Rorug02G0560000

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Reverse (-)
68592428 .. 68597594
5167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0560000.1

Sequence Viewer

Length: 1467 bp
ATGGCTGCACCACCAAACCCTACAAGAATTGGCCTTGCTGGTTTGGCTGTCATGGGCCAAAATTTGGCCCTCAATATTGCAGAGAAAGGCTTCCCCATTTCCGTGTACAATAGAACTACCTCCAAAGTTGATGAGACTGTTGAGCGAGCTAAAAAGGAAGGAAACCTTCCCCTTTACGGCTTCCATGATCCTGAATCTTTTGTTAAGTCAATCCAAAAACCTCGGGTGGTAATCATGCTTGTCAAGGCTGGGGCGCCTGTTGATCAGACCATAAAGACTCTCTCCGTCTACCTGGAGAAGGGTGACTGCATTATTGATGGTGGTAATGAGTGGTATGAGAACACTGAGAGGAGGCAGAAAGCCATGGCTGAATTGGGTCTTCTTTACCTTGGAATGGGAGTTTCAGGTGGCGAAGAGGGGGCTCGATATGGACCCTCTATGATGCCTGGAGGATCCTTTGAGGCCTATAAGTACATTGAAGACATCCTTCTTAAGGTGTCAGCTCAAGTTCCAGACAGTGGCCCCTGTGTGACTTACATTGGCAAAGGTGGGTCTGGTAACTTTGTGAAGATGATTCATAATGGAATTGAATATGGTGACATGCAGCTGATAGCAGAGGCTTATGATGTTCTTAAATCTGTTGGGAAGTTGTCAAATGAGGAACTACAAAATGTTTTTTCAGAATGGAACAAGGGAGAGCTGCTGAGCTTCTTGATTGAAATCACTGCAGATATTTTTGGAATCAAGGACGACAAGGGAGATGGATATTTGGTGGACAAGGTTTTGGACAAGACCGGCATGAAGGGTACTGGTAAATGGACTGTACAGCAAGCTGCTGAACTATCCATTGCCGCTCCCACAATTGAATCTTCTTTGGATGCAAGGTTCCTCAGTGGGTTAAAGGATGAGAGGGTTGAAGCTGCTAAAGTGTTCAAAGCAGGTGGCTTTGGTGATATCTTGACTGACCAAGAGGTGGATAAGGCAAAGTTGGTCGATGATGTGAGGCAAGCTCTCTATTCATCCAAGATATGCAGTTATGCACAGGGCATGAATTTGATCCGTGCAAAGAGTATTGAGCAGGGATGGGACTTGAAGTTGGGCGAATTGGCTAGGATTTGGAAGGGAGGTTGCATCATTCGAGCTGTGTTCTTGGACAGAATTAAGCAGGCTTACGATAGGAACAGTGATCTTGCAAACCTTCTTGTGGACCCTGAGTTTTCGAAGGAGATCATTGAGCGACAGTCTGCGTGGCGAAGGGTGGTATGCCTTGCTATCAACTCAGGCATCAGTACCCCAGGTATGTCAGCTAGTCTTGCTTATTTTGACACCTACAGAAGGTCGAGACTGCCAGCTAACTTGGTCCAAGCTCAACGCGACTACTTTGGTGCTCATACATATGAAAGAACTGATGTTGAAGGTGCTTTCCACACTGAATGGTTCAAGATTGCTAAGCAATCCAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

488

Amino Acids

53.8

Weight (kDa)

5.85

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_2 PF03446 9 - 181 1.5e-45 NAD binding domain of 6-phosphogluconate dehydrogenase
6PGD PF00393 186 - 479 7.1e-127 6-phosphogluconate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 929
Acc36I ACCTGC 1 cut(s) 929
AccB1I GGYRCC 1 cut(s) 253
AccB7I CCANNNNNTGG 3 cut(s) 64, 518, 973
AccBSI CCGCTC 1 cut(s) 854
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 1374
AciI CCGC 1 cut(s) 852
AclWI GGATC 4 cut(s) 182, 447, 460, 1051
AcsI RAATTY 2 cut(s) 61, 1051
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 5 cut(s) 107, 473, 808, 825, 1291
AfiI CCNNNNNNNGG 9 cut(s) 64, 176, 298, 394, 493, 518, 973, 1204, 1335
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 9 cut(s) 479, 590, 719, 866, 917, 934, 1093, 1415, 1441
AjnI CCWGG 3 cut(s) 291, 445, 1294
AloI GAACNNNNNNTCC 2 cut(s) 869, 901
Alw21I GWGCWC 1 cut(s) 1390
Alw26I GTCTC 2 cut(s) 128, 1336
AlwI GGATC 4 cut(s) 182, 447, 460, 1051
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 5 cut(s) 31, 55, 66, 462, 520
ApeKI GCWGC 5 cut(s) 5, 604, 700, 833, 920
ApoI RAATTY 2 cut(s) 61, 1051
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 6 cut(s) 55, 67, 431, 521, 1207, 1360
AsuHPI GGTGA 3 cut(s) 314, 608, 962
AsuII TTCGAA 1 cut(s) 1220
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 3 cut(s) 431, 1207, 1360
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 424
BbsI GAAGAC 2 cut(s) 371, 486
Bbv12I GWGCWC 1 cut(s) 1390
BbvI GCAGC 4 cut(s) 616, 687, 820, 907
BccI CCATC 3 cut(s) 311, 755, 1077
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 3 cut(s) 293, 447, 1296
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 128, 1336
BfaI CTAG 2 cut(s) 1110, 1308
BfmI CTRYAG 2 cut(s) 726, 1330
BfoI RGCGCY 1 cut(s) 257
BfrI CTTAAG 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 929
BisI GCNGC 6 cut(s) 6, 605, 701, 834, 852, 921
BlpI GCTNAGC 2 cut(s) 704, 1449
BlsI GCNGC 6 cut(s) 7, 606, 702, 835, 853, 922
Bme1390I CCNGG 3 cut(s) 293, 447, 1296
Bme18I GGWCC 3 cut(s) 431, 1207, 1360
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 6 cut(s) 55, 67, 431, 521, 1207, 1360
BmiI GGNNCC 6 cut(s) 255, 433, 454, 523, 887, 1209
BmrFI CCNGG 3 cut(s) 293, 447, 1296
BmsI GCATC 4 cut(s) 432, 868, 1140, 1293
BpiI GAAGAC 2 cut(s) 371, 486
BplI GAGNNNNNCTC 2 cut(s) 994, 1026
BpmI CTGGAG 2 cut(s) 314, 468
Bpu1102I GCTNAGC 2 cut(s) 704, 1449
Bpu14I TTCGAA 1 cut(s) 1220
BpuEI CTTGAG 1 cut(s) 489
BsaBI GATNNNNATC 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 4 cut(s) 221, 363, 388, 1294
Bsc4I CCNNNNNNNGG 9 cut(s) 64, 176, 298, 394, 493, 518, 973, 1204, 1335
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 1 cut(s) 814
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 719
BseBI CCWGG 3 cut(s) 293, 447, 1296
BseDI CCNNGG 4 cut(s) 221, 363, 388, 1294
BseGI GGATG 5 cut(s) 483, 883, 910, 1019, 1088
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 9 cut(s) 64, 176, 298, 394, 493, 518, 973, 1204, 1335
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 5 cut(s) 336, 695, 904, 1203, 1293
BseNI ACTGG 1 cut(s) 814
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 4 cut(s) 616, 687, 820, 907
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 1374
BshFI GGCC 5 cut(s) 33, 57, 68, 464, 522
BshNI GGYRCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 1390
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 795
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 9 cut(s) 64, 176, 298, 394, 493, 518, 973, 1204, 1335
BsmAI GTCTC 2 cut(s) 128, 1336
BsmFI GGGAC 1 cut(s) 1100
BsnI GGCC 5 cut(s) 33, 57, 68, 464, 522
BsoBI CYCGRG 1 cut(s) 222
Bsp119I TTCGAA 1 cut(s) 1220
Bsp1286I GDGCHC 2 cut(s) 424, 1390
Bsp1407I TGTACA 2 cut(s) 105, 823
Bsp143I GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
Bsp1720I GCTNAGC 2 cut(s) 704, 1449
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 1 cut(s) 852
BspANI GGCC 5 cut(s) 33, 57, 68, 464, 522
BspCNI CTCAG 5 cut(s) 337, 696, 903, 1204, 1292
BspFNI CGCG 1 cut(s) 1374
BspLI GGNNCC 6 cut(s) 255, 433, 454, 523, 887, 1209
BspMAI CTGCAG 1 cut(s) 730
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 4 cut(s) 182, 447, 460, 1051
BspT104I TTCGAA 1 cut(s) 1220
BspT107I GGYRCC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 854
BsrDI GCAATG 1 cut(s) 846
BsrFI RCCGGY 1 cut(s) 794
BsrGI TGTACA 2 cut(s) 105, 823
BsrI ACTGG 1 cut(s) 814
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 4 cut(s) 221, 363, 388, 1294
BssMI GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 363, 388
Bst2UI CCWGG 3 cut(s) 293, 447, 1296
Bst4CI ACNGT 5 cut(s) 139, 518, 823, 1184, 1242
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 1 cut(s) 254
BstAFI CTTAAG 1 cut(s) 491
BstAUI TGTACA 2 cut(s) 105, 823
BstBI TTCGAA 1 cut(s) 1220
BstC8I GCNNGC 5 cut(s) 147, 831, 1008, 1167, 1350
BstDEI CTNAG 6 cut(s) 345, 704, 890, 1212, 1279, 1449
BstDSI CCRYGG 1 cut(s) 363
BstENI CCTNNNNNAGG 3 cut(s) 296, 491, 1333
BstF5I GGATG 5 cut(s) 483, 883, 910, 1019, 1088
BstFNI CGCG 1 cut(s) 1374
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 6 cut(s) 190, 265, 455, 1059, 1189, 1230
BstMAI GTCTC 2 cut(s) 128, 1336
BstMBI GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
BstMWI GCNNNNNNNGC 2 cut(s) 44, 1313
BstNI CCWGG 3 cut(s) 293, 447, 1296
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 291, 445, 1294
BstSFI CTRYAG 2 cut(s) 726, 1330
BstUI CGCG 1 cut(s) 1374
BstV1I GCAGC 4 cut(s) 616, 687, 820, 907
BstV2I GAAGAC 2 cut(s) 371, 486
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 5 cut(s) 33, 57, 68, 464, 522
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 5 cut(s) 483, 883, 910, 1019, 1088
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 6 cut(s) 342, 523, 723, 898, 1189, 1428
BveI ACCTGC 1 cut(s) 929
Cac8I GCNNGC 5 cut(s) 147, 831, 1008, 1167, 1350
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 6 cut(s) 55, 67, 431, 521, 1207, 1360
Csp6I GTAC 5 cut(s) 106, 472, 807, 824, 1290
CspCI CAANNNNNGTGG 2 cut(s) 922, 957
CviAII CATG 7 cut(s) 52, 185, 235, 364, 601, 799, 1048
CviQI GTAC 5 cut(s) 106, 472, 807, 824, 1290
DdeI CTNAG 6 cut(s) 345, 704, 890, 1212, 1279, 1449
DinI GGCGCC 1 cut(s) 255
DpnI GATC 6 cut(s) 189, 264, 454, 1058, 1188, 1229
DpnII GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 363, 388
Eco147I AGGCCT 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 3 cut(s) 431, 1207, 1360
Eco88I CYCGRG 1 cut(s) 222
EcoNI CCTNNNNNAGG 3 cut(s) 296, 491, 1333
EcoRII CCWGG 3 cut(s) 291, 445, 1294
EcoRV GATATC 1 cut(s) 955
EcoT14I CCWWGG 2 cut(s) 363, 388
EcoT38I GRGCYC 1 cut(s) 424
EgeI GGCGCC 1 cut(s) 255
EheI GGCGCC 1 cut(s) 255
ErhI CCWWGG 2 cut(s) 363, 388
FaeI CATG 7 cut(s) 55, 188, 238, 367, 604, 802, 1051
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 471, 503
FaqI GGGAC 1 cut(s) 1100
FatI CATG 7 cut(s) 51, 184, 234, 363, 600, 798, 1047
FauNDI CATATG 1 cut(s) 1396
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 6 cut(s) 6, 605, 701, 834, 852, 921
FokI GGATG 5 cut(s) 470, 890, 917, 1006, 1095
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 6 cut(s) 6, 605, 701, 834, 852, 921
FspBI CTAG 2 cut(s) 1110, 1308
GlaI GCGC 1 cut(s) 255
GluI GCNGC 6 cut(s) 6, 605, 701, 834, 852, 921
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 314, 468
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 5 cut(s) 33, 57, 68, 464, 522
HapII CCGG 1 cut(s) 795
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 7 cut(s) 55, 188, 238, 367, 604, 802, 1051
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 5 cut(s) 194, 277, 574, 741, 866
HpaII CCGG 1 cut(s) 795
HphI GGTGA 3 cut(s) 314, 608, 962
Hpy166II GTNNAC 4 cut(s) 106, 289, 775, 1207
Hpy188I TCNGA 2 cut(s) 267, 682
Hpy188III TCNNGA 6 cut(s) 191, 512, 712, 958, 1341, 1441
Hpy8I GTNNAC 4 cut(s) 106, 289, 775, 1207
HpyCH4III ACNGT 5 cut(s) 139, 518, 823, 1184, 1242
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 1313
HpyF3I CTNAG 6 cut(s) 345, 704, 890, 1212, 1279, 1449
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 7 cut(s) 55, 188, 238, 367, 604, 802, 1051
HspAI GCGC 1 cut(s) 254
KasI GGCGCC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 4 cut(s) 616, 687, 820, 907
LweI GCATC 4 cut(s) 432, 868, 1140, 1293
MaeI CTAG 2 cut(s) 1110, 1308
MaeIII GTNAC 4 cut(s) 302, 529, 557, 596
MalI GATC 6 cut(s) 189, 264, 454, 1058, 1188, 1229
MbiI CCGCTC 1 cut(s) 854
MboI GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
MboII GAAGA 5 cut(s) 371, 425, 491, 580, 861
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 424, 1390
MluCI AATT 8 cut(s) 27, 61, 371, 585, 861, 1051, 1103, 1158
Mly113I GGCGCC 1 cut(s) 254
MlyI GAGTC 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 6 cut(s) 204, 492, 633, 899, 1161, 1465
MslI CAYNNNNRTG 2 cut(s) 101, 1395
MspA1I CMGCKG 1 cut(s) 607
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 1 cut(s) 795
MspR9I CCNGG 3 cut(s) 293, 447, 1296
MunI CAATTG 1 cut(s) 861
MvaI CCWGG 3 cut(s) 293, 447, 1296
MvnI CGCG 1 cut(s) 1374
MwoI GCNNNNNNNGC 2 cut(s) 44, 1313
NarI GGCGCC 1 cut(s) 254
NcoI CCATGG 1 cut(s) 363
NdeI CATATG 1 cut(s) 1396
NdeII GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
NlaIII CATG 7 cut(s) 55, 188, 238, 367, 604, 802, 1051
NlaIV GGNNCC 6 cut(s) 255, 433, 454, 523, 887, 1209
NmuCI GTSAC 3 cut(s) 302, 529, 596
NspI RCATGY 1 cut(s) 604
NspV TTCGAA 1 cut(s) 1220
PaqCI CACCTGC 1 cut(s) 929
PceI AGGCCT 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 194, 574, 741, 866
PflMI CCANNNNNTGG 3 cut(s) 64, 518, 973
PkrI GCNGC 6 cut(s) 7, 606, 702, 835, 853, 922
PleI GAGTC 1 cut(s) 271
PluTI GGCGCC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 291, 445, 1294
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 3 cut(s) 291, 445, 1294
PspN4I GGNNCC 6 cut(s) 255, 433, 454, 523, 887, 1209
PspPI GGNCC 6 cut(s) 55, 67, 431, 521, 1207, 1360
PstI CTGCAG 1 cut(s) 730
PsuI RGATCY 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 607
RsaI GTAC 5 cut(s) 107, 473, 808, 825, 1291
RsaNI GTAC 5 cut(s) 106, 472, 807, 824, 1290
RseI CAYNNNNRTG 2 cut(s) 101, 1395
SaqAI TTAA 6 cut(s) 204, 492, 633, 899, 1161, 1465
SatI GCNGC 6 cut(s) 6, 605, 701, 834, 852, 921
Sau3AI GATC 6 cut(s) 187, 262, 452, 1056, 1186, 1227
Sau96I GGNCC 6 cut(s) 55, 67, 431, 521, 1207, 1360
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 293, 447, 1296
SduI GDGCHC 2 cut(s) 424, 1390
SfaNI GCATC 4 cut(s) 432, 868, 1140, 1293
SfcI CTRYAG 2 cut(s) 726, 1330
SfoI GGCGCC 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 1220
SinI GGWCC 3 cut(s) 431, 1207, 1360
SmiMI CAYNNNNRTG 2 cut(s) 101, 1395
SmlI CTYRAG 2 cut(s) 491, 504
SmoI CTYRAG 2 cut(s) 491, 504
Sse9I AATT 8 cut(s) 27, 61, 371, 585, 861, 1051, 1103, 1158
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 1 cut(s) 852
SspDI GGCGCC 1 cut(s) 253
SspI AATATT 1 cut(s) 76
SspMI CTAG 2 cut(s) 1110, 1308
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 3 cut(s) 291, 445, 1294
StyI CCWWGG 2 cut(s) 363, 388
TaaI ACNGT 5 cut(s) 139, 518, 823, 1184, 1242
TaqI TCGA 5 cut(s) 424, 993, 1138, 1220, 1340
TasI AATT 8 cut(s) 27, 61, 371, 585, 861, 1051, 1103, 1158
TatI WGTACW 3 cut(s) 105, 471, 823
TauI GCSGC 1 cut(s) 854
TfiI GAWTC 4 cut(s) 194, 574, 741, 866
Tru1I TTAA 6 cut(s) 204, 492, 633, 899, 1161, 1465
Tru9I TTAA 6 cut(s) 204, 492, 633, 899, 1161, 1465
TscAI CASTG 6 cut(s) 349, 523, 730, 898, 1189, 1435
TseFI GTSAC 3 cut(s) 302, 529, 596
TseI GCWGC 5 cut(s) 5, 604, 700, 833, 920
Tsp45I GTSAC 3 cut(s) 302, 529, 596
TspDTI ATGAA 5 cut(s) 566, 815, 1008, 1064, 1413
TspGWI ACGGA 3 cut(s) 91, 274, 1049
TspRI CASTG 6 cut(s) 349, 523, 730, 898, 1189, 1435
Van91I CCANNNNNTGG 3 cut(s) 64, 518, 973
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 3 cut(s) 431, 1207, 1360
XagI CCTNNNNNAGG 3 cut(s) 296, 491, 1333
XapI RAATTY 2 cut(s) 61, 1051
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 2 cut(s) 1110, 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.