Nuclear ribonuclease
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-rbx1 | PF12678 | 131 - 179 | 6.1e-09 | RING-H2 zinc finger domain |
| zf-RING_2 | PF13639 | 137 - 179 | 3.5e-15 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 138 - 178 | 2e-09 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_11 | PF17123 | 138 - 165 | 3.2e-08 | RING-like zinc finger |
| zf-C3HC4 | PF00097 | 138 - 178 | 1.6e-06 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 138 - 176 | 1.3e-06 | RING-type zinc-finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 257 |
| AcoI | YGGCCR | 1 cut(s) | 279 |
| AcsI | RAATTY | 2 cut(s) | 235, 355 |
| AcuI | CTGAAG | 1 cut(s) | 156 |
| AfaI | GTAC | 3 cut(s) | 46, 314, 388 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 254 |
| AgsI | TTSAA | 1 cut(s) | 508 |
| AhlI | ACTAGT | 1 cut(s) | 512 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 477, 509 |
| AlwI | GGATC | 1 cut(s) | 257 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 2 cut(s) | 279, 318 |
| ApeKI | GCWGC | 3 cut(s) | 205, 397, 400 |
| ApoI | RAATTY | 2 cut(s) | 235, 355 |
| AseI | ATTAAT | 1 cut(s) | 33 |
| AspLEI | GCGC | 1 cut(s) | 76 |
| AsuII | TTCGAA | 1 cut(s) | 173 |
| BauI | CACGAG | 1 cut(s) | 77 |
| BbsI | GAAGAC | 1 cut(s) | 515 |
| BbvI | GCAGC | 3 cut(s) | 192, 409, 412 |
| BccI | CCATC | 1 cut(s) | 434 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 272, 282, 306, 316 |
| BcuI | ACTAGT | 1 cut(s) | 512 |
| BfaI | CTAG | 2 cut(s) | 69, 513 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BfoI | RGCGCY | 1 cut(s) | 77 |
| BisI | GCNGC | 3 cut(s) | 206, 398, 401 |
| BlsI | GCNGC | 3 cut(s) | 207, 399, 402 |
| BmsI | GCATC | 1 cut(s) | 294 |
| BpiI | GAAGAC | 1 cut(s) | 515 |
| Bpu14I | TTCGAA | 1 cut(s) | 173 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 254 |
| Bse3DI | GCAATG | 2 cut(s) | 190, 300 |
| BseGI | GGATG | 2 cut(s) | 121, 445 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BseMI | GCAATG | 2 cut(s) | 190, 300 |
| BseXI | GCAGC | 3 cut(s) | 192, 409, 412 |
| Bsh1285I | CGRYCG | 1 cut(s) | 43 |
| BshFI | GGCC | 2 cut(s) | 281, 320 |
| BsiEI | CGRYCG | 1 cut(s) | 43 |
| BsiWI | CGTACG | 1 cut(s) | 312 |
| BslFI | GGGAC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 254 |
| BsmFI | GGGAC | 1 cut(s) | 510 |
| BsnI | GGCC | 2 cut(s) | 281, 320 |
| Bsp119I | TTCGAA | 1 cut(s) | 173 |
| Bsp143I | GATC | 2 cut(s) | 40, 262 |
| BspANI | GGCC | 2 cut(s) | 281, 320 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspMAI | CTGCAG | 1 cut(s) | 337 |
| BspPI | GGATC | 1 cut(s) | 257 |
| BspT104I | TTCGAA | 1 cut(s) | 173 |
| BsrDI | GCAATG | 2 cut(s) | 190, 300 |
| BssMI | GATC | 2 cut(s) | 40, 262 |
| BssSI | CACGAG | 1 cut(s) | 77 |
| Bst2BI | CACGAG | 1 cut(s) | 77 |
| BstBI | TTCGAA | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 3 cut(s) | 101, 279, 461 |
| BstF5I | GGATG | 2 cut(s) | 121, 445 |
| BstH2I | RGCGCY | 1 cut(s) | 77 |
| BstHHI | GCGC | 1 cut(s) | 76 |
| BstKTI | GATC | 2 cut(s) | 43, 265 |
| BstMBI | GATC | 2 cut(s) | 40, 262 |
| BstMCI | CGRYCG | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 465 |
| BstNSI | RCATGY | 1 cut(s) | 103 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 3 cut(s) | 192, 409, 412 |
| BstV2I | GAAGAC | 1 cut(s) | 515 |
| BsuRI | GGCC | 2 cut(s) | 281, 320 |
| BtsCI | GGATG | 2 cut(s) | 121, 445 |
| BtsIMutI | CAGTG | 1 cut(s) | 506 |
| Cac8I | GCNNGC | 3 cut(s) | 101, 279, 461 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 1 cut(s) | 76 |
| Csp6I | GTAC | 3 cut(s) | 45, 313, 387 |
| CviAII | CATG | 5 cut(s) | 100, 202, 424, 482, 551 |
| CviJI | RGCY | 2 cut(s) | 281, 320 |
| CviKI_1 | RGCY | 2 cut(s) | 281, 320 |
| CviQI | GTAC | 3 cut(s) | 45, 313, 387 |
| DpnI | GATC | 2 cut(s) | 42, 264 |
| DpnII | GATC | 2 cut(s) | 40, 262 |
| EaeI | YGGCCR | 1 cut(s) | 279 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 1 cut(s) | 156 |
| FaeI | CATG | 5 cut(s) | 103, 205, 427, 485, 554 |
| FaiI | YATR | 7 cut(s) | 101, 203, 224, 233, 425, 483, 552 |
| FaqI | GGGAC | 1 cut(s) | 510 |
| FatI | CATG | 5 cut(s) | 99, 201, 423, 481, 550 |
| Fnu4HI | GCNGC | 3 cut(s) | 206, 398, 401 |
| FokI | GGATG | 2 cut(s) | 108, 452 |
| Fsp4HI | GCNGC | 3 cut(s) | 206, 398, 401 |
| FspBI | CTAG | 2 cut(s) | 69, 513 |
| GlaI | GCGC | 1 cut(s) | 75 |
| GluI | GCNGC | 3 cut(s) | 206, 398, 401 |
| HaeII | RGCGCY | 1 cut(s) | 77 |
| HaeIII | GGCC | 2 cut(s) | 281, 320 |
| HhaI | GCGC | 1 cut(s) | 76 |
| Hin1II | CATG | 5 cut(s) | 103, 205, 427, 485, 554 |
| Hin6I | GCGC | 1 cut(s) | 74 |
| HinP1I | GCGC | 1 cut(s) | 74 |
| HinfI | GANTC | 2 cut(s) | 62, 341 |
| Hpy166II | GTNNAC | 1 cut(s) | 448 |
| Hpy188I | TCNGA | 1 cut(s) | 61 |
| Hpy188III | TCNNGA | 2 cut(s) | 110, 482 |
| Hpy8I | GTNNAC | 1 cut(s) | 448 |
| Hpy99I | CGWCG | 2 cut(s) | 277, 304 |
| HpyAV | CCTTC | 1 cut(s) | 377 |
| HpyCH4IV | ACGT | 4 cut(s) | 87, 272, 311, 450 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 293, 307, 335, 423 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 465 |
| HpySE526I | ACGT | 4 cut(s) | 87, 272, 311, 450 |
| Hsp92II | CATG | 5 cut(s) | 103, 205, 427, 485, 554 |
| HspAI | GCGC | 1 cut(s) | 74 |
| Kzo9I | GATC | 2 cut(s) | 40, 262 |
| LpnPI | CCDG | 7 cut(s) | 109, 123, 138, 144, 263, 334, 345 |
| Lsp1109I | GCAGC | 3 cut(s) | 192, 409, 412 |
| LweI | GCATC | 1 cut(s) | 294 |
| MaeI | CTAG | 2 cut(s) | 69, 513 |
| MaeII | ACGT | 4 cut(s) | 87, 272, 311, 450 |
| MaeIII | GTNAC | 3 cut(s) | 16, 83, 515 |
| MalI | GATC | 2 cut(s) | 42, 264 |
| MboI | GATC | 2 cut(s) | 40, 262 |
| MboII | GAAGA | 4 cut(s) | 149, 336, 497, 520 |
| MluCI | AATT | 4 cut(s) | 129, 225, 235, 355 |
| MnlI | CCTC | 5 cut(s) | 259, 310, 421, 430, 558 |
| MseI | TTAA | 2 cut(s) | 33, 556 |
| MslI | CAYNNNNRTG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 465 |
| NdeII | GATC | 2 cut(s) | 40, 262 |
| NlaIII | CATG | 5 cut(s) | 103, 205, 427, 485, 554 |
| NmuCI | GTSAC | 1 cut(s) | 515 |
| NspI | RCATGY | 1 cut(s) | 103 |
| NspV | TTCGAA | 1 cut(s) | 173 |
| PaeI | GCATGC | 1 cut(s) | 103 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 84, 308 |
| PfeI | GAWTC | 2 cut(s) | 62, 341 |
| Pfl23II | CGTACG | 1 cut(s) | 312 |
| PkrI | GCNGC | 3 cut(s) | 207, 399, 402 |
| Ple19I | CGATCG | 1 cut(s) | 43 |
| PshBI | ATTAAT | 1 cut(s) | 33 |
| PspLI | CGTACG | 1 cut(s) | 312 |
| PstI | CTGCAG | 1 cut(s) | 337 |
| PvuI | CGATCG | 1 cut(s) | 43 |
| RsaI | GTAC | 3 cut(s) | 46, 314, 388 |
| RsaNI | GTAC | 3 cut(s) | 45, 313, 387 |
| RseI | CAYNNNNRTG | 1 cut(s) | 200 |
| SaqAI | TTAA | 2 cut(s) | 33, 556 |
| SatI | GCNGC | 3 cut(s) | 206, 398, 401 |
| Sau3AI | GATC | 2 cut(s) | 40, 262 |
| SetI | ASST | 6 cut(s) | 90, 275, 314, 328, 388, 453 |
| SfaNI | GCATC | 1 cut(s) | 294 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| SfuI | TTCGAA | 1 cut(s) | 173 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 200 |
| SpeI | ACTAGT | 1 cut(s) | 512 |
| SphI | GCATGC | 1 cut(s) | 103 |
| Sse9I | AATT | 4 cut(s) | 129, 225, 235, 355 |
| SspMI | CTAG | 2 cut(s) | 69, 513 |
| TaiI | ACGT | 4 cut(s) | 90, 275, 314, 453 |
| TaqI | TCGA | 4 cut(s) | 39, 167, 173, 302 |
| TasI | AATT | 4 cut(s) | 129, 225, 235, 355 |
| TfiI | GAWTC | 2 cut(s) | 62, 341 |
| Tru1I | TTAA | 2 cut(s) | 33, 556 |
| Tru9I | TTAA | 2 cut(s) | 33, 556 |
| TscAI | CASTG | 1 cut(s) | 506 |
| TseFI | GTSAC | 1 cut(s) | 515 |
| TseI | GCWGC | 3 cut(s) | 205, 397, 400 |
| Tsp45I | GTSAC | 1 cut(s) | 515 |
| TspDTI | ATGAA | 2 cut(s) | 248, 498 |
| TspRI | CASTG | 1 cut(s) | 506 |
| VspI | ATTAAT | 1 cut(s) | 33 |
| XapI | RAATTY | 2 cut(s) | 235, 355 |
| XceI | RCATGY | 1 cut(s) | 103 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 155, 274, 355 |
| XspI | CTAG | 2 cut(s) | 69, 513 |