FvH4_6g11580

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000056
Physical Location & Seq
Reverse (-)
6942807 .. 6943514
708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11580.t1

Sequence Viewer

Length: 708 bp
ATGCCTGTGGTGGAGACTTACTCAGAAATCTCTGTGTCTCAGACAACCGAAATTCCAGTGCCGTCGCCGGTCGGCATGAGGAGGGAAGAAGAACTACTAGTCGTTGTAGTCGACTTTTGCCAGCCATGCATTATCCAGCAAACGTCGTCCGATCCAGTCTATTTAGTAACCGGCCCAAAACATCTGTTAAAAATGTACTTCCCTTTCTCCGACGTCAAGCAAACAAGTAACGAGTCAAAGTATAGAGAAGTGATGAAGATCGATCTTGCAGACGAAGATGTCTCTGAAGATCTACAGGAAGAGATGTTTGACAAGTTGTTCCCGGTGATTTACGCCGCTGAGACCTACGAGGTGCCTATTCTCGTGACCATACGTGACATCACTTTTTTCTGGTTGGACGATAGTGATGGTGATGATGAGGAGGACTCGAGTGTCACTCCTGCAGCTGAATCCGCAATCGAGGGTTTGGAGAAAATGAGACTTGATGCTGACATTATTGAACAAACACCAATGTGTGGTATATGTCAGAAGGATTTTGCATTGGAGGAACAAGAAGTGATGCTTACTCGCATGCCTTGCTCACACTGTTATCATGAAGATTGCATTGCCCGCTGGCTGAGCGTTAATCATCGATGTCCCTTGTGCCGATACCCGATGCCGGCGGCCGAGACCCCTCAACGTGAGTTGAATTGCTTCGATTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

236

Amino Acids

26.93

Weight (kDa)

4.24

Isoelectric Point (pI)

64.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 171 - 216 2e-12 Ring finger domain
zf-C3HC4_2 PF13923 171 - 215 4.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 172 - 202 6.1e-07 RING-like zinc finger
zf-rbx1 PF12678 173 - 216 1.9e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 278, 431
AatII GACGTC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 515
AccI GTMKAC 1 cut(s) 111
AciI CCGC 4 cut(s) 336, 453, 610, 662
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 515, 658
AgsI TTSAA 2 cut(s) 500, 688
AhlI ACTAGT 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 511
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
Alw26I GTCTC 6 cut(s) 8, 42, 286, 335, 472, 662
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 427
AoxI GGCC 2 cut(s) 172, 663
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 692
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 337, 422
AvaI CYCGRG 1 cut(s) 427
BanI GGYRCC 1 cut(s) 352
BarI GAAGNNNNNNTAC 2 cut(s) 78, 110
BauI CACGAG 1 cut(s) 362
BbvI GCAGC 1 cut(s) 455
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 6 cut(s) 8, 42, 286, 335, 472, 662
BcuI ACTAGT 1 cut(s) 97
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 2 cut(s) 293, 441
BglII AGATCT 1 cut(s) 289
BisI GCNGC 3 cut(s) 336, 444, 663
BlpI GCTNAGC 1 cut(s) 617
BlsI GCNGC 3 cut(s) 337, 445, 664
Bme1390I CCNGG 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 3 cut(s) 475, 549, 645
BplI GAGNNNNNCTC 5 cut(s) 37, 410, 442, 421, 453
Bpu1102I GCTNAGC 1 cut(s) 617
BpuMI CCSGG 1 cut(s) 323
Bsa29I ATCGAT 2 cut(s) 261, 631
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 2 cut(s) 335, 662
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 658
Bse118I RCCGGY 3 cut(s) 67, 170, 658
Bse1I ACTGG 2 cut(s) 56, 155
Bse3DI GCAATG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 257
BseCI ATCGAT 2 cut(s) 261, 631
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 515, 658
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 4 cut(s) 36, 53, 330, 608
BseNI ACTGG 2 cut(s) 56, 155
BseRI GAGGAG 2 cut(s) 94, 434
BseX3I CGGCCG 1 cut(s) 663
BseXI GCAGC 1 cut(s) 455
Bsh1285I CGRYCG 2 cut(s) 72, 666
BshFI GGCC 2 cut(s) 174, 665
BshNI GGYRCC 1 cut(s) 352
BshVI ATCGAT 2 cut(s) 261, 631
BsiEI CGRYCG 2 cut(s) 72, 666
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 4 cut(s) 68, 171, 323, 659
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 515, 658
BsmAI GTCTC 6 cut(s) 8, 42, 286, 335, 472, 662
BsmFI GGGAC 1 cut(s) 621
BsnI GGCC 2 cut(s) 174, 665
Bso31I GGTCTC 2 cut(s) 335, 662
BsoBI CYCGRG 1 cut(s) 427
Bsp143I GATC 4 cut(s) 151, 258, 262, 289
Bsp1720I GCTNAGC 1 cut(s) 617
BspACI CCGC 4 cut(s) 336, 453, 610, 662
BspANI GGCC 2 cut(s) 174, 665
BspCNI CTCAG 4 cut(s) 35, 52, 331, 609
BspDI ATCGAT 2 cut(s) 261, 631
BspHI TCATGA 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 354
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 352
BspTNI GGTCTC 2 cut(s) 335, 662
BsrDI GCAATG 1 cut(s) 603
BsrFI RCCGGY 3 cut(s) 67, 170, 658
BsrI ACTGG 2 cut(s) 56, 155
BssAI RCCGGY 3 cut(s) 67, 170, 658
BssMI GATC 4 cut(s) 151, 258, 262, 289
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 576
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 122, 572, 610, 614, 660
BstDEI CTNAG 4 cut(s) 22, 39, 339, 617
BstKTI GATC 4 cut(s) 154, 261, 265, 292
BstMAI GTCTC 6 cut(s) 8, 42, 286, 335, 472, 662
BstMBI GATC 4 cut(s) 151, 258, 262, 289
BstMCI CGRYCG 2 cut(s) 72, 666
BstMWI GCNNNNNNNGC 5 cut(s) 126, 452, 576, 609, 618
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 2 cut(s) 293, 441
BstV1I GCAGC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BstZI CGGCCG 1 cut(s) 663
Bsu15I ATCGAT 2 cut(s) 261, 631
BsuRI GGCC 2 cut(s) 174, 665
BsuTUI ATCGAT 2 cut(s) 261, 631
BtsIMutI CAGTG 2 cut(s) 63, 583
Cac8I GCNNGC 5 cut(s) 122, 572, 610, 614, 660
CciI TCATGA 1 cut(s) 592
Cfr10I RCCGGY 3 cut(s) 67, 170, 658
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 2 cut(s) 261, 631
Csp6I GTAC 1 cut(s) 196
CviAII CATG 4 cut(s) 76, 126, 571, 593
CviJI RGCY 5 cut(s) 124, 174, 446, 616, 665
CviKI_1 RGCY 5 cut(s) 124, 174, 446, 616, 665
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 22, 39, 339, 617
DpnI GATC 4 cut(s) 153, 260, 264, 291
DpnII GATC 4 cut(s) 151, 258, 262, 289
DrdI GACNNNNNNGTC 2 cut(s) 278, 431
DseDI GACNNNNNNGTC 2 cut(s) 278, 431
EaeI YGGCCR 1 cut(s) 663
EagI CGGCCG 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
EclXI CGGCCG 1 cut(s) 663
Eco31I GGTCTC 2 cut(s) 335, 662
Eco52I CGGCCG 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 427
EcoT22I ATGCAT 1 cut(s) 131
FaeI CATG 4 cut(s) 79, 129, 574, 596
FaiI YATR 8 cut(s) 77, 127, 243, 371, 521, 523, 572, 594
FalI AAGNNNNNCTT 2 cut(s) 546, 578
FaqI GGGAC 1 cut(s) 621
FatI CATG 4 cut(s) 75, 125, 570, 592
FauI CCCGC 1 cut(s) 617
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 336, 444, 663
Fsp4HI GCNGC 3 cut(s) 336, 444, 663
FspBI CTAG 1 cut(s) 98
GluI GCNGC 3 cut(s) 336, 444, 663
HaeIII GGCC 2 cut(s) 174, 665
HapII CCGG 4 cut(s) 68, 171, 323, 659
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 4 cut(s) 79, 129, 574, 596
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 3 cut(s) 233, 425, 449
HpaII CCGG 4 cut(s) 68, 171, 323, 659
HphI GGTGA 2 cut(s) 337, 422
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 6 cut(s) 25, 42, 151, 211, 286, 528
Hpy188III TCNNGA 2 cut(s) 364, 593
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 3 cut(s) 67, 148, 215
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 4 cut(s) 143, 213, 373, 679
HpyCH4V TGCA 5 cut(s) 129, 269, 443, 539, 603
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 452, 576, 609, 618
HpyF3I CTNAG 4 cut(s) 22, 39, 339, 617
HpySE526I ACGT 4 cut(s) 143, 213, 373, 679
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 4 cut(s) 79, 129, 574, 596
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Kzo9I GATC 4 cut(s) 151, 258, 262, 289
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 3 cut(s) 475, 549, 645
MaeI CTAG 1 cut(s) 98
MaeII ACGT 4 cut(s) 143, 213, 373, 679
MaeIII GTNAC 5 cut(s) 166, 227, 364, 374, 433
MalI GATC 4 cut(s) 153, 260, 264, 291
MboI GATC 4 cut(s) 151, 258, 262, 289
MboII GAAGA 7 cut(s) 98, 101, 268, 287, 299, 311, 608
MflI RGATCY 1 cut(s) 289
MluCI AATT 2 cut(s) 51, 688
MlyI GAGTC 2 cut(s) 242, 419
MmeI TCCRAC 2 cut(s) 234, 375
MnlI CCTC 8 cut(s) 72, 75, 343, 412, 415, 454, 538, 684
Mph1103I ATGCAT 1 cut(s) 131
MroNI GCCGGC 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 692
MseI TTAA 2 cut(s) 188, 624
MslI CAYNNNNRTG 1 cut(s) 511
MspA1I CMGCKG 3 cut(s) 338, 446, 612
MspI CCGG 4 cut(s) 68, 171, 323, 659
MspR9I CCNGG 1 cut(s) 323
MwoI GCNNNNNNNGC 5 cut(s) 126, 452, 576, 609, 618
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 1 cut(s) 323
NdeII GATC 4 cut(s) 151, 258, 262, 289
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 4 cut(s) 79, 129, 574, 596
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 3 cut(s) 364, 374, 433
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 1 cut(s) 574
OliI CACNNNNGTG 1 cut(s) 511
PaeI GCATGC 1 cut(s) 574
PaeR7I CTCGAG 1 cut(s) 427
PagI TCATGA 1 cut(s) 592
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 692
PfeI GAWTC 1 cut(s) 449
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 3 cut(s) 337, 445, 664
PleI GAGTC 2 cut(s) 241, 419
PpsI GAGTC 2 cut(s) 241, 419
Ppu21I YACGTR 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 427
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 511
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 188, 624
SatI GCNGC 3 cut(s) 336, 444, 663
Sau3AI GATC 4 cut(s) 151, 258, 262, 289
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 242, 419
ScrFI CCNGG 1 cut(s) 323
SetI ASST 7 cut(s) 146, 216, 347, 354, 376, 448, 682
SfaNI GCATC 3 cut(s) 475, 549, 645
SfcI CTRYAG 2 cut(s) 293, 441
Sfr274I CTCGAG 1 cut(s) 427
SlaI CTCGAG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 511
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
SpeI ACTAGT 1 cut(s) 97
SphI GCATGC 1 cut(s) 574
Sse9I AATT 2 cut(s) 51, 688
SsiI CCGC 4 cut(s) 336, 453, 610, 662
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 4 cut(s) 146, 216, 376, 682
TaqI TCGA 6 cut(s) 111, 261, 428, 459, 631, 696
TasI AATT 2 cut(s) 51, 688
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 338, 665
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 2 cut(s) 188, 624
Tru9I TTAA 2 cut(s) 188, 624
TscAI CASTG 2 cut(s) 63, 590
TseFI GTSAC 3 cut(s) 364, 374, 433
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 3 cut(s) 364, 374, 433
TspDTI ATGAA 2 cut(s) 269, 609
TspRI CASTG 2 cut(s) 63, 590
Van91I CCANNNNNTGG 1 cut(s) 515
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 574
XhoI CTCGAG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 692
XspI CTAG 1 cut(s) 98
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.