Rorug04G0326300

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000056
Physical Location & Seq
Reverse (-)
50136412 .. 50139068
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0326300.1

Sequence Viewer

Length: 1560 bp
ATGAAACTCTTCATAATAGCCAACCTCTCCATCCTACTTTTTTGGTTTGGAGCTTCTACCCTCACTCTCACTCTCCTCTCATTCTTCTTCTATGTCTTCCTCTTCGTCCTAAACCACTACCTCGTCCCTGGAGGCTCTGCATGGTCAGGTTACCGCCATGCATTGAAACTCCGGGGACCAGTGGGGTGGCCTGTATTGGGTTCCATATCCGACCAAATGAGCGCTCTTGCTCATCGTAAACTGGCCGGCATGGCAGCTTCGCTGGATGCAAAGAGACTCATGGTGTACAGTCTAGGAACCAGGACACGTGTCATCATTAGCAGCCACCCGGAGACTGCTAAGCAAATCCTAGGAGGGTCTTCCTTTTCCGACCGTCCTATTAAGCAATCCGCTCGAGCACTAATGTTCGAGCGCGCTATAGGGTTTGCTCCTTCCGGCGCGTACTGGCGCCACCTGCGTAGGTTAGCTGCAGTCCACATGTTCTCGCCGAAGAGAATTGCCGGACTGGAAGGGCTAAGGCAGCACCTGGTGGACAGAATGGTCGTGAGAGTGGAGAAGGAGATGGAGGAGAGGAGATTTGTGGGTGTGAAAGGAATATTGCAGGAGGGTTCTCTGAATAACATAATTGAGAGTGTTTTTGGTTTAGGGTTAGAGAAGGAGGGTAGTACTGACTTGACGTTGACTCTGCATGCTATGGTCACAGAAGGGTATGACTTAATTTCTAGGTTTAATTTGGAGGACTATTTTCCTCTGAGGTTCTTGGACTTCCATGGTGTGAAGAGGAAGTGTCACAAATTGGCGGCTAAGGTTAAGTGTGTGGTGGGTCAAATTGTGGAGGAAAGAAAAAGAGCAGGAGATTTCAGTGGTCGGAGTGACTTTCTTAGTGCTTTGCTAGCTTTGTCTGTGGAGGATCAATTAAGTGATTCAGACTTGGTTGCTGTTTTGTGGGAAATGATATTTCGAGGGACAGACACTGTTGCTATACTTCTTGAATGGATTATGGCAAGGATTGCCCTGCACCAAGACATCCAAGCCAAGGCACAAGAAGAGCTTGATACGATCGTTGGGAATCACAGGCACGTGAGGGATTCTGACCTTTCGAAACTGCCGTATCTTCAGGCCATAGTTAAGGAAGTGCTCCGGGTGCACCCTCCGGGCCCATTATTATCTTGGGCTCGTCTGGCCGTGCATGACGTCCACGTCGACAAGGTCTTTGTTCCGGCCGGCACAACGGCCATGGTCAACATGTGGGCTATAACCCATGACCCGGCCATTTGGAAGGACCCTTGGACTTTCAAGCCTGAGCGGTTCATTGAAGAAGATGTGTCGATAATGGGATCGGACCTTAGGCTTGCGCCCTTTGGTTCGGGCCGTAGGGTATGCCCAGGAAAAGCGCTAGGGTTAGCTACAGTGCACTTGTGGCTTGCAAGGCTTTTGCACCAATTCAAGTGGTTTCCGGCGGAGCCTGTAGACCTTTCGGAGTGCTTAATGCTCTCTATGGAAATGAAGAAACCACTCGTCTGCCGCGTTATCCCGCGTGGCGGCCTTACAAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

519

Amino Acids

58.3

Weight (kDa)

9.37

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 59 - 503 1.5e-78 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 462
AasI GACNNNNNNGTC 2 cut(s) 539, 1199
AatII GACGTC 1 cut(s) 1197
Acc36I ACCTGC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 447
AccBSI CCGCTC 2 cut(s) 392, 1306
AccI GTMKAC 2 cut(s) 1203, 1470
AccII CGCG 4 cut(s) 414, 440, 1527, 1537
AciI CCGC 8 cut(s) 154, 390, 800, 1306, 1460, 1525, 1535, 1542
AclWI GGATC 2 cut(s) 918, 1345
AcoI YGGCCR 5 cut(s) 243, 1182, 1221, 1233, 1269
AcuI CTGAAG 1 cut(s) 1100
AcvI CACGTG 2 cut(s) 308, 1081
AcyI GRCGYC 2 cut(s) 448, 1194
AdeI CACNNNGTG 1 cut(s) 529
AfaI GTAC 3 cut(s) 287, 443, 667
AfeI AGCGCT 2 cut(s) 223, 1395
AfiI CCNNNNNNNGG 4 cut(s) 197, 1036, 1267, 1541
AflIII ACRYGT 4 cut(s) 305, 307, 477, 1245
AgsI TTSAA 5 cut(s) 166, 992, 1297, 1316, 1447
AjiI CACGTC 1 cut(s) 1201
AjnI CCWGG 4 cut(s) 127, 299, 525, 1384
AluBI AGCT 6 cut(s) 53, 257, 467, 896, 1051, 1406
AluI AGCT 6 cut(s) 53, 257, 467, 896, 1051, 1406
Alw21I GWGCWC 4 cut(s) 400, 1140, 1149, 1416
Alw26I GTCTC 2 cut(s) 268, 326
Alw44I GTGCAC 2 cut(s) 1145, 1412
AlwI GGATC 2 cut(s) 918, 1345
AlwNI CAGNNNCTG 2 cut(s) 526, 974
Ama87I CYCGRG 1 cut(s) 393
Aor51HI AGCGCT 2 cut(s) 223, 1395
ApaI GGGCCC 1 cut(s) 1160
ApaLI GTGCAC 2 cut(s) 1145, 1412
ApeKI GCWGC 4 cut(s) 254, 321, 467, 520
ArsI GACNNNNNNTTYG 2 cut(s) 1196, 1228
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 349
AspLEI GCGC 7 cut(s) 224, 414, 416, 440, 450, 1357, 1396
AspS9I GGNCC 6 cut(s) 176, 1156, 1157, 1282, 1342, 1369
AsuC2I CCSGG 5 cut(s) 173, 329, 1142, 1155, 1268
AsuII TTCGAA 1 cut(s) 1100
AsuNHI GCTAGC 1 cut(s) 892
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 3 cut(s) 176, 1282, 1342
AvrII CCTAGG 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 1346
BaeGI GKGCMC 3 cut(s) 1149, 1160, 1416
BaeI ACNNNNGTAYC 4 cut(s) 1047, 1080, 1094, 1127
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 2 cut(s) 1160, 1177
BbrPI CACGTG 2 cut(s) 308, 1081
BbsI GAAGAC 2 cut(s) 88, 351
Bbv12I GWGCWC 4 cut(s) 400, 1140, 1149, 1416
BbvI GCAGC 4 cut(s) 266, 333, 454, 532
BccI CCATC 2 cut(s) 38, 556
BceAI ACGGC 4 cut(s) 1093, 1169, 1248, 1356
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 4 cut(s) 129, 301, 527, 1386
BcnI CCSGG 5 cut(s) 173, 329, 1142, 1155, 1268
BcoDI GTCTC 2 cut(s) 268, 326
BfaI CTAG 5 cut(s) 293, 350, 723, 893, 1397
BfmI CTRYAG 4 cut(s) 417, 468, 1407, 1467
BfoI RGCGCY 3 cut(s) 225, 451, 1397
BfuAI ACCTGC 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 7 cut(s) 255, 322, 468, 521, 801, 1525, 1543
BlnI CCTAGG 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 7 cut(s) 256, 323, 469, 522, 802, 1526, 1544
BmcAI AGTACT 1 cut(s) 667
Bme1390I CCNGG 9 cut(s) 129, 173, 301, 329, 527, 1142, 1155, 1268, 1386
Bme18I GGWCC 3 cut(s) 176, 1282, 1342
BmeT110I CYCGRG 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 1201
BmgT120I GGNCC 6 cut(s) 176, 1156, 1157, 1282, 1342, 1369
BmiI GGNNCC 7 cut(s) 177, 202, 298, 449, 1158, 1284, 1464
BmrFI CCNGG 9 cut(s) 129, 173, 301, 329, 527, 1142, 1155, 1268, 1386
BmsI GCATC 1 cut(s) 256
BmtI GCTAGC 1 cut(s) 896
BoxI GACNNNNGTC 1 cut(s) 308
BpiI GAAGAC 2 cut(s) 88, 351
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 3 cut(s) 515, 804, 1302
Bpu1102I GCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 1100
BpuMI CCSGG 5 cut(s) 173, 329, 1142, 1155, 1268
BsaAI YACGTR 2 cut(s) 308, 1081
BsaHI GRCGYC 2 cut(s) 448, 1194
BsaJI CCNNGG 8 cut(s) 127, 172, 349, 769, 1035, 1236, 1286, 1384
Bsc4I CCNNNNNNNGG 4 cut(s) 197, 1036, 1267, 1541
Bse118I RCCGGY 2 cut(s) 245, 1223
Bse1I ACTGG 4 cut(s) 179, 246, 449, 510
Bse21I CCTNAGG 1 cut(s) 1346
BseBI CCWGG 4 cut(s) 129, 301, 527, 1386
BseDI CCNNGG 8 cut(s) 127, 172, 349, 769, 1035, 1236, 1286, 1384
BseGI GGATG 3 cut(s) 30, 271, 1026
BseLI CCNNNNNNNGG 4 cut(s) 197, 1036, 1267, 1541
BseMII CTCAG 2 cut(s) 743, 1293
BseNI ACTGG 4 cut(s) 179, 246, 449, 510
BsePI GCGCGC 1 cut(s) 412
BseRI GAGGAG 3 cut(s) 65, 581, 586
BseSI GKGCMC 3 cut(s) 1149, 1160, 1416
BseX3I CGGCCG 1 cut(s) 1221
BseXI GCAGC 4 cut(s) 266, 333, 454, 532
BsgI GTGCAG 1 cut(s) 1001
Bsh1236I CGCG 4 cut(s) 414, 440, 1527, 1537
Bsh1285I CGRYCG 3 cut(s) 373, 1062, 1224
BshNI GGYRCC 1 cut(s) 447
BsiEI CGRYCG 3 cut(s) 373, 1062, 1224
BsiHKAI GWGCWC 4 cut(s) 400, 1140, 1149, 1416
BsiHKCI CYCGRG 1 cut(s) 393
BslFI GGGAC 3 cut(s) 110, 189, 979
BslI CCNNNNNNNGG 4 cut(s) 197, 1036, 1267, 1541
BsmAI GTCTC 2 cut(s) 268, 326
BsmFI GGGAC 3 cut(s) 110, 189, 979
BsoBI CYCGRG 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 1100
Bsp120I GGGCCC 1 cut(s) 1156
Bsp1286I GDGCHC 6 cut(s) 400, 1140, 1149, 1160, 1177, 1416
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 910, 1059, 1337
Bsp1720I GCTNAGC 1 cut(s) 339
Bsp19I CCATGG 2 cut(s) 769, 1236
BspACI CCGC 8 cut(s) 154, 390, 800, 1306, 1460, 1525, 1535, 1542
BspCNI CTCAG 2 cut(s) 744, 1294
BspFNI CGCG 4 cut(s) 414, 440, 1527, 1537
BspLI GGNNCC 7 cut(s) 177, 202, 298, 449, 1158, 1284, 1464
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 462
BspOI GCTAGC 1 cut(s) 896
BspPI GGATC 2 cut(s) 918, 1345
BspQI GCTCTTC 1 cut(s) 1041
BspT104I TTCGAA 1 cut(s) 1100
BspT107I GGYRCC 1 cut(s) 447
BsrBI CCGCTC 2 cut(s) 392, 1306
BsrFI RCCGGY 2 cut(s) 245, 1223
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 4 cut(s) 179, 246, 449, 510
BssAI RCCGGY 2 cut(s) 245, 1223
BssECI CCNNGG 8 cut(s) 127, 172, 349, 769, 1035, 1236, 1286, 1384
BssHII GCGCGC 1 cut(s) 412
BssMI GATC 3 cut(s) 910, 1059, 1337
BssNI GRCGYC 2 cut(s) 448, 1194
BssT1I CCWWGG 5 cut(s) 349, 769, 1035, 1236, 1286
Bst2UI CCWGG 4 cut(s) 129, 301, 527, 1386
Bst4CI ACNGT 4 cut(s) 290, 374, 976, 1411
Bst6I CTCTTC 5 cut(s) 14, 107, 485, 773, 1041
BstACI GRCGYC 2 cut(s) 448, 1194
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstAUI TGTACA 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 308, 1081
BstBI TTCGAA 1 cut(s) 1100
BstC8I GCNNGC 7 cut(s) 247, 414, 690, 894, 1225, 1353, 1425
BstDEI CTNAG 7 cut(s) 339, 515, 752, 804, 881, 1302, 1346
BstDSI CCRYGG 2 cut(s) 769, 1236
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 3 cut(s) 30, 271, 1026
BstFNI CGCG 4 cut(s) 414, 440, 1527, 1537
BstH2I RGCGCY 3 cut(s) 225, 451, 1397
BstHHI GCGC 7 cut(s) 224, 414, 416, 440, 450, 1357, 1396
BstKTI GATC 3 cut(s) 913, 1062, 1340
BstMAI GTCTC 2 cut(s) 268, 326
BstMBI GATC 3 cut(s) 910, 1059, 1337
BstMCI CGRYCG 3 cut(s) 373, 1062, 1224
BstNI CCWGG 4 cut(s) 129, 301, 527, 1386
BstNSI RCATGY 3 cut(s) 481, 692, 1249
BstPAI GACNNNNGTC 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 9 cut(s) 127, 171, 299, 327, 525, 1140, 1153, 1266, 1384
BstSFI CTRYAG 4 cut(s) 417, 468, 1407, 1467
BstSLI GKGCMC 3 cut(s) 1149, 1160, 1416
BstUI CGCG 4 cut(s) 414, 440, 1527, 1537
BstV1I GCAGC 4 cut(s) 266, 333, 454, 532
BstV2I GAAGAC 2 cut(s) 88, 351
BstXI CCANNNNNNTGG 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 1221
Bsu36I CCTNAGG 1 cut(s) 1346
BtgI CCRYGG 2 cut(s) 769, 1236
BtrI CACGTC 1 cut(s) 1201
BtsCI GGATG 3 cut(s) 30, 271, 1026
BtsIMutI CAGTG 4 cut(s) 186, 868, 972, 1416
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 7 cut(s) 247, 414, 690, 894, 1225, 1353, 1425
CaiI CAGNNNCTG 2 cut(s) 526, 974
CfoI GCGC 7 cut(s) 224, 414, 416, 440, 450, 1357, 1396
Cfr10I RCCGGY 2 cut(s) 245, 1223
Cfr13I GGNCC 6 cut(s) 176, 1156, 1157, 1282, 1342, 1369
CsiI ACCWGGT 1 cut(s) 525
Csp6I GTAC 3 cut(s) 286, 442, 666
CspCI CAANNNNNGTGG 2 cut(s) 1430, 1465
CviQI GTAC 3 cut(s) 286, 442, 666
DdeI CTNAG 7 cut(s) 339, 515, 752, 804, 881, 1302, 1346
DinI GGCGCC 1 cut(s) 449
DpnI GATC 3 cut(s) 912, 1061, 1339
DpnII GATC 3 cut(s) 910, 1059, 1337
DraIII CACNNNGTG 1 cut(s) 529
DrdI GACNNNNNNGTC 2 cut(s) 539, 1199
DseDI GACNNNNNNGTC 2 cut(s) 539, 1199
EaeI YGGCCR 5 cut(s) 243, 1182, 1221, 1233, 1269
EagI CGGCCG 1 cut(s) 1221
Eam1104I CTCTTC 5 cut(s) 14, 107, 485, 773, 1041
EarI CTCTTC 5 cut(s) 14, 107, 485, 773, 1041
EciI GGCGGA 1 cut(s) 1475
EclXI CGGCCG 1 cut(s) 1221
Eco130I CCWWGG 5 cut(s) 349, 769, 1035, 1236, 1286
Eco24I GRGCYC 2 cut(s) 1160, 1177
Eco47I GGWCC 3 cut(s) 176, 1282, 1342
Eco47III AGCGCT 2 cut(s) 223, 1395
Eco52I CGGCCG 1 cut(s) 1221
Eco57I CTGAAG 1 cut(s) 1100
Eco72I CACGTG 2 cut(s) 308, 1081
Eco81I CCTNAGG 1 cut(s) 1346
Eco88I CYCGRG 1 cut(s) 393
Eco91I GGTNACC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 1282
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 4 cut(s) 127, 299, 525, 1384
EcoT14I CCWWGG 5 cut(s) 349, 769, 1035, 1236, 1286
EcoT22I ATGCAT 1 cut(s) 163
EcoT38I GRGCYC 2 cut(s) 1160, 1177
EgeI GGCGCC 1 cut(s) 449
EheI GGCGCC 1 cut(s) 449
ErhI CCWWGG 5 cut(s) 349, 769, 1035, 1236, 1286
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 3 cut(s) 110, 189, 979
FauI CCCGC 1 cut(s) 1542
FblI GTMKAC 2 cut(s) 1203, 1470
Fnu4HI GCNGC 7 cut(s) 255, 322, 468, 521, 801, 1525, 1543
FokI GGATG 3 cut(s) 17, 278, 1013
FriOI GRGCYC 2 cut(s) 1160, 1177
Fsp4HI GCNGC 7 cut(s) 255, 322, 468, 521, 801, 1525, 1543
FspBI CTAG 5 cut(s) 293, 350, 723, 893, 1397
GlaI GCGC 7 cut(s) 223, 413, 415, 439, 449, 1356, 1395
GluI GCNGC 7 cut(s) 255, 322, 468, 521, 801, 1525, 1543
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 3 cut(s) 225, 451, 1397
HhaI GCGC 7 cut(s) 224, 414, 416, 440, 450, 1357, 1396
Hin1I GRCGYC 2 cut(s) 448, 1194
Hin6I GCGC 7 cut(s) 222, 412, 414, 438, 448, 1355, 1394
HinP1I GCGC 7 cut(s) 222, 412, 414, 438, 448, 1355, 1394
HincII GTYRAC 3 cut(s) 681, 1204, 1243
HindII GTYRAC 3 cut(s) 681, 1204, 1243
HinfI GANTC 5 cut(s) 276, 682, 923, 1069, 1088
Hpy188I TCNGA 9 cut(s) 211, 370, 615, 753, 870, 928, 1093, 1342, 1480
Hpy188III TCNNGA 2 cut(s) 544, 989
Hpy99I CGWCG 1 cut(s) 1205
HpyAV CCTTC 6 cut(s) 441, 503, 550, 649, 698, 1273
HpyCH4III ACNGT 4 cut(s) 290, 374, 976, 1411
HpyCH4IV ACGT 5 cut(s) 307, 677, 1080, 1194, 1200
HpyF3I CTNAG 7 cut(s) 339, 515, 752, 804, 881, 1302, 1346
HpySE526I ACGT 5 cut(s) 307, 677, 1080, 1194, 1200
Hsp92I GRCGYC 2 cut(s) 448, 1194
HspAI GCGC 7 cut(s) 222, 412, 414, 438, 448, 1355, 1394
KasI GGCGCC 1 cut(s) 447
KroI GCCGGC 2 cut(s) 245, 1223
KroNI GCCGGC 2 cut(s) 247, 1225
Kzo9I GATC 3 cut(s) 910, 1059, 1337
LguI GCTCTTC 1 cut(s) 1041
LmnI GCTCC 4 cut(s) 50, 433, 1143, 1462
Lsp1109I GCAGC 4 cut(s) 266, 333, 454, 532
LweI GCATC 1 cut(s) 256
MabI ACCWGGT 1 cut(s) 525
MaeI CTAG 5 cut(s) 293, 350, 723, 893, 1397
MaeII ACGT 5 cut(s) 307, 677, 1080, 1194, 1200
MaeIII GTNAC 4 cut(s) 149, 697, 788, 872
MalI GATC 3 cut(s) 912, 1061, 1339
MbiI CCGCTC 2 cut(s) 392, 1306
MboI GATC 3 cut(s) 910, 1059, 1337
MhlI GDGCHC 6 cut(s) 400, 1140, 1149, 1160, 1177, 1416
MluCI AATT 8 cut(s) 495, 624, 717, 730, 794, 828, 914, 1442
Mly113I GGCGCC 1 cut(s) 448
MlyI GAGTC 2 cut(s) 270, 676
MmeI TCCRAC 3 cut(s) 234, 393, 848
Mph1103I ATGCAT 1 cut(s) 163
MroNI GCCGGC 2 cut(s) 245, 1223
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 7 cut(s) 381, 716, 729, 810, 917, 1128, 1487
MspR9I CCNGG 9 cut(s) 129, 173, 301, 329, 527, 1142, 1155, 1268, 1386
MvaI CCWGG 4 cut(s) 129, 301, 527, 1386
MvnI CGCG 4 cut(s) 414, 440, 1527, 1537
NaeI GCCGGC 2 cut(s) 247, 1225
NarI GGCGCC 1 cut(s) 448
NciI CCSGG 5 cut(s) 173, 329, 1142, 1155, 1268
NcoI CCATGG 2 cut(s) 769, 1236
NdeII GATC 3 cut(s) 910, 1059, 1337
NgoMIV GCCGGC 2 cut(s) 245, 1223
NheI GCTAGC 1 cut(s) 892
NlaIV GGNNCC 7 cut(s) 177, 202, 298, 449, 1158, 1284, 1464
NmuCI GTSAC 3 cut(s) 697, 788, 872
NsiI ATGCAT 1 cut(s) 163
NspI RCATGY 3 cut(s) 481, 692, 1249
NspV TTCGAA 1 cut(s) 1100
PaeI GCATGC 1 cut(s) 692
PaeR7I CTCGAG 1 cut(s) 393
PaqCI CACCTGC 1 cut(s) 462
PauI GCGCGC 1 cut(s) 412
PciI ACATGT 2 cut(s) 477, 1245
PciSI GCTCTTC 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 3 cut(s) 1106, 1200, 1524
PdiI GCCGGC 2 cut(s) 247, 1225
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 923, 1069, 1088
PflFI GACNNNGTC 1 cut(s) 1208
PkrI GCNGC 7 cut(s) 256, 323, 469, 522, 802, 1526, 1544
Ple19I CGATCG 1 cut(s) 1062
PleI GAGTC 2 cut(s) 270, 676
PluTI GGCGCC 1 cut(s) 451
PmaCI CACGTG 2 cut(s) 308, 1081
PmlI CACGTG 2 cut(s) 308, 1081
PpsI GAGTC 2 cut(s) 270, 676
Ppu21I YACGTR 2 cut(s) 308, 1081
PpuMI RGGWCCY 1 cut(s) 1282
PscI ACATGT 2 cut(s) 477, 1245
PshAI GACNNNNGTC 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 1282
Psp6I CCWGG 4 cut(s) 127, 299, 525, 1384
PspCI CACGTG 2 cut(s) 308, 1081
PspEI GGTNACC 1 cut(s) 149
PspGI CCWGG 4 cut(s) 127, 299, 525, 1384
PspN4I GGNNCC 7 cut(s) 177, 202, 298, 449, 1158, 1284, 1464
PspOMI GGGCCC 1 cut(s) 1156
PspPI GGNCC 6 cut(s) 176, 1156, 1157, 1282, 1342, 1369
PspPPI RGGWCCY 1 cut(s) 1282
PspXI VCTCGAGB 1 cut(s) 393
PstI CTGCAG 1 cut(s) 472
PstNI CAGNNNCTG 2 cut(s) 526, 974
PsyI GACNNNGTC 1 cut(s) 1208
PteI GCGCGC 1 cut(s) 412
PvuI CGATCG 1 cut(s) 1062
RsaI GTAC 3 cut(s) 287, 443, 667
RsaNI GTAC 3 cut(s) 286, 442, 666
SalI GTCGAC 1 cut(s) 1202
SapI GCTCTTC 1 cut(s) 1041
SaqAI TTAA 7 cut(s) 381, 716, 729, 810, 917, 1128, 1487
SatI GCNGC 7 cut(s) 255, 322, 468, 521, 801, 1525, 1543
Sau3AI GATC 3 cut(s) 910, 1059, 1337
Sau96I GGNCC 6 cut(s) 176, 1156, 1157, 1282, 1342, 1369
ScaI AGTACT 1 cut(s) 667
SchI GAGTC 2 cut(s) 270, 676
ScrFI CCNGG 9 cut(s) 129, 173, 301, 329, 527, 1142, 1155, 1268, 1386
SduI GDGCHC 6 cut(s) 400, 1140, 1149, 1160, 1177, 1416
SexAI ACCWGGT 1 cut(s) 525
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 4 cut(s) 417, 468, 1407, 1467
SfoI GGCGCC 1 cut(s) 449
Sfr274I CTCGAG 1 cut(s) 393
SfuI TTCGAA 1 cut(s) 1100
SinI GGWCC 3 cut(s) 176, 1282, 1342
SlaI CTCGAG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
SphI GCATGC 1 cut(s) 692
Sse9I AATT 8 cut(s) 495, 624, 717, 730, 794, 828, 914, 1442
SsiI CCGC 8 cut(s) 154, 390, 800, 1306, 1460, 1525, 1535, 1542
SspDI GGCGCC 1 cut(s) 447
SspI AATATT 1 cut(s) 597
SspMI CTAG 5 cut(s) 293, 350, 723, 893, 1397
StyD4I CCNGG 9 cut(s) 127, 171, 299, 327, 525, 1140, 1153, 1266, 1384
StyI CCWWGG 5 cut(s) 349, 769, 1035, 1236, 1286
TaaI ACNGT 4 cut(s) 290, 374, 976, 1411
TaiI ACGT 5 cut(s) 310, 680, 1083, 1197, 1203
TaqI TCGA 6 cut(s) 394, 408, 961, 1100, 1203, 1328
TasI AATT 8 cut(s) 495, 624, 717, 730, 794, 828, 914, 1442
TatI WGTACW 2 cut(s) 285, 665
TauI GCSGC 3 cut(s) 803, 1527, 1545
TfiI GAWTC 3 cut(s) 923, 1069, 1088
Tru1I TTAA 7 cut(s) 381, 716, 729, 810, 917, 1128, 1487
Tru9I TTAA 7 cut(s) 381, 716, 729, 810, 917, 1128, 1487
TscAI CASTG 4 cut(s) 186, 868, 979, 1416
TseFI GTSAC 3 cut(s) 697, 788, 872
TseI GCWGC 4 cut(s) 254, 321, 467, 520
Tsp45I GTSAC 3 cut(s) 697, 788, 872
TspDTI ATGAA 3 cut(s) 17, 1300, 1520
TspRI CASTG 4 cut(s) 186, 868, 979, 1416
Tth111I GACNNNGTC 1 cut(s) 1208
VneI GTGCAC 2 cut(s) 1145, 1412
VpaK11BI GGWCC 3 cut(s) 176, 1282, 1342
XceI RCATGY 3 cut(s) 481, 692, 1249
XcmI CCANNNNNNNNNTGG 1 cut(s) 1167
XhoI CTCGAG 1 cut(s) 393
XmaJI CCTAGG 1 cut(s) 349
XmiI GTMKAC 2 cut(s) 1203, 1470
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 5 cut(s) 293, 350, 723, 893, 1397
ZraI GACGTC 1 cut(s) 1195
ZrmI AGTACT 1 cut(s) 667
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.