Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000056

Physical Location & Seq

Genomic Coordinates Reverse (-)

34625355 .. 34631749

Gene Structure 6395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG321600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGTGCTTCGGTTATCCACCAAAGTGAAACAAGAAAGTAGCCCATACCCAGATCGGGGGGAGGTGAGCGAGGATTATATTCTCGTGAAAGTAAGGTTTTCGAGGGCAATTGGGAGCCGCAGTAGCCTTGATTACCCATTGTGCACTATCAACAATGCAAAAGAAGAGAAGTTGGAAGATATGCTTCATGTGACCATAACCATTTTCTGGTTTTGGAAGCAAAGTTTAATTATCAACACATGGCCAATACTTTATCCCTGTACAGGTGACATAGCCTGTAATGCTAGAAACAAGTACCCTCCCCAAGTTTTCAATAATGAAAACCACAAACTCAACTTGTATGGAGATAATGTCGAGGGGACCGTGAAGTTGTCCCGAGTAGAACTTGCTTCAAGGACACGAAAAGCATCTGGGGTGATGTTGGCGGCATCCACTCAAAAGCTTGACCGATACTCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

154

Amino Acids

17.63

Weight (kDa)

9.15

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74620
fragaria_vesca	FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica	MD14G1195700.v1.1
prunus_persica	Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis	pycom17g01390
rosa_chinensis	RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata	RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora	Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii	Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa	Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha	Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana	Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	210
AciI	CCGC	2 cut(s)	121, 428
AcoI	YGGCCR	1 cut(s)	245
AfaI	GTAC	2 cut(s)	265, 299
AfiI	CCNNNNNNNGG	4 cut(s)	58, 59, 210, 266
AgsI	TTSAA	2 cut(s)	316, 396
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw21I	GWGCWC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	1 cut(s)	245
ApaLI	GTGCAC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	363
AsuHPI	GGTGA	3 cut(s)	79, 281, 430
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	247
BauI	CACGAG	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	288
BisI	GCNGC	2 cut(s)	121, 429
BlsI	GCNGC	2 cut(s)	122, 430
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	2 cut(s)	119, 364
BmsI	GCATC	2 cut(s)	419, 440
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 339, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 59, 210, 266
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	4 cut(s)	58, 59, 210, 266
BseSI	GKGCMC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	361, 376
BslI	CCNNNNNNNGG	4 cut(s)	58, 59, 210, 266
BsmFI	GGGAC	2 cut(s)	361, 376
BsnI	GGCC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	2 cut(s)	121, 428
BspANI	GGCC	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	119, 364
BsrGI	TGTACA	1 cut(s)	263
BssMI	GATC	1 cut(s)	55
BssSI	CACGAG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	431
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 284
BstSLI	GKGCMC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	264, 298
CviAII	CATG	2 cut(s)	191, 243
CviJI	RGCY	6 cut(s)	45, 120, 129, 247, 278, 445
CviKI_1	RGCY	6 cut(s)	45, 120, 129, 247, 278, 445
CviQI	GTAC	2 cut(s)	264, 298
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	378
FaeI	CATG	2 cut(s)	194, 246
FaiI	YATR	8 cut(s)	49, 81, 185, 192, 200, 244, 275, 345
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	361, 376
FatI	CATG	2 cut(s)	190, 242
Fnu4HI	GCNGC	2 cut(s)	121, 429
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	121, 429
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	2 cut(s)	121, 429
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	194, 246
HindIII	AAGCTT	1 cut(s)	443
HphI	GGTGA	3 cut(s)	79, 281, 430
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	88, 378
Hpy8I	GTNNAC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	147, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 284
Hsp92II	CATG	2 cut(s)	194, 246
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	6 cut(s)	66, 196, 252, 274, 292, 399
LweI	GCATC	2 cut(s)	419, 440
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	193, 269
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	179, 191
MfeI	CAATTG	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	2 cut(s)	111, 231
MluNI	TGGCCA	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	58, 67, 99, 312, 352
Mox20I	TGGCCA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	247
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	247
MunI	CAATTG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	126, 284
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	194, 246
NlaIV	GGNNCC	2 cut(s)	119, 364
NmuCI	GTSAC	2 cut(s)	193, 269
OliI	CACNNNNGTG	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	122, 430
PspN4I	GGNNCC	2 cut(s)	119, 364
PspPI	GGNCC	1 cut(s)	363
RsaI	GTAC	2 cut(s)	265, 299
RsaNI	GTAC	2 cut(s)	264, 298
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	121, 429
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	4 cut(s)	69, 101, 271, 447
SfaNI	GCATC	2 cut(s)	419, 440
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	111, 231
SsiI	CCGC	2 cut(s)	121, 428
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	104, 357
TaqII	GACCGA	1 cut(s)	465
TasI	AATT	2 cut(s)	111, 231
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	2 cut(s)	123, 431
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	193, 269
Tsp45I	GTSAC	2 cut(s)	193, 269
TspDTI	ATGAA	2 cut(s)	179, 336
Van91I	CCANNNNNTGG	1 cut(s)	210
VneI	GTGCAC	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	363
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.