Rh3AG251300

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000056
Physical Location & Seq
Forward (+)
27079469 .. 27080164
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG251300.1

Sequence Viewer

Length: 696 bp
ATGCCTGTGGTGGAGCCTTACACGGGAATCCATGTGCGGCACTCGGCGGCAGTTTATGCCCCGCGGCCGGTCGGGAGGGAGAGGGAAGAAGAGTTTGCGATCTCAGTCAAGTTCTACAAGCCATGCTATATCCGACGTTCGCTGTCCGATCCACCCCATATTGAACGGAGCCTCATAACACATGTGGTTGTGTTGCTCCCTTTCTCCATGGTCAAGCAAAAACGTCATGAGTCATTTTATAGAGGGATGATGAAGCAGTATCTTTCGGATATAGGTGTCTCTGAAACTCTACATACAGAGATTCTCGATAAGTTGTTCCAGGTGATTGAAGCTGCCGAGACCTACGAGGTGCCTATTCTTTTGATCATATTCGAGAGTACTGACCGGAGGGATAGTGATGAGATCTTGAGTTTCACTCCTACAGCTGAATCTGCAATCGAGGGTTTGGAGAAAGTGAGACTTGATGCTGCCATTATTGGACAATCACCGATGTGTGCTATATGTTGGAAGGATTTTGCACCCGAAGATGTTGGTCAGCTGATGGTTACTCGCATGCCCTGCTCTCACTGTTATCATGGAGATTGCATTGTCCGCTGGCTGAGCGTTAATCATCTATGTCCCATGTGCCGATACCCGATGCCAGTGGAGACCCAGCCATTATTATCATCGAATCCCCTGAGTCCTCCTCCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

231

Amino Acids

26.33

Weight (kDa)

5.85

Isoelectric Point (pI)

68.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 159 - 210 4.7e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 164 - 210 3.5e-11 Ring finger domain
zf-RING_11 PF17123 165 - 196 7.6e-08 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccII CGCG 1 cut(s) 64
AciI CCGC 5 cut(s) 37, 47, 62, 64, 592
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 65
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 23, 67
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 164, 329
AjnI CCWGG 1 cut(s) 318
AleI CACNNNNGTG 1 cut(s) 490
AluBI AGCT 3 cut(s) 332, 425, 538
AluI AGCT 3 cut(s) 332, 425, 538
Alw26I GTCTC 4 cut(s) 283, 332, 451, 641
AlwI GGATC 1 cut(s) 143
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 332, 467
AsuHPI GGTGA 2 cut(s) 334, 477
BanI GGYRCC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 319, 454
BccI CCATC 1 cut(s) 535
BciT130I CCWGG 1 cut(s) 320
BclI TGATCA 1 cut(s) 363
BcoDI GTCTC 4 cut(s) 283, 332, 451, 641
BfmI CTRYAG 1 cut(s) 420
BglII AGATCT 1 cut(s) 402
BisI GCNGC 5 cut(s) 38, 48, 65, 333, 468
BlpI GCTNAGC 1 cut(s) 599
BlsI GCNGC 5 cut(s) 39, 49, 66, 334, 469
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 320
BmiI GGNNCC 3 cut(s) 15, 170, 351
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 2 cut(s) 454, 627
BplI GAGNNNNNCTC 3 cut(s) 400, 432, 670
Bpu1102I GCTNAGC 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 427
BsaI GGTCTC 2 cut(s) 332, 641
BsaJI CCNNGG 2 cut(s) 62, 207
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 67
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 62, 207
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 23, 67
BseMII CTCAG 3 cut(s) 117, 590, 668
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 1 cut(s) 675
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 319, 454
BseYI CCCAGC 1 cut(s) 651
Bsh1236I CGCG 1 cut(s) 64
Bsh1285I CGRYCG 2 cut(s) 68, 72
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 349
BsiEI CGRYCG 2 cut(s) 68, 72
BsiSI CCGG 2 cut(s) 68, 385
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 23, 67
BsmAI GTCTC 4 cut(s) 283, 332, 451, 641
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 2 cut(s) 332, 641
Bsp143I GATC 4 cut(s) 99, 148, 363, 402
Bsp1720I GCTNAGC 1 cut(s) 599
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 5 cut(s) 37, 47, 62, 64, 592
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 116, 591, 669
BspFNI CGCG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 15, 170, 351
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 2 cut(s) 332, 641
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 62, 207
BssMI GATC 4 cut(s) 99, 148, 363, 402
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 2 cut(s) 56, 558
BstC8I GCNNGC 2 cut(s) 554, 596
BstDEI CTNAG 3 cut(s) 103, 599, 677
BstDSI CCRYGG 2 cut(s) 62, 207
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 4 cut(s) 102, 151, 366, 405
BstMAI GTCTC 4 cut(s) 283, 332, 451, 641
BstMBI GATC 4 cut(s) 99, 148, 363, 402
BstMCI CGRYCG 2 cut(s) 68, 72
BstMWI GCNNNNNNNGC 5 cut(s) 56, 431, 558, 591, 600
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 185, 556
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 319, 454
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BstZI CGGCCG 1 cut(s) 65
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 2 cut(s) 62, 207
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 565, 648
Cac8I GCNNGC 2 cut(s) 554, 596
CciI TCATGA 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 67
Cfr42I CCGCGG 1 cut(s) 65
Csp6I GTAC 1 cut(s) 378
CviAII CATG 8 cut(s) 32, 123, 182, 208, 227, 553, 575, 622
CviJI RGCY 9 cut(s) 16, 67, 121, 171, 332, 425, 538, 598, 655
CviKI_1 RGCY 9 cut(s) 16, 67, 121, 171, 332, 425, 538, 598, 655
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 3 cut(s) 103, 599, 677
DpnI GATC 4 cut(s) 101, 150, 365, 404
DpnII GATC 4 cut(s) 99, 148, 363, 402
EaeI YGGCCR 1 cut(s) 65
EagI CGGCCG 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EclXI CGGCCG 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 2 cut(s) 332, 641
Eco52I CGGCCG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 8 cut(s) 35, 126, 185, 211, 230, 556, 578, 625
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 603
FatI CATG 8 cut(s) 31, 122, 181, 207, 226, 552, 574, 621
FauI CCCGC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 5 cut(s) 38, 48, 65, 333, 468
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 5 cut(s) 38, 48, 65, 333, 468
GluI GCNGC 5 cut(s) 38, 48, 65, 333, 468
GsaI CCCAGC 1 cut(s) 655
HaeIII GGCC 1 cut(s) 67
HapII CCGG 2 cut(s) 68, 385
Hin1II CATG 8 cut(s) 35, 126, 185, 211, 230, 556, 578, 625
HinfI GANTC 6 cut(s) 27, 230, 301, 428, 670, 679
HpaII CCGG 2 cut(s) 68, 385
HphI GGTGA 2 cut(s) 334, 477
Hpy188I TCNGA 4 cut(s) 134, 148, 268, 283
Hpy188III TCNNGA 5 cut(s) 73, 227, 305, 373, 406
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 2 cut(s) 136, 223
HpyCH4V TGCA 3 cut(s) 434, 518, 585
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 431, 558, 591, 600
HpyF3I CTNAG 3 cut(s) 103, 599, 677
HpySE526I ACGT 2 cut(s) 136, 223
Hsp92II CATG 8 cut(s) 35, 126, 185, 211, 230, 556, 578, 625
Ksp22I TGATCA 1 cut(s) 363
KspI CCGCGG 1 cut(s) 65
Kzo9I GATC 4 cut(s) 99, 148, 363, 402
LmnI GCTCC 3 cut(s) 13, 168, 201
Lsp1109I GCAGC 2 cut(s) 319, 454
LweI GCATC 2 cut(s) 454, 627
MaeII ACGT 2 cut(s) 136, 223
MaeIII GTNAC 1 cut(s) 544
MalI GATC 4 cut(s) 101, 150, 365, 404
MboI GATC 4 cut(s) 99, 148, 363, 402
MboII GAAGA 3 cut(s) 98, 101, 536
MflI RGATCY 1 cut(s) 402
MluCI AATT 1 cut(s) 691
MlyI GAGTC 2 cut(s) 239, 688
MmeI TCCRAC 2 cut(s) 157, 485
MnlI CCTC 9 cut(s) 69, 75, 182, 236, 340, 381, 433, 693, 696
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 1 cut(s) 490
MspA1I CMGCKG 4 cut(s) 64, 425, 538, 594
MspI CCGG 2 cut(s) 68, 385
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 5 cut(s) 56, 431, 558, 591, 600
NcoI CCATGG 1 cut(s) 207
NdeII GATC 4 cut(s) 99, 148, 363, 402
NlaIII CATG 8 cut(s) 35, 126, 185, 211, 230, 556, 578, 625
NlaIV GGNNCC 3 cut(s) 15, 170, 351
NmeAIII GCCGAG 2 cut(s) 23, 361
NspI RCATGY 2 cut(s) 185, 556
OliI CACNNNNGTG 1 cut(s) 490
PaeI GCATGC 1 cut(s) 556
PagI TCATGA 1 cut(s) 226
PciI ACATGT 1 cut(s) 181
PfeI GAWTC 4 cut(s) 27, 301, 428, 670
PkrI GCNGC 5 cut(s) 39, 49, 66, 334, 469
PleI GAGTC 2 cut(s) 238, 687
PpsI GAGTC 2 cut(s) 238, 687
PscI ACATGT 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 651
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 3 cut(s) 15, 170, 351
PsuI RGATCY 1 cut(s) 402
PvuII CAGCTG 2 cut(s) 425, 538
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 490
SacII CCGCGG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 5 cut(s) 38, 48, 65, 333, 468
Sau3AI GATC 4 cut(s) 99, 148, 363, 402
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 2 cut(s) 239, 688
ScrFI CCNGG 1 cut(s) 320
SetI ASST 9 cut(s) 139, 226, 277, 324, 334, 344, 351, 427, 540
SfaNI GCATC 2 cut(s) 454, 627
SfcI CTRYAG 1 cut(s) 420
Sfr303I CCGCGG 1 cut(s) 65
SgrBI CCGCGG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SphI GCATGC 1 cut(s) 556
Sse9I AATT 1 cut(s) 691
SsiI CCGC 5 cut(s) 37, 47, 62, 64, 592
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 2 cut(s) 139, 226
TaqI TCGA 4 cut(s) 306, 372, 438, 668
TasI AATT 1 cut(s) 691
TatI WGTACW 1 cut(s) 377
TauI GCSGC 3 cut(s) 40, 50, 67
TfiI GAWTC 4 cut(s) 27, 301, 428, 670
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 2 cut(s) 572, 648
TseI GCWGC 2 cut(s) 332, 467
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 2 cut(s) 572, 648
XceI RCATGY 2 cut(s) 185, 556
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.