Rorug02G0271300

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Forward (+)
28790656 .. 28796476
5821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0271300.1

Sequence Viewer

Length: 2697 bp
ATGATTTTGTACCGGTGGGAGTGTTTAATGTACCTTAAAGTAACTTCTGCAAAACAAATTATCAGTGGAAAGAACAGTGCGGATAGGTCTCTCTTGGCAGATCTTTTGTACTGGGTGTCTCAAAATCCCCCTCCAGCACATCTATTTTTAATTTCTGGTGATAGAGACTTTTCTAGCATTTTACACAAGTTAAGAATGAACAACTACAATATATTGCTAGCTAGTCCAGAAAATGCACCTGGTGTCCTTTGTAGTGCTGCAAGTATCATGTGGCCTTGGCATGATCTGCTTATGGGTGAAAATCTCACAGGAAGGTATTTCAACCAACCACCTGATGGTCCCTATGGTTCTTGGTATGGCCATTACAAGGCGCCTCTTGAAGACCCATTCACATTCACTGAGCAGCCAGCAGTTTCCCAGGCTGAAAGGCTACCTGAACCTGGTTCTGATTCTAAACTTCAAATGATTCCTACTGGCTCAGAATGTAAGCCTTCTCCAATTCCTAAAGCTGTCGTGAAGCAAATTCGCCATATATTGAAGTTACACCCTAAAGGAATCTCTAGTTCTGAACTTCGTGCACAGTTGGAAAAATATAATGTGAGCTTGGAAAGACCATACTATGGATATAAAAAGTTTTCCTGCTTTCTTGCATCAATGCCTGATATTTTGAGGCTCAAGCCAGTAGGTTATGGAAATTATATGATACACGGTGTCACCCCAAAATCAGCTGAGTCATTCAAGCGGAATCCAGGTGATAGTGATAAAGGACACCAGTTGGATTGTGAGGACACATCTACTAGTGATACTGTGAGTAGAAAGTTATCATTACCTACATCTCCTGAACCAAAGTTGAAGGAGCCTTATCAAGAATTGCAACAGCCCATTTTACTCAATAATACTTTTACTAGTCCTGTGGATGGGAAGTCACTGTCGCCTCCTGCCCCTGAGAAACTTTCTTCCATTGATGAGAAGTCACTATCCCCTCATTCTCCTGACCATATGAAGCCTTTTCTAGGGCCGATTGATGAAAAAGGTGTTGGAGTAGCTGAAGCACAAGAAACTGAGCCTGATTTGCCTCCTGCAGTTGTACAAGAATTTGAGTCTGATGTTGGTTATTTTAAGAGGATTTGGAGAAACTGGTTTGGCAGTAGAGCTGACGTTTCAGGTACTAGTCACAACAATCAAGAACAAAAACACACTTCTGGAGATGGTACCGAGAAGGAAGGTCATGAAACTCTTGAGAAGCATTGTATGAATGTTGATAACTCTGGAAAGGAAACATGTGAGGAAAAGACATCTACGAGTCAGCTTGGTGATCCAGTACCTCCAGCCTCATCTTCTTCATCCCATAATGAATCTGCCCTGGACAGTAAAACTGCAACAAGCTCTGAAGCGAATGCTGATAAATCAAATCCAGGGTTTTTTAACCAGATGGTAAATTGGTGTAAATTTTGGAGAAGTAACCCGAGTGATCAATCCTGTGACAGAGCGAAGCTGATGGAATCTCACTCTCAAGAGCACAAGCTCTTCTCGAATTCTTTTTGGGGAGACATGGAATCTTTTATGATCACGCCTAAAGGATCAGTTATTGTCTCTGAATCAAGGACCAGGGAAGAGATGGCTCTCAATCTTCAAAAGGAAGGGCCTTTGGTTCTTAGATCTCTTGCAAAGAGTGATCTCCTTCAGTTGGTAGATTTGTTAATATTAGAAAAGAAATGGGTGGAAGAATGCCCCTCCCAAACGTTACCATTCAAACTTGCCCAACGTGAGGGAGAGACATCTTTGAATCATTCCCATCATTCAAGTAGGTTGAGTTCCATCTTTTCAGGAAGACCATCCAAAGATGAAATGCAGAGAACACCAGGACATGATGGAGAGGAAAAATGCAAGAATATTCCTCATACTGGAGTTTCACTACCTTTCGTCAAGAATCCTCTTTCAGAAGAGTCTAGAAATGAGATACTAGCTGACTGCCAGAAGCTTGTAAACGAGAAGTTAAAGGAGTTTCCAAATGGATATAGCATTGGATTATTCAGAAAACAATTCCGTGATAGATATGGGTACCACCTCGATTTGAAAATGCTTGGTTACGAAAAGTTGGCAAATCTACTAGAAACATTGGATGGAGTAAAAGTAGGGTCTTCTTTCATCTTTCCTCTTTATAAGGTTCCTGAAGTTTTTGATAGGGAGACTGTTCCTGAAATCAAGAAACATACGGTCAGTCATCCCGTGGTTAATTCAGATAATCAATTTTCTGGTTCAAGAAAGGAAGATGAGAGTGTCTCACTGTGGGATGAGCTGGGCCCTGTTAGCAACACTACATTTAATAAAAATGTAGTGGAAGTAGCACCAAGGAGGAAAGAAATGGGATCAGCAGGTTTTGATTATGAACCATCCGTTTCAGAATTTTCAGATTCAGATGGAGAGGCATCGCCTGGAACTGCATTGGAAGGACAAGGCATGGGCAGAGTGAACAAGGAAGAGAGCTCTCTCTTGCAAATCCTTGATTCGTGGCATAGCAGTAAGGACAACTCAAAGACGGTTGATAACAGTCAGGCATCTCCTTCATCTGGAGTTGGCACTAATCTGGGATACTATTCACGCAAGTCAACACCTGCAAAGATCTACAATTTTGTTTCAGAAGTATCTGTTGATGACAAGGACAAGAAACCAAGTGAACCGAGGATGGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

898

Amino Acids

100.25

Weight (kDa)

5.78

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 16 - 88 3e-13 NYN domain
OST-HTH PF12872 168 - 234 9.5e-09 OST-HTH/LOTUS domain
OHA PF14418 530 - 576 4.3e-07 OST-HTH Associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2163
AarI CACCTGC 1 cut(s) 2623
Acc36I ACCTGC 2 cut(s) 2366, 2623
Acc65I GGTACC 2 cut(s) 1211, 2061
AccB1I GGYRCC 3 cut(s) 370, 1211, 2061
AccB7I CCANNNNNTGG 2 cut(s) 335, 620
AciI CCGC 2 cut(s) 80, 742
AclI AACGTT 1 cut(s) 1742
AclWI GGATC 3 cut(s) 1310, 1588, 2377
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 5 cut(s) 522, 1094, 1448, 1534, 2405
AcuI CTGAAG 4 cut(s) 1068, 1410, 1667, 2193
AcyI GRCGYC 1 cut(s) 371
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 8 cut(s) 11, 32, 110, 1089, 1168, 1213, 1323, 2063
AflIII ACRYGT 1 cut(s) 1280
AgeI ACCGGT 1 cut(s) 12
AhlI ACTAGT 3 cut(s) 797, 905, 1169
AjnI CCWGG 9 cut(s) 238, 417, 439, 748, 1362, 1414, 1607, 1861, 2434
AjuI GAANNNNNNNTTGG 2 cut(s) 1020, 1052
Alw21I GWGCWC 3 cut(s) 580, 1521, 2489
Alw26I GTCTC 8 cut(s) 93, 123, 159, 1542, 1597, 1769, 2183, 2287
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 3 cut(s) 1310, 1588, 2377
Ama87I CYCGRG 1 cut(s) 1465
AoxI GGCC 5 cut(s) 272, 358, 1016, 1643, 2302
ApaI GGGCCC 1 cut(s) 2306
ApaLI GTGCAC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 257, 403
ApoI RAATTY 5 cut(s) 522, 1094, 1448, 1534, 2405
AsiGI ACCGGT 1 cut(s) 12
Asp718I GGTACC 2 cut(s) 1211, 2061
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 6 cut(s) 338, 1016, 1605, 1643, 2302, 2303
AsuHPI GGTGA 5 cut(s) 170, 308, 706, 764, 1325
AsuNHI GCTAGC 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 1465
AvaII GGWCC 2 cut(s) 338, 1605
BaeGI GKGCMC 2 cut(s) 580, 2306
BalI TGGCCA 1 cut(s) 360
BanI GGYRCC 3 cut(s) 370, 1211, 2061
BanII GRGCYC 2 cut(s) 2306, 2489
BbsI GAAGAC 3 cut(s) 387, 1837, 2133
Bbv12I GWGCWC 3 cut(s) 580, 1521, 2489
BbvI GCAGC 2 cut(s) 244, 415
BciT130I CCWGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
BciVI GTATCC 1 cut(s) 2585
BclI TGATCA 2 cut(s) 1471, 1566
BcoDI GTCTC 8 cut(s) 93, 123, 159, 1542, 1597, 1769, 2183, 2287
BcuI ACTAGT 3 cut(s) 797, 905, 1169
BfmI CTRYAG 1 cut(s) 1080
BfoI RGCGCY 1 cut(s) 374
BfuAI ACCTGC 2 cut(s) 2366, 2623
BfuI GTATCC 1 cut(s) 2585
BglII AGATCT 3 cut(s) 100, 1658, 2622
BisI GCNGC 2 cut(s) 258, 404
BlsI GCNGC 2 cut(s) 259, 405
Bme1390I CCNGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
Bme18I GGWCC 2 cut(s) 338, 1605
BmeT110I CYCGRG 1 cut(s) 1465
BmgT120I GGNCC 6 cut(s) 338, 1016, 1605, 1643, 2302, 2303
BmiI GGNNCC 7 cut(s) 340, 372, 858, 1213, 2063, 2169, 2304
BmrFI CCNGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 3 cut(s) 659, 2438, 2567
BmtI GCTAGC 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 3 cut(s) 387, 1837, 2133
BplI GAGNNNNNCTC 2 cut(s) 2267, 2299
BpmI CTGGAG 5 cut(s) 117, 1224, 1311, 1926, 2592
BpuEI CTTGAG 3 cut(s) 659, 1259, 1497
BsaHI GRCGYC 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 8 cut(s) 275, 417, 1362, 1415, 1608, 2229, 2351, 2681
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 2118, 2148
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 7 cut(s) 116, 478, 680, 772, 1142, 1319, 1909
BseBI CCWGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
BseDI CCNNGG 8 cut(s) 275, 417, 1362, 1415, 1608, 2229, 2351, 2681
BseGI GGATG 8 cut(s) 922, 1343, 1835, 2128, 2224, 2299, 2393, 2691
BseMII CTCAG 5 cut(s) 390, 492, 720, 936, 1053
BseNI ACTGG 7 cut(s) 116, 478, 680, 772, 1142, 1319, 1909
BseSI GKGCMC 2 cut(s) 580, 2306
BseXI GCAGC 2 cut(s) 244, 415
BseYI CCCAGC 1 cut(s) 2299
BshFI GGCC 5 cut(s) 274, 360, 1018, 1645, 2304
BshNI GGYRCC 3 cut(s) 370, 1211, 2061
BshTI ACCGGT 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 580, 1521, 2489
BsiHKCI CYCGRG 1 cut(s) 1465
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 8 cut(s) 93, 123, 159, 1542, 1597, 1769, 2183, 2287
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 2 cut(s) 1402, 1733
BsnI GGCC 5 cut(s) 274, 360, 1018, 1645, 2304
Bso31I GGTCTC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 1465
Bsp120I GGGCCC 1 cut(s) 2302
Bsp1286I GDGCHC 4 cut(s) 580, 1521, 2306, 2489
Bsp1407I TGTACA 1 cut(s) 1087
BspACI CCGC 2 cut(s) 80, 742
BspANI GGCC 5 cut(s) 274, 360, 1018, 1645, 2304
BspCNI CTCAG 5 cut(s) 391, 491, 721, 937, 1054
BspHI TCATGA 1 cut(s) 1228
BspLI GGNNCC 7 cut(s) 340, 372, 858, 1213, 2063, 2169, 2304
BspMAI CTGCAG 1 cut(s) 1084
BspMI ACCTGC 2 cut(s) 2366, 2623
BspOI GCTAGC 1 cut(s) 221
BspPI GGATC 3 cut(s) 1310, 1588, 2377
BspQI GCTCTTC 1 cut(s) 1532
BspT107I GGYRCC 3 cut(s) 370, 1211, 2061
BspTNI GGTCTC 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 1087
BsrI ACTGG 7 cut(s) 116, 478, 680, 772, 1142, 1319, 1909
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 8 cut(s) 275, 417, 1362, 1415, 1608, 2229, 2351, 2681
BssNI GRCGYC 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 275, 2351
Bst2UI CCWGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
Bst6I CTCTTC 4 cut(s) 1532, 1608, 1938, 2475
BstACI GRCGYC 1 cut(s) 371
BstAPI GCANNNNNTGC 1 cut(s) 286
BstAUI TGTACA 1 cut(s) 1087
BstC8I GCNNGC 2 cut(s) 219, 408
BstDEI CTNAG 6 cut(s) 399, 478, 729, 945, 1062, 1655
BstDSI CCRYGG 1 cut(s) 2229
BstENI CCTNNNNNAGG 1 cut(s) 1011
BstF5I GGATG 8 cut(s) 922, 1343, 1835, 2128, 2224, 2299, 2393, 2691
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 1 cut(s) 373
BstMAI GTCTC 8 cut(s) 93, 123, 159, 1542, 1597, 1769, 2183, 2287
BstMWI GCNNNNNNNGC 3 cut(s) 286, 1072, 2310
BstNI CCWGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
BstNSI RCATGY 1 cut(s) 1284
BstSCI CCNGG 9 cut(s) 238, 417, 439, 748, 1362, 1414, 1607, 1861, 2434
BstSFI CTRYAG 1 cut(s) 1080
BstSLI GKGCMC 2 cut(s) 580, 2306
BstV1I GCAGC 2 cut(s) 244, 415
BstV2I GAAGAC 3 cut(s) 387, 1837, 2133
BstX2I RGATCY 3 cut(s) 100, 1658, 2622
BstYI RGATCY 3 cut(s) 100, 1658, 2622
BsuI GTATCC 1 cut(s) 2585
BsuRI GGCC 5 cut(s) 274, 360, 1018, 1645, 2304
BtgI CCRYGG 1 cut(s) 2229
BtgZI GCGATG 1 cut(s) 2415
BtsCI GGATG 8 cut(s) 922, 1343, 1835, 2128, 2224, 2299, 2393, 2691
BtsIMutI CAGTG 5 cut(s) 70, 82, 396, 926, 2285
BveI ACCTGC 2 cut(s) 2366, 2623
Cac8I GCNNGC 2 cut(s) 219, 408
CciI TCATGA 1 cut(s) 1228
CfoI GCGC 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 12
Cfr13I GGNCC 6 cut(s) 338, 1016, 1605, 1643, 2302, 2303
CsiI ACCWGGT 2 cut(s) 238, 439
Csp6I GTAC 8 cut(s) 10, 31, 109, 1088, 1167, 1212, 1322, 2062
CspAI ACCGGT 1 cut(s) 12
CviAII CATG 7 cut(s) 268, 281, 1229, 1281, 1552, 1868, 2461
CviQI GTAC 8 cut(s) 10, 31, 109, 1088, 1167, 1212, 1322, 2062
DdeI CTNAG 6 cut(s) 399, 478, 729, 945, 1062, 1655
DinI GGCGCC 1 cut(s) 372
DraIII CACNNNGTG 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 4 cut(s) 1532, 1608, 1938, 2475
EarI CTCTTC 4 cut(s) 1532, 1608, 1938, 2475
Ecl136II GAGCTC 1 cut(s) 2487
Eco130I CCWWGG 2 cut(s) 275, 2351
Eco24I GRGCYC 2 cut(s) 2306, 2489
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 338, 1605
Eco53kI GAGCTC 1 cut(s) 2487
Eco57I CTGAAG 4 cut(s) 1068, 1410, 1667, 2193
Eco88I CYCGRG 1 cut(s) 1465
EcoICRI GAGCTC 1 cut(s) 2487
EcoNI CCTNNNNNAGG 1 cut(s) 1011
EcoO109I RGGNCCY 2 cut(s) 1643, 2303
EcoRI GAATTC 1 cut(s) 1534
EcoRII CCWGG 9 cut(s) 238, 417, 439, 748, 1362, 1414, 1607, 1861, 2434
EcoT14I CCWWGG 2 cut(s) 275, 2351
EcoT38I GRGCYC 2 cut(s) 2306, 2489
EgeI GGCGCC 1 cut(s) 372
EheI GGCGCC 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 275, 2351
FaeI CATG 7 cut(s) 271, 284, 1232, 1284, 1555, 1871, 2464
FaqI GGGAC 1 cut(s) 324
FatI CATG 7 cut(s) 267, 280, 1228, 1280, 1551, 1867, 2460
FauNDI CATATG 1 cut(s) 999
FbaI TGATCA 2 cut(s) 1471, 1566
Fnu4HI GCNGC 2 cut(s) 258, 404
FokI GGATG 7 cut(s) 929, 1330, 1822, 2135, 2211, 2306, 2380
FriOI GRGCYC 2 cut(s) 2306, 2489
Fsp4HI GCNGC 2 cut(s) 258, 404
GlaI GCGC 1 cut(s) 372
GluI GCNGC 2 cut(s) 258, 404
GsaI CCCAGC 1 cut(s) 2303
GsuI CTGGAG 5 cut(s) 117, 1224, 1311, 1926, 2592
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 5 cut(s) 274, 360, 1018, 1645, 2304
HapII CCGG 1 cut(s) 13
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 7 cut(s) 271, 284, 1232, 1284, 1555, 1871, 2464
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 1 cut(s) 2610
HindII GTYRAC 1 cut(s) 2610
HindIII AAGCTT 1 cut(s) 1979
HpaII CCGG 1 cut(s) 13
HphI GGTGA 5 cut(s) 170, 308, 706, 764, 1325
Hpy166II GTNNAC 5 cut(s) 578, 1987, 2473, 2610, 2678
Hpy8I GTNNAC 5 cut(s) 578, 1987, 2473, 2610, 2678
HpyAV CCTTC 9 cut(s) 306, 501, 847, 1213, 1217, 1634, 1691, 2444, 2574
HpyCH4IV ACGT 3 cut(s) 1158, 1742, 1765
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 1072, 2310
HpyF3I CTNAG 6 cut(s) 399, 478, 729, 945, 1062, 1655
HpySE526I ACGT 3 cut(s) 1158, 1742, 1765
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 7 cut(s) 271, 284, 1232, 1284, 1555, 1871, 2464
HspAI GCGC 1 cut(s) 371
KasI GGCGCC 1 cut(s) 370
KpnI GGTACC 2 cut(s) 1215, 2065
Ksp22I TGATCA 2 cut(s) 1471, 1566
LguI GCTCTTC 1 cut(s) 1532
LmnI GCTCC 1 cut(s) 856
Lsp1109I GCAGC 2 cut(s) 244, 415
LweI GCATC 3 cut(s) 659, 2438, 2567
MabI ACCWGGT 2 cut(s) 238, 439
MaeII ACGT 3 cut(s) 1158, 1742, 1765
MflI RGATCY 3 cut(s) 100, 1658, 2622
MhlI GDGCHC 4 cut(s) 580, 1521, 2306, 2489
MlsI TGGCCA 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 360
Mly113I GGCGCC 1 cut(s) 371
MlyI GAGTC 4 cut(s) 740, 1109, 1312, 1955
MmeI TCCRAC 3 cut(s) 564, 756, 1018
Mox20I TGGCCA 1 cut(s) 360
MscI TGGCCA 1 cut(s) 360
Msp20I TGGCCA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
Mva1269I GAATGC 2 cut(s) 1402, 1733
MvaI CCWGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
MwoI GCNNNNNNNGC 3 cut(s) 286, 1072, 2310
NarI GGCGCC 1 cut(s) 371
NdeI CATATG 1 cut(s) 999
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 7 cut(s) 271, 284, 1232, 1284, 1555, 1871, 2464
NlaIV GGNNCC 7 cut(s) 340, 372, 858, 1213, 2063, 2169, 2304
NmuCI GTSAC 5 cut(s) 712, 924, 972, 1172, 1481
NspI RCATGY 1 cut(s) 1284
PagI TCATGA 1 cut(s) 1228
PaqCI CACCTGC 1 cut(s) 2623
PciI ACATGT 1 cut(s) 1280
PciSI GCTCTTC 1 cut(s) 1532
PctI GAATGC 2 cut(s) 1402, 1733
PflMI CCANNNNNTGG 2 cut(s) 335, 620
PinAI ACCGGT 1 cut(s) 12
PkrI GCNGC 2 cut(s) 259, 405
PleI GAGTC 4 cut(s) 739, 1108, 1311, 1954
PluTI GGCGCC 1 cut(s) 374
PpsI GAGTC 4 cut(s) 739, 1108, 1311, 1954
PscI ACATGT 1 cut(s) 1280
PsiI TTATAA 1 cut(s) 2163
Psp124BI GAGCTC 1 cut(s) 2489
Psp1406I AACGTT 1 cut(s) 1742
Psp6I CCWGG 9 cut(s) 238, 417, 439, 748, 1362, 1414, 1607, 1861, 2434
PspFI CCCAGC 1 cut(s) 2299
PspGI CCWGG 9 cut(s) 238, 417, 439, 748, 1362, 1414, 1607, 1861, 2434
PspN4I GGNNCC 7 cut(s) 340, 372, 858, 1213, 2063, 2169, 2304
PspOMI GGGCCC 1 cut(s) 2302
PspPI GGNCC 6 cut(s) 338, 1016, 1605, 1643, 2302, 2303
PsrI GAACNNNNNNTAC 2 cut(s) 1798, 1830
PstI CTGCAG 1 cut(s) 1084
PsuI RGATCY 3 cut(s) 100, 1658, 2622
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 8 cut(s) 11, 32, 110, 1089, 1168, 1213, 1323, 2063
RsaNI GTAC 8 cut(s) 10, 31, 109, 1088, 1167, 1212, 1322, 2062
SacI GAGCTC 1 cut(s) 2489
SapI GCTCTTC 1 cut(s) 1532
SatI GCNGC 2 cut(s) 258, 404
Sau96I GGNCC 6 cut(s) 338, 1016, 1605, 1643, 2302, 2303
SchI GAGTC 4 cut(s) 740, 1109, 1312, 1955
ScrFI CCNGG 9 cut(s) 240, 419, 441, 750, 1364, 1416, 1609, 1863, 2436
SduI GDGCHC 4 cut(s) 580, 1521, 2306, 2489
SexAI ACCWGGT 2 cut(s) 238, 439
SfaNI GCATC 3 cut(s) 659, 2438, 2567
SfcI CTRYAG 1 cut(s) 1080
SfoI GGCGCC 1 cut(s) 372
SinI GGWCC 2 cut(s) 338, 1605
SmlI CTYRAG 3 cut(s) 674, 1238, 1512
SmoI CTYRAG 3 cut(s) 674, 1238, 1512
SpeI ACTAGT 3 cut(s) 797, 905, 1169
SsiI CCGC 2 cut(s) 80, 742
SspDI GGCGCC 1 cut(s) 370
SspI AATATT 2 cut(s) 1704, 1894
SstI GAGCTC 1 cut(s) 2489
StyD4I CCNGG 9 cut(s) 238, 417, 439, 748, 1362, 1414, 1607, 1861, 2434
StyI CCWWGG 2 cut(s) 275, 2351
TaiI ACGT 3 cut(s) 1161, 1745, 1768
TaqI TCGA 2 cut(s) 1532, 2070
TatI WGTACW 2 cut(s) 108, 1087
TscAI CASTG 5 cut(s) 70, 82, 403, 933, 2292
TseFI GTSAC 5 cut(s) 712, 924, 972, 1172, 1481
TseI GCWGC 2 cut(s) 257, 403
Tsp45I GTSAC 5 cut(s) 712, 924, 972, 1172, 1481
TspGWI ACGGA 2 cut(s) 2036, 2386
TspRI CASTG 5 cut(s) 70, 82, 403, 933, 2292
Van91I CCANNNNNTGG 2 cut(s) 335, 620
VneI GTGCAC 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 338, 1605
XagI CCTNNNNNAGG 1 cut(s) 1011
XapI RAATTY 5 cut(s) 522, 1094, 1448, 1534, 2405
XbaI TCTAGA 1 cut(s) 1949
XceI RCATGY 1 cut(s) 1284
XcmI CCANNNNNNNNNTGG 2 cut(s) 332, 1615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.