protein modification by small protein conjugation or removal
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-rbx1 | PF12678 | 118 - 175 | 1.1e-09 | RING-H2 zinc finger domain |
| zf-C3HC4 | PF00097 | 119 - 174 | 4.3e-07 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 119 - 164 | 7.7e-06 | RING-type zinc-finger |
| zf-RING_2 | PF13639 | 147 - 175 | 9.6e-10 | Ring finger domain |
| zf-C3HC4_2 | PF13923 | 148 - 174 | 3.6e-06 | Zinc finger, C3HC4 type (RING finger) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AccBSI | CCGCTC | 1 cut(s) | 7 |
| AciI | CCGC | 2 cut(s) | 7, 606 |
| AclWI | GGATC | 4 cut(s) | 39, 374, 404, 410 |
| AcoI | YGGCCR | 1 cut(s) | 577 |
| AcsI | RAATTY | 1 cut(s) | 563 |
| AfaI | GTAC | 1 cut(s) | 633 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 234, 382 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 251 |
| AgsI | TTSAA | 3 cut(s) | 80, 208, 487 |
| AjiI | CACGTC | 1 cut(s) | 254 |
| AluBI | AGCT | 5 cut(s) | 71, 176, 243, 335, 433 |
| AluI | AGCT | 5 cut(s) | 71, 176, 243, 335, 433 |
| AlwI | GGATC | 4 cut(s) | 39, 374, 404, 410 |
| AoxI | GGCC | 1 cut(s) | 577 |
| ApeKI | GCWGC | 3 cut(s) | 64, 335, 592 |
| ApoI | RAATTY | 1 cut(s) | 563 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 93, 125 |
| AsuC2I | CCSGG | 1 cut(s) | 113 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| BbsI | GAAGAC | 1 cut(s) | 440 |
| BbvI | GCAGC | 3 cut(s) | 76, 322, 579 |
| BccI | CCATC | 2 cut(s) | 524, 526 |
| BceAI | ACGGC | 1 cut(s) | 592 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 112, 146 |
| BclI | TGATCA | 2 cut(s) | 189, 424 |
| BcnI | CCSGG | 1 cut(s) | 113 |
| BfaI | CTAG | 1 cut(s) | 494 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BisI | GCNGC | 3 cut(s) | 65, 336, 593 |
| BlsI | GCNGC | 3 cut(s) | 66, 337, 594 |
| BmcAI | AGTACT | 1 cut(s) | 633 |
| Bme1390I | CCNGG | 1 cut(s) | 113 |
| BmgBI | CACGTC | 1 cut(s) | 254 |
| BmiI | GGNNCC | 1 cut(s) | 558 |
| BmrFI | CCNGG | 1 cut(s) | 113 |
| BpiI | GAAGAC | 1 cut(s) | 440 |
| BpuMI | CCSGG | 1 cut(s) | 113 |
| BsaBI | GATNNNNATC | 1 cut(s) | 414 |
| BsaWI | WCCGGW | 1 cut(s) | 382 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 234, 382 |
| Bse1I | ACTGG | 1 cut(s) | 494 |
| Bse8I | GATNNNNATC | 1 cut(s) | 414 |
| BseGI | GGATG | 2 cut(s) | 148, 376 |
| BseJI | GATNNNNATC | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 234, 382 |
| BseMII | CTCAG | 2 cut(s) | 531, 582 |
| BseNI | ACTGG | 1 cut(s) | 494 |
| BseXI | GCAGC | 3 cut(s) | 76, 322, 579 |
| BsgI | GTGCAG | 1 cut(s) | 173 |
| BshFI | GGCC | 1 cut(s) | 579 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BsiSI | CCGG | 2 cut(s) | 113, 383 |
| BslFI | GGGAC | 3 cut(s) | 35, 95, 498 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 234, 382 |
| BsmFI | GGGAC | 3 cut(s) | 35, 95, 498 |
| BsnI | GGCC | 1 cut(s) | 579 |
| Bsp143I | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| BspACI | CCGC | 2 cut(s) | 7, 606 |
| BspANI | GGCC | 1 cut(s) | 579 |
| BspCNI | CTCAG | 2 cut(s) | 532, 581 |
| BspLI | GGNNCC | 1 cut(s) | 558 |
| BspPI | GGATC | 4 cut(s) | 39, 374, 404, 410 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrBI | CCGCTC | 1 cut(s) | 7 |
| BsrI | ACTGG | 1 cut(s) | 494 |
| BssMI | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| Bst4CI | ACNGT | 5 cut(s) | 151, 187, 326, 625, 631 |
| Bst6I | CTCTTC | 1 cut(s) | 21 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 2 cut(s) | 69, 261 |
| BstDEI | CTNAG | 3 cut(s) | 540, 568, 635 |
| BstF5I | GGATG | 2 cut(s) | 148, 376 |
| BstKTI | GATC | 7 cut(s) | 21, 34, 192, 382, 412, 418, 427 |
| BstMBI | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 592 |
| BstNSI | RCATGY | 1 cut(s) | 263 |
| BstSCI | CCNGG | 1 cut(s) | 111 |
| BstV1I | GCAGC | 3 cut(s) | 76, 322, 579 |
| BstV2I | GAAGAC | 1 cut(s) | 440 |
| BstX2I | RGATCY | 1 cut(s) | 31 |
| BstYI | RGATCY | 1 cut(s) | 31 |
| BsuRI | GGCC | 1 cut(s) | 579 |
| BtrI | CACGTC | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 148, 376 |
| BtsIMutI | CAGTG | 2 cut(s) | 135, 576 |
| Cac8I | GCNNGC | 2 cut(s) | 69, 261 |
| Csp6I | GTAC | 1 cut(s) | 632 |
| CviAII | CATG | 2 cut(s) | 163, 260 |
| CviQI | GTAC | 1 cut(s) | 632 |
| DdeI | CTNAG | 3 cut(s) | 540, 568, 635 |
| DpnI | GATC | 7 cut(s) | 20, 33, 191, 381, 411, 417, 426 |
| DpnII | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| EaeI | YGGCCR | 1 cut(s) | 577 |
| Eam1104I | CTCTTC | 1 cut(s) | 21 |
| EarI | CTCTTC | 1 cut(s) | 21 |
| Eco32I | GATATC | 1 cut(s) | 217 |
| EcoRI | GAATTC | 1 cut(s) | 563 |
| EcoRV | GATATC | 1 cut(s) | 217 |
| FaeI | CATG | 2 cut(s) | 166, 263 |
| FaiI | YATR | 8 cut(s) | 137, 164, 194, 261, 296, 350, 590, 659 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 18, 50, 303, 335 |
| FaqI | GGGAC | 3 cut(s) | 35, 95, 498 |
| FatI | CATG | 2 cut(s) | 162, 259 |
| FbaI | TGATCA | 2 cut(s) | 189, 424 |
| Fnu4HI | GCNGC | 3 cut(s) | 65, 336, 593 |
| FokI | GGATG | 2 cut(s) | 155, 383 |
| Fsp4HI | GCNGC | 3 cut(s) | 65, 336, 593 |
| FspBI | CTAG | 1 cut(s) | 494 |
| GluI | GCNGC | 3 cut(s) | 65, 336, 593 |
| HaeIII | GGCC | 1 cut(s) | 579 |
| HapII | CCGG | 2 cut(s) | 113, 383 |
| Hin1II | CATG | 2 cut(s) | 166, 263 |
| HindIII | AAGCTT | 1 cut(s) | 241 |
| HinfI | GANTC | 1 cut(s) | 224 |
| HpaII | CCGG | 2 cut(s) | 113, 383 |
| Hpy166II | GTNNAC | 1 cut(s) | 574 |
| Hpy188I | TCNGA | 1 cut(s) | 229 |
| Hpy188III | TCNNGA | 2 cut(s) | 413, 419 |
| Hpy8I | GTNNAC | 1 cut(s) | 574 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4III | ACNGT | 5 cut(s) | 151, 187, 326, 625, 631 |
| HpyCH4IV | ACGT | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 4 cut(s) | 154, 259, 281, 480 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 592 |
| HpyF3I | CTNAG | 3 cut(s) | 540, 568, 635 |
| HpySE526I | ACGT | 1 cut(s) | 253 |
| Hsp92II | CATG | 2 cut(s) | 166, 263 |
| Ksp22I | TGATCA | 2 cut(s) | 189, 424 |
| Kzo9I | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| LmnI | GCTCC | 3 cut(s) | 4, 181, 461 |
| Lsp1109I | GCAGC | 3 cut(s) | 76, 322, 579 |
| MaeI | CTAG | 1 cut(s) | 494 |
| MaeII | ACGT | 1 cut(s) | 253 |
| MaeIII | GTNAC | 2 cut(s) | 145, 625 |
| MalI | GATC | 7 cut(s) | 20, 33, 191, 381, 411, 417, 426 |
| MbiI | CCGCTC | 1 cut(s) | 7 |
| MboI | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| MboII | GAAGA | 4 cut(s) | 38, 68, 410, 440 |
| MflI | RGATCY | 1 cut(s) | 31 |
| MluCI | AATT | 4 cut(s) | 83, 287, 475, 563 |
| MnlI | CCTC | 3 cut(s) | 22, 292, 547 |
| MseI | TTAA | 2 cut(s) | 90, 664 |
| MspA1I | CMGCKG | 1 cut(s) | 433 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 2 cut(s) | 113, 383 |
| MspR9I | CCNGG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 592 |
| NciI | CCSGG | 1 cut(s) | 113 |
| NdeII | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| NlaIII | CATG | 2 cut(s) | 166, 263 |
| NlaIV | GGNNCC | 1 cut(s) | 558 |
| NspI | RCATGY | 1 cut(s) | 263 |
| PaeI | GCATGC | 1 cut(s) | 263 |
| PfeI | GAWTC | 1 cut(s) | 224 |
| PkrI | GCNGC | 3 cut(s) | 66, 337, 594 |
| PspN4I | GGNNCC | 1 cut(s) | 558 |
| PsuI | RGATCY | 1 cut(s) | 31 |
| PvuII | CAGCTG | 1 cut(s) | 433 |
| RsaI | GTAC | 1 cut(s) | 633 |
| RsaNI | GTAC | 1 cut(s) | 632 |
| SaqAI | TTAA | 2 cut(s) | 90, 664 |
| SatI | GCNGC | 3 cut(s) | 65, 336, 593 |
| Sau3AI | GATC | 7 cut(s) | 18, 31, 189, 379, 409, 415, 424 |
| ScaI | AGTACT | 1 cut(s) | 633 |
| ScrFI | CCNGG | 1 cut(s) | 113 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| SphI | GCATGC | 1 cut(s) | 263 |
| Sse9I | AATT | 4 cut(s) | 83, 287, 475, 563 |
| SsiI | CCGC | 2 cut(s) | 7, 606 |
| SspMI | CTAG | 1 cut(s) | 494 |
| StyD4I | CCNGG | 1 cut(s) | 111 |
| TaaI | ACNGT | 5 cut(s) | 151, 187, 326, 625, 631 |
| TaiI | ACGT | 1 cut(s) | 256 |
| TaqI | TCGA | 1 cut(s) | 99 |
| TasI | AATT | 4 cut(s) | 83, 287, 475, 563 |
| TatI | WGTACW | 1 cut(s) | 631 |
| TfiI | GAWTC | 1 cut(s) | 224 |
| Tru1I | TTAA | 2 cut(s) | 90, 664 |
| Tru9I | TTAA | 2 cut(s) | 90, 664 |
| TscAI | CASTG | 2 cut(s) | 135, 576 |
| TseI | GCWGC | 3 cut(s) | 64, 335, 592 |
| TspGWI | ACGGA | 1 cut(s) | 28 |
| TspRI | CASTG | 2 cut(s) | 135, 576 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XapI | RAATTY | 1 cut(s) | 563 |
| XceI | RCATGY | 1 cut(s) | 263 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 301 |
| XspI | CTAG | 1 cut(s) | 494 |
| ZrmI | AGTACT | 1 cut(s) | 633 |