTAGGAGTTCTACCTCCGAAGACTTCAAGAGAGGTTTTACTTCAGTAACTGATGGCAGCTCTGAGTCTGACTCAGATTCTGGTTCAAGTTCTGATTCTGAAAGTGAGCGTGAGAAGGAGGAAAGGAGAAAGCAGAGACAGAAGATTCTAGCTGAGAAAGCAGCAGCTAAAGCTGTGGAGGCCATTAAAGAGAAGGAAAATACGGTTGCCAGATTGGAAGGGGAGAAGCAGAGCTTGGAGAAAATACTTGAAGTTCAAGTGAAGCAACAAGCACAAGAGGCTTCAAAGCTACAAACGACGATGATGGAAACCATGGAAGCGGCTGATATAGAGAAGCAGAAACATAATAGTACTAGAATGGAAGCCTTTGTGCGTTTGGCTAAACTTGAGACTGCAAATGCTGACCTTGCGAAATCCCTAGCCACTGTGCAGTGGAATCTCGAACAGGAGGTCAATCATGTAGCAGAACTTCGACAGCAAGTTGAGTTAAAAGAAGTTAGCCATGAAGAACTCAGGAGGAAGATCTCTGATACTCATCAGATCGAAATATCTTTAAAGAAAGTAGCGGCTCCAAAAGGACTTGAACTTGAGCGAGAGATTTTGGAGGCAGAGTATGCTATTATAACTGATAAAGTTACACGACTGCAAGATAAGGCAAAGAAGCTGGAAGCAGACATTGAAATGACAAGGAAAGATATAGAGGATCCAACTGATATAGAAATTGAGCTCCAGCGAAGACTTTCTCAGATGACTGACCATTTGATTCAGAAACAAGCCCAGGTTGAGGCTCTCTCCTCAGAAAAGGCAACTCTTCAATTCAGAATTGAGGCAGTCTCAAGGTTGCTAGATGAAGGCAAATCAATGACCGAATTTTCTGCTACGTCATCAAGGGACATTGAATCAGGCAGGCCACTATTTGAAGACAGAATCCGTTCGGGCCGGGAGCACCTAGGTTCATTGCTTCAGCAATTGGATTCCATTTTCATGGCCGGAGCAGTGTTTTTAAGGAGGAACACGACTGCAAGATTATGGTCCCTAGTGTACTTTATTTGCCTCCATTTCTGGGTTATTTATATTCTTATGTCCCATTCTCAACCATCAAATGAGATCAAATCTGGGGCGGTGATATCCTTGGAAAACATTAATAACAACACTTCAGGTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

687

Amino Acids

75.93

Weight (kDa)

6.29

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Golgin_A5 PF09787 445 - 662 5.5e-17 Golgin subfamily A member 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1520
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 536
AccII CGCG 1 cut(s) 422
AccIII TCCGGA 1 cut(s) 607
AclWI GGATC 4 cut(s) 20, 215, 1595, 1608
AcoI YGGCCR 1 cut(s) 1884
AcsI RAATTY 2 cut(s) 478, 1766
AcuI CTGAAG 4 cut(s) 179, 924, 1844, 2037
AfaI GTAC 2 cut(s) 1249, 1940
AfiI CCNNNNNNNGG 3 cut(s) 426, 1681, 1960
AjnI CCWGG 1 cut(s) 1674
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
Alw21I GWGCWC 3 cut(s) 367, 1626, 1845
Alw26I GTCTC 4 cut(s) 32, 1027, 1280, 1735
Alw44I GTGCAC 1 cut(s) 363
AlwI GGATC 4 cut(s) 20, 215, 1595, 1608
AlwNI CAGNNNCTG 3 cut(s) 470, 947, 977
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 4 cut(s) 1077, 1805, 1834, 1884
ApaLI GTGCAC 1 cut(s) 363
ApeKI GCWGC 8 cut(s) 246, 377, 380, 464, 896, 954, 1058, 1061
ApoI RAATTY 2 cut(s) 478, 1766
ArsI GACNNNNNNTTYG 6 cut(s) 104, 136, 1332, 1364, 1639, 1671
AseI ATTAAT 1 cut(s) 2040
Asp700I GAANNNNTTC 2 cut(s) 1636, 1828
AspA2I CCTAGG 1 cut(s) 1846
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 163, 1834, 1929
AsuC2I CCSGG 1 cut(s) 1838
AsuHPI GGTGA 3 cut(s) 647, 683, 2032
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 2 cut(s) 163, 1929
AvrII CCTAGG 1 cut(s) 1846
BaeGI GKGCMC 1 cut(s) 367
BamHI GGATCC 1 cut(s) 1600
BanII GRGCYC 1 cut(s) 1626
BarI GAAGNNNNNNTAC 2 cut(s) 1350, 1382
BbsI GAAGAC 3 cut(s) 924, 1639, 1824
Bbv12I GWGCWC 3 cut(s) 367, 1626, 1845
BbvI GCAGC 8 cut(s) 258, 367, 389, 476, 883, 966, 1070, 1073
BccI CCATC 7 cut(s) 50, 437, 581, 644, 944, 1195, 2002
BceAI ACGGC 1 cut(s) 387
BcgI CGANNNNNNTGC 2 cut(s) 1754, 1788
BciT130I CCWGG 1 cut(s) 1676
BcnI CCSGG 1 cut(s) 1838
BcoDI GTCTC 4 cut(s) 32, 1027, 1280, 1735
BfaI CTAG 9 cut(s) 185, 785, 900, 1046, 1251, 1316, 1742, 1847, 1934
BfoI RGCGCY 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 536
BglII AGATCT 1 cut(s) 1419
BlnI CCTAGG 1 cut(s) 1846
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 2 cut(s) 1676, 1838
Bme18I GGWCC 2 cut(s) 163, 1929
BmgT120I GGNCC 3 cut(s) 163, 1834, 1929
BmiI GGNNCC 3 cut(s) 1467, 1602, 1931
BmrFI CCNGG 2 cut(s) 1676, 1838
BpiI GAAGAC 3 cut(s) 924, 1639, 1824
BplI GAGNNNNNCTC 6 cut(s) 953, 985, 1673, 1705, 1715, 1747
BpmI CTGGAG 1 cut(s) 1610
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 3 cut(s) 1304, 1505, 1717
BpuMI CCSGG 1 cut(s) 1838
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 1431
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 6 cut(s) 403, 420, 1209, 1674, 1846, 2028
BsaWI WCCGGW 2 cut(s) 140, 607
BsaXI ACNNNNNCTCC 8 cut(s) 135, 165, 430, 460, 568, 598, 1493, 1523
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 1681, 1960
Bse1I ACTGG 4 cut(s) 166, 350, 637, 888
Bse3DI GCAATG 3 cut(s) 241, 415, 1853
Bse8I GATNNNNATC 1 cut(s) 1431
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 1 cut(s) 1676
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 6 cut(s) 403, 420, 1209, 1674, 1846, 2028
BseGI GGATG 3 cut(s) 42, 448, 694
BseJI GATNNNNATC 1 cut(s) 1431
BseLI CCNNNNNNNGG 3 cut(s) 426, 1681, 1960
BseMI GCAATG 3 cut(s) 241, 415, 1853
BseMII CTCAG 8 cut(s) 40, 373, 951, 984, 1041, 1423, 1655, 1707
BseNI ACTGG 4 cut(s) 166, 350, 637, 888
BseRI GAGGAG 4 cut(s) 7, 451, 608, 1681
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 8 cut(s) 258, 367, 389, 476, 883, 966, 1070, 1073
BsgI GTGCAG 3 cut(s) 483, 557, 1346
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 4 cut(s) 1079, 1807, 1836, 1886
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 3 cut(s) 367, 1626, 1845
BsiSI CCGG 5 cut(s) 131, 141, 608, 1837, 1887
BslFI GGGAC 3 cut(s) 1802, 1915, 1966
BslI CCNNNNNNNGG 3 cut(s) 426, 1681, 1960
BsmAI GTCTC 4 cut(s) 32, 1027, 1280, 1735
BsmFI GGGAC 3 cut(s) 1802, 1915, 1966
BsnI GGCC 4 cut(s) 1079, 1807, 1836, 1886
Bso31I GGTCTC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 367, 1626, 1845
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
Bsp19I CCATGG 1 cut(s) 1209
BspANI GGCC 4 cut(s) 1079, 1807, 1836, 1886
BspCNI CTCAG 8 cut(s) 39, 372, 952, 983, 1042, 1422, 1654, 1706
BspDI ATCGAT 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 3 cut(s) 1467, 1602, 1931
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 4 cut(s) 20, 215, 1595, 1608
BspT104I TTCGAA 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 3 cut(s) 241, 415, 1853
BsrI ACTGG 4 cut(s) 166, 350, 637, 888
BssECI CCNNGG 6 cut(s) 403, 420, 1209, 1674, 1846, 2028
BssMI GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
BssT1I CCWWGG 3 cut(s) 1209, 1846, 2028
Bst2UI CCWGG 1 cut(s) 1676
Bst4CI ACNGT 3 cut(s) 868, 1102, 1324
Bst6I CTCTTC 3 cut(s) 497, 638, 1713
BstAPI GCANNNNNTGC 2 cut(s) 470, 1511
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 4 cut(s) 66, 375, 420, 1805
BstDEI CTNAG 9 cut(s) 26, 332, 359, 960, 970, 1050, 1409, 1641, 1693
BstDSI CCRYGG 3 cut(s) 403, 420, 1209
BstF5I GGATG 3 cut(s) 42, 448, 694
BstFNI CGCG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 9 cut(s) 15, 57, 61, 223, 850, 1422, 1440, 1603, 2007
BstMAI GTCTC 4 cut(s) 32, 1027, 1280, 1735
BstMBI GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
BstMWI GCNNNNNNNGC 8 cut(s) 225, 470, 1055, 1067, 1076, 1175, 1304, 1511
BstNI CCWGG 1 cut(s) 1676
BstSCI CCNGG 2 cut(s) 1674, 1836
BstSLI GKGCMC 1 cut(s) 367
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 8 cut(s) 258, 367, 389, 476, 883, 966, 1070, 1073
BstV2I GAAGAC 3 cut(s) 924, 1639, 1824
BstX2I RGATCY 3 cut(s) 12, 1419, 1600
BstXI CCANNNNNNTGG 1 cut(s) 1882
BstYI RGATCY 3 cut(s) 12, 1419, 1600
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 4 cut(s) 1079, 1807, 1836, 1886
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 3 cut(s) 403, 420, 1209
BtsCI GGATG 3 cut(s) 42, 448, 694
BtsI GCAGTG 4 cut(s) 154, 466, 1334, 1899
BtsIMutI CAGTG 8 cut(s) 154, 367, 466, 630, 895, 1320, 1334, 1899
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 4 cut(s) 66, 375, 420, 1805
CaiI CAGNNNCTG 3 cut(s) 470, 947, 977
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 163, 1834, 1929
Cfr42I CCGCGG 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 2 cut(s) 1248, 1939
CviAII CATG 5 cut(s) 881, 1210, 1355, 1400, 1882
CviQI GTAC 2 cut(s) 1248, 1939
DdeI CTNAG 9 cut(s) 26, 332, 359, 960, 970, 1050, 1409, 1641, 1693
DpnI GATC 9 cut(s) 14, 56, 60, 222, 849, 1421, 1439, 1602, 2006
DpnII GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
DraI TTTAAA 1 cut(s) 1452
EaeI YGGCCR 1 cut(s) 1884
Eam1104I CTCTTC 3 cut(s) 497, 638, 1713
EarI CTCTTC 3 cut(s) 497, 638, 1713
EciI GGCGGA 2 cut(s) 86, 759
Ecl136II GAGCTC 1 cut(s) 1624
Eco130I CCWWGG 3 cut(s) 1209, 1846, 2028
Eco24I GRGCYC 1 cut(s) 1626
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 2025
Eco47I GGWCC 2 cut(s) 163, 1929
Eco53kI GAGCTC 1 cut(s) 1624
Eco57I CTGAAG 4 cut(s) 179, 924, 1844, 2037
EcoICRI GAGCTC 1 cut(s) 1624
EcoRII CCWGG 1 cut(s) 1674
EcoRV GATATC 1 cut(s) 2025
EcoT14I CCWWGG 3 cut(s) 1209, 1846, 2028
EcoT38I GRGCYC 1 cut(s) 1626
ErhI CCWWGG 3 cut(s) 1209, 1846, 2028
FaeI CATG 5 cut(s) 884, 1213, 1358, 1403, 1885
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 3 cut(s) 1802, 1915, 1966
FatI CATG 5 cut(s) 880, 1209, 1354, 1399, 1881
FauI CCCGC 1 cut(s) 427
FokI GGATG 3 cut(s) 29, 455, 701
FriOI GRGCYC 1 cut(s) 1626
FspBI CTAG 9 cut(s) 185, 785, 900, 1046, 1251, 1316, 1742, 1847, 1934
GlaI GCGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 1610
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 4 cut(s) 1079, 1807, 1836, 1886
HapII CCGG 5 cut(s) 131, 141, 608, 1837, 1887
HhaI GCGC 1 cut(s) 128
Hin1II CATG 5 cut(s) 884, 1213, 1358, 1403, 1885
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpaII CCGG 5 cut(s) 131, 141, 608, 1837, 1887
HphI GGTGA 3 cut(s) 647, 683, 2032
Hpy166II GTNNAC 3 cut(s) 365, 700, 1939
Hpy188III TCNNGA 5 cut(s) 608, 785, 925, 1337, 1411
Hpy8I GTNNAC 3 cut(s) 365, 700, 1939
Hpy99I CGWCG 3 cut(s) 110, 113, 1198
HpyAV CCTTC 8 cut(s) 154, 551, 659, 800, 1006, 1084, 1109, 1742
HpyCH4III ACNGT 3 cut(s) 868, 1102, 1324
HpyCH4IV ACGT 1 cut(s) 1778
HpyCH4V TGCA 7 cut(s) 365, 464, 538, 1292, 1327, 1543, 1919
HpyF10VI GCNNNNNNNGC 8 cut(s) 225, 470, 1055, 1067, 1076, 1175, 1304, 1511
HpyF3I CTNAG 9 cut(s) 26, 332, 359, 960, 970, 1050, 1409, 1641, 1693
HpySE526I ACGT 1 cut(s) 1778
Hsp92II CATG 5 cut(s) 884, 1213, 1358, 1403, 1885
HspAI GCGC 1 cut(s) 126
Kpn2I TCCGGA 1 cut(s) 607
KspI CCGCGG 1 cut(s) 423
Kzo9I GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
LmnI GCTCC 8 cut(s) 133, 216, 746, 763, 1471, 1629, 1840, 1889
Lsp1109I GCAGC 8 cut(s) 258, 367, 389, 476, 883, 966, 1070, 1073
MaeI CTAG 9 cut(s) 185, 785, 900, 1046, 1251, 1316, 1742, 1847, 1934
MaeII ACGT 1 cut(s) 1778
MaeIII GTNAC 4 cut(s) 78, 341, 943, 1531
MalI GATC 9 cut(s) 14, 56, 60, 222, 849, 1421, 1439, 1602, 2006
MboI GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
MfeI CAATTG 1 cut(s) 1865
MflI RGATCY 3 cut(s) 12, 1419, 1600
MhlI GDGCHC 3 cut(s) 367, 1626, 1845
MlyI GAGTC 7 cut(s) 83, 343, 605, 797, 893, 962, 971
MmeI TCCRAC 4 cut(s) 73, 289, 657, 1628
MroI TCCGGA 1 cut(s) 607
MroXI GAANNNNTTC 2 cut(s) 1636, 1828
MseI TTAA 8 cut(s) 212, 240, 489, 1083, 1385, 1451, 1901, 2040
MslI CAYNNNNRTG 2 cut(s) 1577, 1880
MspA1I CMGCKG 2 cut(s) 380, 422
MspI CCGG 5 cut(s) 131, 141, 608, 1837, 1887
MspR9I CCNGG 2 cut(s) 1676, 1838
MunI CAATTG 1 cut(s) 1865
MvaI CCWGG 1 cut(s) 1676
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 8 cut(s) 225, 470, 1055, 1067, 1076, 1175, 1304, 1511
NciI CCSGG 1 cut(s) 1838
NcoI CCATGG 1 cut(s) 1209
NdeII GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
NlaIII CATG 5 cut(s) 884, 1213, 1358, 1403, 1885
NlaIV GGNNCC 3 cut(s) 1467, 1602, 1931
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 341
NspV TTCGAA 1 cut(s) 476
PaqCI CACCTGC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 2 cut(s) 1636, 1828
PleI GAGTC 7 cut(s) 82, 343, 604, 796, 892, 962, 970
PpsI GAGTC 7 cut(s) 82, 343, 604, 796, 892, 962, 970
PshBI ATTAAT 1 cut(s) 2040
PsiI TTATAA 1 cut(s) 1520
Psp124BI GAGCTC 1 cut(s) 1626
Psp6I CCWGG 1 cut(s) 1674
PspGI CCWGG 1 cut(s) 1674
PspN4I GGNNCC 3 cut(s) 1467, 1602, 1931
PspPI GGNCC 3 cut(s) 163, 1834, 1929
PstNI CAGNNNCTG 3 cut(s) 470, 947, 977
PsuI RGATCY 3 cut(s) 12, 1419, 1600
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 1249, 1940
RsaNI GTAC 2 cut(s) 1248, 1939
RseI CAYNNNNRTG 2 cut(s) 1577, 1880
SacI GAGCTC 1 cut(s) 1626
SacII CCGCGG 1 cut(s) 423
SaqAI TTAA 8 cut(s) 212, 240, 489, 1083, 1385, 1451, 1901, 2040
Sau3AI GATC 9 cut(s) 12, 54, 58, 220, 847, 1419, 1437, 1600, 2004
Sau96I GGNCC 3 cut(s) 163, 1834, 1929
ScaI AGTACT 1 cut(s) 1249
SchI GAGTC 7 cut(s) 83, 343, 605, 797, 893, 962, 971
ScrFI CCNGG 2 cut(s) 1676, 1838
SduI GDGCHC 3 cut(s) 367, 1626, 1845
Sfr303I CCGCGG 1 cut(s) 423
SfuI TTCGAA 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 423
SinI GGWCC 2 cut(s) 163, 1929
SmiMI CAYNNNNRTG 2 cut(s) 1577, 1880
SmlI CTYRAG 3 cut(s) 1283, 1484, 1732
SmoI CTYRAG 3 cut(s) 1283, 1484, 1732
SspMI CTAG 9 cut(s) 185, 785, 900, 1046, 1251, 1316, 1742, 1847, 1934
SstI GAGCTC 1 cut(s) 1626
StyD4I CCNGG 2 cut(s) 1674, 1836
StyI CCWWGG 3 cut(s) 1209, 1846, 2028
TaaI ACNGT 3 cut(s) 868, 1102, 1324
TaiI ACGT 1 cut(s) 1781
TaqI TCGA 6 cut(s) 57, 398, 476, 1338, 1369, 1440
TaqII GACCGA 1 cut(s) 1778
TatI WGTACW 2 cut(s) 1247, 1938
TauI GCSGC 4 cut(s) 35, 71, 1220, 1466
Tru1I TTAA 8 cut(s) 212, 240, 489, 1083, 1385, 1451, 1901, 2040
Tru9I TTAA 8 cut(s) 212, 240, 489, 1083, 1385, 1451, 1901, 2040
TscAI CASTG 8 cut(s) 154, 367, 466, 637, 895, 1327, 1334, 1899
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 8 cut(s) 246, 377, 380, 464, 896, 954, 1058, 1061
Tsp45I GTSAC 1 cut(s) 341
TspGWI ACGGA 3 cut(s) 97, 634, 1817
TspRI CASTG 8 cut(s) 154, 367, 466, 637, 895, 1327, 1334, 1899
VneI GTGCAC 1 cut(s) 363
VpaK11BI GGWCC 2 cut(s) 163, 1929
VspI ATTAAT 1 cut(s) 2040
XapI RAATTY 2 cut(s) 478, 1766
XbaI TCTAGA 1 cut(s) 784
XmaJI CCTAGG 1 cut(s) 1846
XmnI GAANNNNTTC 2 cut(s) 1636, 1828
XspI CTAG 9 cut(s) 185, 785, 900, 1046, 1251, 1316, 1742, 1847, 1934
ZrmI AGTACT 1 cut(s) 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.