Rroxscaffold_4G00327720

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000056
Physical Location & Seq
Reverse (-)
60602030 .. 60608835
6806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327720.1

Sequence Viewer

Length: 777 bp
ATGTCTAGAAGTCATTTTTTCTGTAACCTTGTGACCCAAATAGAAGGCACCGGTGAAGCCCCGTTCCCTGTGGACATGCTCTTCATCAAATTTATACTATTGAAGCTTTACGGACGCCGCCTCTCGACTCAGAATCCAGGAGAATTTGTTACGTGTGAAGAGGAACTTGTTGCTGAAAGAGAAATTATGGCCCCTGTCTCTGATTTCAAGCTCTTATCCGAAAGGCCTCGGTGGACAGATATCATGGCTGATCAGCTGTTTGACATGGGTGTGCCAGGAAATCAGCACCCGGATATTTTCGAAAAAATATTTATGGTGGCTGAAGTTGCTGTGCCCGGGCTGCCTATTCTTGCAGGAATAGGGGACATTCTTGAACATATAGTGGACAGTAGCAGTGATACCGGTGAAACAACGAGAGCGGAATCCTCAACAGCATATACGTTCGAGAACATATTGATTCCTGCGGCGAAATCTTCCATTGAGGGTTTGGAGAAAGTGAGAGTAGTTGATGATGTTATTAGAGAGACGCCGTTGTGTGTTATATGTCACGAAAACCTTGATCACTTTGATGATAATGCTGCAAAAGAAGAAGGGGTAGTTGATCTTGATCTTGATCATCAACCCATGATTACTCGCTTGCCGTGCTCACACCAATTTCATGGATACTGCATTGTCCGGTGGCTGAAGATTCATCACTTATGTCCCGTGTGCCGATATCCAATGCCAACCAAGGATGAGATTGACAAGCCAAAATCCAAAAGGAGCAGGGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000815 GO:0000920 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008289 GO:0008333 GO:0009056 GO:0009987 GO:0010008 GO:0010256 GO:0010564 GO:0010824 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0019058 GO:0019068 GO:0019899 GO:0022411 GO:0022607 GO:0031090 GO:0031210 GO:0031410 GO:0031982 GO:0032386 GO:0032509 GO:0032510 GO:0032879 GO:0032886 GO:0032984 GO:0032991 GO:0033043 GO:0034622 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040012 GO:0040013 GO:0040017 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046605 GO:0046755 GO:0046907 GO:0046983 GO:0048284 GO:0048518 GO:0048519 GO:0048524 GO:0048525 GO:0050789 GO:0050792 GO:0050794 GO:0050997 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051258 GO:0051259 GO:0051291 GO:0051301 GO:0051493 GO:0051641 GO:0051649 GO:0051704 GO:0051726 GO:0060341 GO:0060627 GO:0061024 GO:0061025 GO:0061763 GO:0061919 GO:0065003 GO:0065007 GO:0070405 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0071985 GO:0090174 GO:0097352 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1902186 GO:1902187 GO:1902188 GO:1903649 GO:1903900 GO:1903901 GO:1903902 GO:1990381 GO:2000641
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7 zf-RING_2

Protein Analysis

258

Amino Acids

29.21

Weight (kDa)

5.06

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 179 - 238 9.8e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 207 - 238 8e-09 Ring finger domain
zf-C3HC4_2 PF13923 207 - 237 3.6e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccBSI CCGCTC 1 cut(s) 419
AciI CCGC 3 cut(s) 118, 419, 464
AcsI RAATTY 2 cut(s) 89, 143
AcuI CTGAAG 2 cut(s) 342, 704
AcyI GRCGYC 2 cut(s) 115, 527
AflIII ACRYGT 1 cut(s) 152
AgeI ACCGGT 2 cut(s) 50, 401
AgsI TTSAA 3 cut(s) 103, 208, 374
AjnI CCWGG 2 cut(s) 136, 274
AluBI AGCT 3 cut(s) 106, 211, 256
AluI AGCT 3 cut(s) 106, 211, 256
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 2 cut(s) 202, 518
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 2 cut(s) 189, 224
ApeKI GCWGC 2 cut(s) 340, 578
ApoI RAATTY 2 cut(s) 89, 143
AsiGI ACCGGT 2 cut(s) 50, 401
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 3 cut(s) 290, 336, 337
AsuHPI GGTGA 2 cut(s) 65, 416
AsuII TTCGAA 1 cut(s) 300
AvaI CYCGRG 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 2 cut(s) 327, 565
BceAI ACGGC 2 cut(s) 514, 625
BciT130I CCWGG 2 cut(s) 138, 276
BciVI GTATCC 1 cut(s) 656
BclI TGATCA 3 cut(s) 250, 559, 613
BcnI CCSGG 3 cut(s) 290, 336, 337
BcoDI GTCTC 2 cut(s) 202, 518
BfaI CTAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 656
BisI GCNGC 4 cut(s) 118, 341, 465, 579
BlsI GCNGC 4 cut(s) 119, 342, 466, 580
Bme1390I CCNGG 5 cut(s) 138, 276, 290, 336, 337
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 49, 192
BmrFI CCNGG 5 cut(s) 138, 276, 290, 336, 337
Bpu14I TTCGAA 1 cut(s) 300
BpuMI CCSGG 3 cut(s) 290, 336, 337
BsaAI YACGTR 1 cut(s) 153
BsaBI GATNNNNATC 2 cut(s) 606, 612
BsaHI GRCGYC 2 cut(s) 115, 527
BsaJI CCNNGG 3 cut(s) 227, 335, 729
BsaWI WCCGGW 3 cut(s) 50, 401, 675
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse118I RCCGGY 2 cut(s) 50, 401
Bse8I GATNNNNATC 2 cut(s) 606, 612
BseBI CCWGG 2 cut(s) 138, 276
BseDI CCNNGG 3 cut(s) 227, 335, 729
BseGI GGATG 1 cut(s) 739
BseJI GATNNNNATC 2 cut(s) 606, 612
BseMII CTCAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 2 cut(s) 327, 565
BshFI GGCC 2 cut(s) 191, 226
BshNI GGYRCC 1 cut(s) 47
BshTI ACCGGT 2 cut(s) 50, 401
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 5 cut(s) 51, 290, 336, 402, 676
BslFI GGGAC 2 cut(s) 377, 687
BsmAI GTCTC 2 cut(s) 202, 518
BsmBI CGTCTC 1 cut(s) 518
BsmFI GGGAC 2 cut(s) 377, 687
BsnI GGCC 2 cut(s) 191, 226
BsoBI CYCGRG 1 cut(s) 335
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 336, 647
Bsp143I GATC 5 cut(s) 250, 559, 601, 607, 613
BspACI CCGC 3 cut(s) 118, 419, 464
BspANI GGCC 2 cut(s) 191, 226
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 49, 192
BspQI GCTCTTC 1 cut(s) 86
BspT104I TTCGAA 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 419
BsrFI RCCGGY 2 cut(s) 50, 401
BssAI RCCGGY 2 cut(s) 50, 401
BssECI CCNNGG 3 cut(s) 227, 335, 729
BssMI GATC 5 cut(s) 250, 559, 601, 607, 613
BssNI GRCGYC 2 cut(s) 115, 527
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 2 cut(s) 138, 276
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 2 cut(s) 86, 153
BstACI GRCGYC 2 cut(s) 115, 527
BstBAI YACGTR 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 739
BstKTI GATC 5 cut(s) 253, 562, 604, 610, 616
BstMAI GTCTC 2 cut(s) 202, 518
BstMBI GATC 5 cut(s) 250, 559, 601, 607, 613
BstMWI GCNNNNNNNGC 3 cut(s) 326, 340, 642
BstNI CCWGG 2 cut(s) 138, 276
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 5 cut(s) 136, 274, 288, 334, 335
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 327, 565
BstXI CCANNNNNNTGG 1 cut(s) 659
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 2 cut(s) 191, 226
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 638
Cfr10I RCCGGY 2 cut(s) 50, 401
Cfr13I GGNCC 1 cut(s) 190
Cfr9I CCCGGG 1 cut(s) 335
CseI GACGC 2 cut(s) 123, 535
CspAI ACCGGT 2 cut(s) 50, 401
CviAII CATG 5 cut(s) 76, 244, 265, 625, 659
DdeI CTNAG 1 cut(s) 129
DpnI GATC 5 cut(s) 252, 561, 603, 609, 615
DpnII GATC 5 cut(s) 250, 559, 601, 607, 613
Eam1104I CTCTTC 2 cut(s) 86, 153
EarI CTCTTC 2 cut(s) 86, 153
Eco130I CCWWGG 1 cut(s) 729
Eco147I AGGCCT 1 cut(s) 226
Eco32I GATATC 2 cut(s) 241, 716
Eco57I CTGAAG 2 cut(s) 342, 704
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 136, 274
EcoRV GATATC 2 cut(s) 241, 716
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 5 cut(s) 79, 247, 268, 628, 662
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 2 cut(s) 377, 687
FatI CATG 5 cut(s) 75, 243, 264, 624, 658
FbaI TGATCA 3 cut(s) 250, 559, 613
Fnu4HI GCNGC 4 cut(s) 118, 341, 465, 579
FokI GGATG 1 cut(s) 746
Fsp4HI GCNGC 4 cut(s) 118, 341, 465, 579
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 118, 341, 465, 579
HaeIII GGCC 2 cut(s) 191, 226
HapII CCGG 5 cut(s) 51, 290, 336, 402, 676
HgaI GACGC 2 cut(s) 123, 535
Hin1I GRCGYC 2 cut(s) 115, 527
Hin1II CATG 5 cut(s) 79, 247, 268, 628, 662
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 5 cut(s) 127, 133, 422, 457, 688
HpaII CCGG 5 cut(s) 51, 290, 336, 402, 676
HphI GGTGA 2 cut(s) 65, 416
Hpy166II GTNNAC 3 cut(s) 73, 234, 385
Hpy188I TCNGA 3 cut(s) 132, 202, 220
Hpy188III TCNNGA 7 cut(s) 6, 124, 371, 445, 548, 605, 611
Hpy8I GTNNAC 3 cut(s) 73, 234, 385
HpyAV CCTTC 2 cut(s) 38, 584
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 2 cut(s) 152, 440
HpyCH4V TGCA 3 cut(s) 353, 581, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 340, 642
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 152, 440
Hsp92I GRCGYC 2 cut(s) 115, 527
Hsp92II CATG 5 cut(s) 79, 247, 268, 628, 662
Ksp22I TGATCA 3 cut(s) 250, 559, 613
Kzo9I GATC 5 cut(s) 250, 559, 601, 607, 613
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 762
Lsp1109I GCAGC 2 cut(s) 327, 565
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 152, 440
MaeIII GTNAC 4 cut(s) 23, 31, 148, 545
MalI GATC 5 cut(s) 252, 561, 603, 609, 615
MbiI CCGCTC 1 cut(s) 419
MboI GATC 5 cut(s) 250, 559, 601, 607, 613
MboII GAAGA 5 cut(s) 73, 170, 465, 599, 697
MhlI GDGCHC 2 cut(s) 336, 647
MluCI AATT 4 cut(s) 89, 143, 183, 653
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 5 cut(s) 131, 154, 237, 436, 475
MslI CAYNNNNRTG 2 cut(s) 269, 567
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 5 cut(s) 51, 290, 336, 402, 676
MspR9I CCNGG 5 cut(s) 138, 276, 290, 336, 337
MvaI CCWGG 2 cut(s) 138, 276
MwoI GCNNNNNNNGC 3 cut(s) 326, 340, 642
NciI CCSGG 3 cut(s) 290, 336, 337
NdeII GATC 5 cut(s) 250, 559, 601, 607, 613
NlaIII CATG 5 cut(s) 79, 247, 268, 628, 662
NlaIV GGNNCC 2 cut(s) 49, 192
NmuCI GTSAC 2 cut(s) 31, 545
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 300
PceI AGGCCT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 4 cut(s) 133, 422, 457, 688
PfoI TCCNGGA 1 cut(s) 136
PinAI ACCGGT 2 cut(s) 50, 401
PkrI GCNGC 4 cut(s) 119, 342, 466, 580
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 136, 274
PspGI CCWGG 2 cut(s) 136, 274
PspN4I GGNNCC 2 cut(s) 49, 192
PspPI GGNCC 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 269, 567
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 4 cut(s) 118, 341, 465, 579
Sau3AI GATC 5 cut(s) 250, 559, 601, 607, 613
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 5 cut(s) 138, 276, 290, 336, 337
SduI GDGCHC 2 cut(s) 336, 647
SetI ASST 7 cut(s) 30, 108, 155, 213, 258, 443, 558
SfuI TTCGAA 1 cut(s) 300
SgrAI CRCCGGYG 1 cut(s) 50
SmaI CCCGGG 1 cut(s) 337
SmiMI CAYNNNNRTG 2 cut(s) 269, 567
SrfI GCCCGGGC 1 cut(s) 337
Sse9I AATT 4 cut(s) 89, 143, 183, 653
SseBI AGGCCT 1 cut(s) 226
SsiI CCGC 3 cut(s) 118, 419, 464
SspI AATATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 226
StyD4I CCNGG 5 cut(s) 136, 274, 288, 334, 335
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 2 cut(s) 155, 443
TaqI TCGA 3 cut(s) 125, 300, 444
TasI AATT 4 cut(s) 89, 143, 183, 653
TauI GCSGC 2 cut(s) 120, 467
TfiI GAWTC 4 cut(s) 133, 422, 457, 688
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 2 cut(s) 31, 545
TseI GCWGC 2 cut(s) 340, 578
Tsp45I GTSAC 2 cut(s) 31, 545
TspDTI ATGAA 3 cut(s) 73, 647, 680
TspGWI ACGGA 1 cut(s) 126
TspMI CCCGGG 1 cut(s) 335
TspRI CASTG 1 cut(s) 400
XapI RAATTY 2 cut(s) 89, 143
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmaI CCCGGG 1 cut(s) 335
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.