Rorug02G0385000

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Reverse (-)
49132734 .. 49135606
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0385000.1

Sequence Viewer

Length: 1122 bp
ATGTACAAACTCACTGCGCTATTGGTGCTACTATGCGCTGGTTGCCACACAAGTTTATCTGCTCCTACTGATGGTCTATTACCGAATGGCAACTTCGAGTATGGCCCTAAACCGTCACAAATATTGAAAGGCACGGTGGTAACAGCCCACAATGCCATTCCCAACTGGGAAACCTCAGGCCATATTGAATACATAAAATCCGGCCACAAGCAAGGCGACATGTTGCTGGTGGTTCCCGAGGGTGGCTTCGCCATCAGGCTTGGAAACGACGCCTCGATCAAGCAGAAGATCAAGGTGACCAATGGCGGCTTCTACTCCATAACGTTCAGTGCGGCCCATACGTGTGCACAAGAGGAGACAGTGAACATTTCAGTCAATCCCAACATTGAGAAACAAGACTTTGGCATAATTCCGGTTCAGACCACGTACAGCAACACTGGGTGGGATTCATATTCTTGGGGCTTTAACGCTTTTGCTGATGAGATTGAGGTAACCATCCATAACCCGGTGGTGGAGGAGGATCCGGCTTGTGGCCCGCTAATCGATTCGGTTGCTTTGAAGGTCATGGAGATTCCTCAACCTACTAGAGCCAACTTGTTGAAGAATGGCGACTTCGAAGAAGGACCTTATTTGTTTCCCAACACATCATGGGGTGTCCTCATCCCACCCCACATCGAAGATGACCACAGTCCACTACCAGGCTGGATCATCGAATCCCTCAAGGCCGTTAAATACATCGACTCCAATCACTACACCGTCCCCGAAGGTCGAAGGGCCATAGAGCTCGTCGCCGGAAAAGAGAGCGAATTGACCCAAGTGGTCTTCACCAAGCCCGGCAGGCGCTACGCCCTCACATTCTTAGTTGGCGACAGCAACAACGGCTGCCAAGGCTCCCTAGTTGTCGAGGCATTTGCCGGCAAGGACACGGTGAAGGTTCCTTACGAGTCCAAAGGTAAAGGAGGGTTCAAGAAGGCCAGGCTCCTCTTCACCGCCGTGTCGCCGCGCACACGTATCATGTTTCTGAGCACGTTCTATACCATGTCGAGCGATCACTCCGGCTCTCTGTGTGGTCCGGTGATCGATGATATCAAGTTGCTCGGCATTCGCGGACGACGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

373

Amino Acids

40.67

Weight (kDa)

6.08

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 25 - 187 2.2e-65 Protein of unknown function (DUF642)
DUF642 PF04862 198 - 364 5.5e-16 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1003, 1107
AciI CCGC 6 cut(s) 306, 332, 536, 990, 1001, 1107
AclI AACGTT 1 cut(s) 323
AclWI GGATC 3 cut(s) 515, 528, 713
AcoI YGGCCR 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 270
AdeI CACNNNGTG 1 cut(s) 441
AfaI GTAC 2 cut(s) 5, 428
AfiI CCNNNNNNNGG 6 cut(s) 71, 242, 505, 511, 530, 698
AflIII ACRYGT 4 cut(s) 219, 341, 1007, 1114
AgsI TTSAA 5 cut(s) 127, 188, 559, 601, 967
AjiI CACGTC 1 cut(s) 1115
AjnI CCWGG 2 cut(s) 697, 974
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AleI CACNNNNGTG 1 cut(s) 992
AluBI AGCT 1 cut(s) 784
AluI AGCT 1 cut(s) 784
Alw21I GWGCWC 3 cut(s) 349, 786, 1028
Alw26I GTCTC 1 cut(s) 350
Alw44I GTGCAC 1 cut(s) 345
AlwI GGATC 3 cut(s) 515, 528, 713
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 8 cut(s) 103, 178, 202, 333, 532, 723, 774, 972
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 882
ArsI GACNNNNNNTTYG 1 cut(s) 1101
AspLEI GCGC 4 cut(s) 19, 38, 843, 1005
AspS9I GGNCC 6 cut(s) 104, 334, 533, 623, 774, 1070
AsuC2I CCSGG 2 cut(s) 506, 834
AsuHPI GGTGA 5 cut(s) 307, 817, 940, 979, 1087
AsuII TTCGAA 1 cut(s) 615
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 623, 1070
AxyI CCTNAGG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 349
BamHI GGATCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 786
BarI GAAGNNNNNNTAC 2 cut(s) 923, 955
BbsI GAAGAC 1 cut(s) 814
Bbv12I GWGCWC 3 cut(s) 349, 786, 1028
BbvI GCAGC 1 cut(s) 869
BccI CCATC 3 cut(s) 65, 260, 503
BceAI ACGGC 3 cut(s) 710, 895, 977
BcgI CGANNNNNNTGC 4 cut(s) 533, 567, 893, 927
BciT130I CCWGG 2 cut(s) 699, 976
BcnI CCSGG 2 cut(s) 506, 834
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 585, 896
BfoI RGCGCY 1 cut(s) 844
BglI GCCNNNNNGGC 1 cut(s) 838
BisI GCNGC 4 cut(s) 307, 333, 883, 1001
BlsI GCNGC 4 cut(s) 308, 334, 884, 1002
Bme1390I CCNGG 4 cut(s) 506, 699, 834, 976
Bme18I GGWCC 2 cut(s) 623, 1070
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 1115
BmgT120I GGNCC 6 cut(s) 104, 334, 533, 623, 774, 1070
BmiI GGNNCC 5 cut(s) 234, 522, 892, 936, 980
BmrFI CCNGG 4 cut(s) 506, 699, 834, 976
BmrI ACTGGG 2 cut(s) 175, 447
BmuI ACTGGG 2 cut(s) 175, 447
BoxI GACNNNNGTC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 814
Bpu14I TTCGAA 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 2 cut(s) 506, 834
Bsa29I ATCGAT 2 cut(s) 543, 1080
BsaAI YACGTR 3 cut(s) 342, 426, 1010
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 237, 886
BsaWI WCCGGW 2 cut(s) 412, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 242, 505, 511, 530, 698
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 2 cut(s) 170, 442
Bse21I CCTNAGG 1 cut(s) 175
BseBI CCWGG 2 cut(s) 699, 976
BseCI ATCGAT 2 cut(s) 543, 1080
BseDI CCNNGG 2 cut(s) 237, 886
BseGI GGATG 2 cut(s) 495, 660
BseLI CCNNNNNNNGG 6 cut(s) 71, 242, 505, 511, 530, 698
BseMII CTCAG 2 cut(s) 189, 1013
BseNI ACTGG 2 cut(s) 170, 442
BseRI GAGGAG 3 cut(s) 368, 530, 971
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 1 cut(s) 869
Bsh1236I CGCG 2 cut(s) 1003, 1107
BshFI GGCC 8 cut(s) 105, 180, 204, 335, 534, 725, 776, 974
BshVI ATCGAT 2 cut(s) 543, 1080
BsiHKAI GWGCWC 3 cut(s) 349, 786, 1028
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 9 cut(s) 201, 413, 506, 524, 792, 834, 915, 1056, 1073
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 6 cut(s) 71, 242, 505, 511, 530, 698
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 743
BsmI GAATGC 1 cut(s) 1101
BsnI GGCC 8 cut(s) 105, 180, 204, 335, 534, 725, 776, 974
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 615
Bsp1286I GDGCHC 3 cut(s) 349, 786, 1028
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
BspACI CCGC 6 cut(s) 306, 332, 536, 990, 1001, 1107
BspANI GGCC 8 cut(s) 105, 180, 204, 335, 534, 725, 776, 974
BspCNI CTCAG 2 cut(s) 188, 1014
BspDI ATCGAT 2 cut(s) 543, 1080
BspFNI CGCG 2 cut(s) 1003, 1107
BspLI GGNNCC 5 cut(s) 234, 522, 892, 936, 980
BspPI GGATC 3 cut(s) 515, 528, 713
BspT104I TTCGAA 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 914
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 170, 442
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 2 cut(s) 237, 886
BssMI GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 886
Bst2UI CCWGG 2 cut(s) 699, 976
Bst4CI ACNGT 6 cut(s) 114, 136, 361, 689, 757, 928
Bst6I CTCTTC 1 cut(s) 989
BstACI GRCGYC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 3 cut(s) 342, 426, 1010
BstBI TTCGAA 1 cut(s) 615
BstC8I GCNNGC 3 cut(s) 536, 839, 916
BstDEI CTNAG 3 cut(s) 175, 859, 1022
BstEII GGTNACC 2 cut(s) 295, 490
BstF5I GGATG 2 cut(s) 495, 660
BstFNI CGCG 2 cut(s) 1003, 1107
BstH2I RGCGCY 1 cut(s) 844
BstHHI GCGC 4 cut(s) 19, 38, 843, 1005
BstKTI GATC 6 cut(s) 279, 291, 523, 708, 1051, 1080
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
BstMWI GCNNNNNNNGC 6 cut(s) 25, 42, 152, 838, 879, 888
BstNI CCWGG 2 cut(s) 699, 976
BstNSI RCATGY 1 cut(s) 223
BstPAI GACNNNNGTC 1 cut(s) 687
BstPI GGTNACC 2 cut(s) 295, 490
BstSCI CCNGG 4 cut(s) 504, 697, 832, 974
BstSLI GKGCMC 1 cut(s) 349
BstUI CGCG 2 cut(s) 1003, 1107
BstV1I GCAGC 1 cut(s) 869
BstV2I GAAGAC 1 cut(s) 814
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu15I ATCGAT 2 cut(s) 543, 1080
Bsu36I CCTNAGG 1 cut(s) 175
BsuRI GGCC 8 cut(s) 105, 180, 204, 335, 534, 725, 776, 974
BsuTUI ATCGAT 2 cut(s) 543, 1080
BtrI CACGTC 1 cut(s) 1115
BtsCI GGATG 2 cut(s) 495, 660
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 334, 366, 435
Cac8I GCNNGC 3 cut(s) 536, 839, 916
CfoI GCGC 4 cut(s) 19, 38, 843, 1005
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 6 cut(s) 104, 334, 533, 623, 774, 1070
ClaI ATCGAT 2 cut(s) 543, 1080
CseI GACGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 4, 427
CviAII CATG 5 cut(s) 220, 565, 648, 1015, 1039
CviQI GTAC 2 cut(s) 4, 427
DdeI CTNAG 3 cut(s) 175, 859, 1022
DpnI GATC 6 cut(s) 278, 290, 522, 707, 1050, 1079
DpnII GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
DraIII CACNNNGTG 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 989
EarI CTCTTC 1 cut(s) 989
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 786
Eco32I GATATC 1 cut(s) 1087
Eco47I GGWCC 2 cut(s) 623, 1070
Eco53kI GAGCTC 1 cut(s) 784
Eco81I CCTNAGG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 236
Eco91I GGTNACC 2 cut(s) 295, 490
EcoICRI GAGCTC 1 cut(s) 784
EcoO109I RGGNCCY 1 cut(s) 623
EcoO65I GGTNACC 2 cut(s) 295, 490
EcoRII CCWGG 2 cut(s) 697, 974
EcoRV GATATC 1 cut(s) 1087
EcoT14I CCWWGG 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 1 cut(s) 886
FaeI CATG 5 cut(s) 223, 568, 651, 1018, 1042
FaqI GGGAC 1 cut(s) 743
FatI CATG 5 cut(s) 219, 564, 647, 1014, 1038
FauI CCCGC 1 cut(s) 543
Fnu4HI GCNGC 4 cut(s) 307, 333, 883, 1001
FokI GGATG 2 cut(s) 482, 647
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 4 cut(s) 307, 333, 883, 1001
FspBI CTAG 2 cut(s) 585, 896
GlaI GCGC 4 cut(s) 18, 37, 842, 1004
GluI GCNGC 4 cut(s) 307, 333, 883, 1001
HaeII RGCGCY 1 cut(s) 844
HaeIII GGCC 8 cut(s) 105, 180, 204, 335, 534, 725, 776, 974
HapII CCGG 9 cut(s) 201, 413, 506, 524, 792, 834, 915, 1056, 1073
HgaI GACGC 1 cut(s) 278
HhaI GCGC 4 cut(s) 19, 38, 843, 1005
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 5 cut(s) 223, 568, 651, 1018, 1042
Hin6I GCGC 4 cut(s) 17, 36, 841, 1003
HinP1I GCGC 4 cut(s) 17, 36, 841, 1003
HinfI GANTC 6 cut(s) 446, 545, 571, 713, 740, 944
HpaII CCGG 9 cut(s) 201, 413, 506, 524, 792, 834, 915, 1056, 1073
HphI GGTGA 5 cut(s) 307, 817, 940, 979, 1087
Hpy166II GTNNAC 3 cut(s) 347, 364, 692
Hpy188I TCNGA 2 cut(s) 420, 1023
Hpy188III TCNNGA 2 cut(s) 236, 967
Hpy8I GTNNAC 3 cut(s) 347, 364, 692
Hpy99I CGWCG 3 cut(s) 272, 791, 1116
HpyAV CCTTC 6 cut(s) 553, 614, 758, 765, 925, 964
HpyCH4III ACNGT 6 cut(s) 114, 136, 361, 689, 757, 928
HpyCH4IV ACGT 6 cut(s) 323, 341, 425, 1009, 1028, 1114
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 42, 152, 838, 879, 888
HpyF3I CTNAG 3 cut(s) 175, 859, 1022
HpySE526I ACGT 6 cut(s) 323, 341, 425, 1009, 1028, 1114
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 5 cut(s) 223, 568, 651, 1018, 1042
HspAI GCGC 4 cut(s) 17, 36, 841, 1003
KroI GCCGGC 1 cut(s) 914
KroNI GCCGGC 1 cut(s) 916
Kzo9I GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
LmnI GCTCC 3 cut(s) 67, 896, 984
Lsp1109I GCAGC 1 cut(s) 869
MaeI CTAG 2 cut(s) 585, 896
MaeII ACGT 6 cut(s) 323, 341, 425, 1009, 1028, 1114
MaeIII GTNAC 4 cut(s) 114, 139, 295, 490
MalI GATC 6 cut(s) 278, 290, 522, 707, 1050, 1079
MboI GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
MboII GAAGA 6 cut(s) 298, 613, 629, 689, 814, 976
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 349, 786, 1028
MluCI AATT 2 cut(s) 408, 806
MlyI GAGTC 2 cut(s) 734, 953
MroNI GCCGGC 1 cut(s) 914
MseI TTAA 2 cut(s) 465, 729
MslI CAYNNNNRTG 2 cut(s) 342, 992
MspI CCGG 9 cut(s) 201, 413, 506, 524, 792, 834, 915, 1056, 1073
MspR9I CCNGG 4 cut(s) 506, 699, 834, 976
Mva1269I GAATGC 1 cut(s) 1101
MvaI CCWGG 2 cut(s) 699, 976
MvnI CGCG 2 cut(s) 1003, 1107
MwoI GCNNNNNNNGC 6 cut(s) 25, 42, 152, 838, 879, 888
NaeI GCCGGC 1 cut(s) 916
NciI CCSGG 2 cut(s) 506, 834
NdeII GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
NgoMIV GCCGGC 1 cut(s) 914
NlaIII CATG 5 cut(s) 223, 568, 651, 1018, 1042
NlaIV GGNNCC 5 cut(s) 234, 522, 892, 936, 980
NmeAIII GCCGAG 1 cut(s) 1077
NmuCI GTSAC 2 cut(s) 114, 295
NspI RCATGY 1 cut(s) 223
NspV TTCGAA 1 cut(s) 615
OliI CACNNNNGTG 1 cut(s) 992
PciI ACATGT 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 1111
PctI GAATGC 1 cut(s) 1101
PdiI GCCGGC 1 cut(s) 916
PfeI GAWTC 4 cut(s) 446, 545, 571, 713
PkrI GCNGC 4 cut(s) 308, 334, 884, 1002
PleI GAGTC 2 cut(s) 734, 952
PpsI GAGTC 2 cut(s) 734, 952
Ppu21I YACGTR 3 cut(s) 342, 426, 1010
PpuMI RGGWCCY 1 cut(s) 623
PscI ACATGT 1 cut(s) 219
PshAI GACNNNNGTC 1 cut(s) 687
Psp124BI GAGCTC 1 cut(s) 786
Psp1406I AACGTT 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 697, 974
PspEI GGTNACC 2 cut(s) 295, 490
PspGI CCWGG 2 cut(s) 697, 974
PspN4I GGNNCC 5 cut(s) 234, 522, 892, 936, 980
PspPI GGNCC 6 cut(s) 104, 334, 533, 623, 774, 1070
PspPPI RGGWCCY 1 cut(s) 623
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 2 cut(s) 5, 428
RsaNI GTAC 2 cut(s) 4, 427
RseI CAYNNNNRTG 2 cut(s) 342, 992
SacI GAGCTC 1 cut(s) 786
SaqAI TTAA 2 cut(s) 465, 729
SatI GCNGC 4 cut(s) 307, 333, 883, 1001
Sau3AI GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
Sau96I GGNCC 6 cut(s) 104, 334, 533, 623, 774, 1070
SchI GAGTC 2 cut(s) 734, 953
ScrFI CCNGG 4 cut(s) 506, 699, 834, 976
SduI GDGCHC 3 cut(s) 349, 786, 1028
SfuI TTCGAA 1 cut(s) 615
SinI GGWCC 2 cut(s) 623, 1070
SmiMI CAYNNNNRTG 2 cut(s) 342, 992
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 2 cut(s) 408, 806
SsiI CCGC 6 cut(s) 306, 332, 536, 990, 1001, 1107
SspI AATATT 1 cut(s) 123
SspMI CTAG 2 cut(s) 585, 896
SstI GAGCTC 1 cut(s) 786
StyD4I CCNGG 4 cut(s) 504, 697, 832, 974
StyI CCWWGG 1 cut(s) 886
TaaI ACNGT 6 cut(s) 114, 136, 361, 689, 757, 928
TaiI ACGT 6 cut(s) 326, 344, 428, 1012, 1031, 1117
TasI AATT 2 cut(s) 408, 806
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 309, 335, 1003
TfiI GAWTC 4 cut(s) 446, 545, 571, 713
Tru1I TTAA 2 cut(s) 465, 729
Tru9I TTAA 2 cut(s) 465, 729
TscAI CASTG 4 cut(s) 19, 334, 366, 442
TseFI GTSAC 2 cut(s) 114, 295
TseI GCWGC 1 cut(s) 882
Tsp45I GTSAC 2 cut(s) 114, 295
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 4 cut(s) 19, 334, 366, 442
VneI GTGCAC 1 cut(s) 345
VpaK11BI GGWCC 2 cut(s) 623, 1070
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XspI CTAG 2 cut(s) 585, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.