Rorug03G0061300

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000056
Physical Location & Seq
Reverse (-)
4572691 .. 4578623
5933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0061300.1

Sequence Viewer

Length: 1458 bp
ATGTTTGGTTCTGGTCACGGTACGGCATACCAGAGCAGTGGACTTCAAGGACCGATTTTAATTCCGACCCGGTTCGTCTGGCCTTATGGGGGAAGAAGGGTGTTTCTCAGTGGCTCTTTTACAAGGTGGTTAGAACATATACCTATGTCTCCAATGGAGGGGTGCCCAACTGCGTTTCAAGTTGTTTGGAACTTAACGCCTGGATATCACCAGTACAAGTTCTTGGTTGACGGAGAATGGCGACATAACGAGCAACTGCCTTTTGTCACTGGGAATTGTGGAATAGTGAATACCGTCTTTCTAACTGGGGAGCCAGATACAGTTCCTACTAGTTTCAGTCCCGAGACTTCTGACAGATCCAATATGGATGTAGATAACGAAGTCTTTACGCGTATGGAAGTAGCTCCAAGGATCTCAGCGGCTGAATTGGAGGTCTCTCGGCAGCGTATATCAGTATTTCTATCCACACATACTGCTTATGAGTTGCTTCCTGAGTCAGGCAAGGTCATTGCCTTGGATGTCAATTTACCTGTGAAAGAAGCATTCCATATCCTACATGAACAGGGAGTACCTGTGGCTCCTCTCTGGGATTTTGAAAAGGGACAATTTGTAGGAGTTCTTAGCGCATTGGATTTCATCTTAATATTGAGAGAGCTTGGGAATCATGGGTCAAATTTGACGGGGGAAGAGCTGGAGACTCATACTATAGCAGCATGGAAAGAGGGAAAATTAAATTTGAACAGACAACTTGATGGAAATGGGAGATGCTATCCACCACATTTGATCTCTGCCGGGCCTTATGATTCTCTCAAAGAAGTTGCTGTCAGAATTCTGCAAAACAAGGTGGCCACAGTTCCAATTCTTCATACTTCCTCAGAGGATGGTTCATTTCCACAGCTATTGCATCTTGCCTCCCTTTCGGGAATATTAAAATGCATATGCAGGCATTTCAGACATTCTTTAACCTCCTTGCCAATACTCCAACATCCTATTTCAGAATTCCCTATAGGTACATGGGTTCCAAATATTGGGGAGTCAAATGGAAGGCTGCTGGCTATGTTGAGACCAAATTCATCTCTTGCTGATGCCCTGTCTTTGTTGGTACAAGCTGAAGTTAGTTCAATACCCATAGTGGATGACAATGATTCGTTGCTGGATATTTATTCACGAAGTGATATTACTGCTTTGGCAAGAGACAAAGCTTATGCACAGATTCGCCTTGATCAATTGACTATCCATCAGACCTTGCAACTTGGGCAAAATGCAAATTCTCCTTATGGCTTCTTCAGTGGTCAGAGATGTCAGATGTGTTTGCGATCTGATCCTCTGCATAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTGAGGAGACTTGTGATTGTGGAGGCCGGAAGCAAGCGTGTAGAGGGCATCATTTCATTGAGTGATGTGTTCAGGTTCTTGCTAGGTTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

485

Amino Acids

53.72

Weight (kDa)

6.02

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPK1_CBM PF16561 21 - 101 4.2e-25 Glycogen recognition site of AMP-activated protein kinase
CBS PF00571 353 - 395 2.5e-06 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 1028
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 1 cut(s) 391
AciI CCGC 2 cut(s) 419, 1345
AclWI GGATC 3 cut(s) 351, 419, 1316
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 6 cut(s) 673, 733, 828, 998, 1069, 1267
AcuI CTGAAG 2 cut(s) 1131, 1270
AdeI CACNNNGTG 1 cut(s) 1172
AfaI GTAC 5 cut(s) 22, 215, 570, 1012, 1104
AfiI CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 5 cut(s) 47, 179, 596, 739, 1122
AhlI ACTAGT 1 cut(s) 329
AjnI CCWGG 2 cut(s) 199, 1357
AluBI AGCT 7 cut(s) 404, 655, 691, 898, 1109, 1202, 1454
AluI AGCT 7 cut(s) 404, 655, 691, 898, 1109, 1202, 1454
Alw26I GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
AlwI GGATC 3 cut(s) 351, 419, 1316
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 4 cut(s) 80, 794, 846, 1386
ApeKI GCWGC 3 cut(s) 442, 710, 1048
ApoI RAATTY 6 cut(s) 673, 733, 828, 998, 1069, 1267
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 2 cut(s) 50, 794
AsuC2I CCSGG 2 cut(s) 70, 793
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 167
BaeI ACNNNNGTAYC 2 cut(s) 1002, 1035
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 1162, 1194
BbvI GCAGC 3 cut(s) 454, 722, 1035
BccI CCATC 4 cut(s) 746, 875, 1245, 1333
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 201, 1359
BclI TGATCA 1 cut(s) 1222
BcnI CCSGG 2 cut(s) 70, 793
BcoDI GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
BcuI ACTAGT 1 cut(s) 329
BfaI CTAG 2 cut(s) 330, 1445
BfmI CTRYAG 2 cut(s) 705, 1005
BisI GCNGC 4 cut(s) 420, 443, 711, 1049
BlsI GCNGC 4 cut(s) 421, 444, 712, 1050
Bme1390I CCNGG 4 cut(s) 70, 201, 793, 1359
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 2 cut(s) 50, 794
BmiI GGNNCC 4 cut(s) 164, 312, 579, 1020
BmrFI CCNGG 4 cut(s) 70, 201, 793, 1359
BmrI ACTGGG 2 cut(s) 279, 315
BmsI GCATC 4 cut(s) 755, 913, 1075, 1419
BmuI ACTGGG 2 cut(s) 279, 315
BpmI CTGGAG 1 cut(s) 713
BpuMI CCSGG 2 cut(s) 70, 793
BsaI GGTCTC 2 cut(s) 439, 1057
BsaJI CCNNGG 2 cut(s) 407, 513
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
Bse1I ACTGG 3 cut(s) 211, 274, 310
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 201, 1359
BseDI CCNNGG 2 cut(s) 407, 513
BseGI GGATG 5 cut(s) 373, 523, 886, 985, 1141
BseLI CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 4 cut(s) 121, 429, 483, 888
BseNI ACTGG 3 cut(s) 211, 274, 310
BseRI GAGGAG 2 cut(s) 570, 1381
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 3 cut(s) 454, 722, 1035
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 4 cut(s) 82, 796, 848, 1388
BshNI GGYRCC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 3 cut(s) 70, 792, 1389
BslFI GGGAC 2 cut(s) 324, 615
BslI CCNNNNNNNGG 4 cut(s) 89, 158, 497, 1028
BsmAI GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
BsmFI GGGAC 2 cut(s) 324, 615
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 4 cut(s) 82, 796, 848, 1388
Bso31I GGTCTC 2 cut(s) 439, 1057
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
BspACI CCGC 2 cut(s) 419, 1345
BspANI GGCC 4 cut(s) 82, 796, 848, 1388
BspCNI CTCAG 4 cut(s) 120, 428, 484, 887
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 4 cut(s) 164, 312, 579, 1020
BspPI GGATC 3 cut(s) 351, 419, 1316
BspQI GCTCTTC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 162
BspTNI GGTCTC 2 cut(s) 439, 1057
BsrBI CCGCTC 1 cut(s) 1345
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 3 cut(s) 211, 274, 310
BssECI CCNNGG 2 cut(s) 407, 513
BssMI GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
BssT1I CCWWGG 2 cut(s) 407, 513
Bst2UI CCWGG 2 cut(s) 201, 1359
Bst4CI ACNGT 4 cut(s) 20, 295, 322, 853
Bst6I CTCTTC 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 944, 1053, 1397
BstDEI CTNAG 5 cut(s) 107, 415, 492, 620, 874
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 5 cut(s) 373, 523, 886, 985, 1141
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 6 cut(s) 359, 414, 786, 1225, 1319, 1324
BstMAI GTCTC 7 cut(s) 153, 338, 439, 689, 1057, 1188, 1363
BstMBI GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
BstMWI GCNNNNNNNGC 1 cut(s) 1255
BstNI CCWGG 2 cut(s) 201, 1359
BstSCI CCNGG 4 cut(s) 68, 199, 791, 1357
BstSFI CTRYAG 2 cut(s) 705, 1005
BstSLI GKGCMC 1 cut(s) 167
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 454, 722, 1035
BstX2I RGATCY 2 cut(s) 356, 411
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 2 cut(s) 356, 411
BsuRI GGCC 4 cut(s) 82, 796, 848, 1388
BtsCI GGATG 5 cut(s) 373, 523, 886, 985, 1141
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 4 cut(s) 43, 115, 267, 1294
Cac8I GCNNGC 3 cut(s) 944, 1053, 1397
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 626
Cfr13I GGNCC 2 cut(s) 50, 794
Csp6I GTAC 5 cut(s) 21, 214, 569, 1011, 1103
CspCI CAANNNNNGTGG 4 cut(s) 762, 797, 882, 917
CviAII CATG 4 cut(s) 557, 665, 714, 1014
CviQI GTAC 5 cut(s) 21, 214, 569, 1011, 1103
DdeI CTNAG 5 cut(s) 107, 415, 492, 620, 874
DpnI GATC 6 cut(s) 358, 413, 785, 1224, 1318, 1323
DpnII GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
DraIII CACNNNGTG 1 cut(s) 1172
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
Eco130I CCWWGG 2 cut(s) 407, 513
Eco31I GGTCTC 2 cut(s) 439, 1057
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 1131, 1270
Eco88I CYCGRG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoRI GAATTC 2 cut(s) 828, 998
EcoRII CCWGG 2 cut(s) 199, 1357
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 407, 513
EcoT22I ATGCAT 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 407, 513
FaeI CATG 4 cut(s) 560, 668, 717, 1017
FaqI GGGAC 2 cut(s) 324, 615
FatI CATG 4 cut(s) 556, 664, 713, 1013
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 1222
Fnu4HI GCNGC 4 cut(s) 420, 443, 711, 1049
FokI GGATG 5 cut(s) 380, 530, 893, 972, 1148
Fsp4HI GCNGC 4 cut(s) 420, 443, 711, 1049
FspBI CTAG 2 cut(s) 330, 1445
GlaI GCGC 1 cut(s) 625
GluI GCNGC 4 cut(s) 420, 443, 711, 1049
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 4 cut(s) 82, 796, 848, 1388
HapII CCGG 3 cut(s) 70, 792, 1389
HhaI GCGC 1 cut(s) 626
Hin1II CATG 4 cut(s) 560, 668, 717, 1017
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 1200
HinfI GANTC 8 cut(s) 494, 661, 697, 803, 1034, 1145, 1213, 1354
HpaII CCGG 3 cut(s) 70, 792, 1389
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 41, 229
Hpy188III TCNNGA 4 cut(s) 341, 491, 921, 1167
Hpy8I GTNNAC 2 cut(s) 41, 229
HpyAV CCTTC 2 cut(s) 90, 1038
HpyCH4III ACNGT 4 cut(s) 20, 295, 322, 853
HpyCH4V TGCA 8 cut(s) 835, 904, 936, 942, 1208, 1249, 1265, 1330
HpyF10VI GCNNNNNNNGC 1 cut(s) 1255
HpyF3I CTNAG 5 cut(s) 107, 415, 492, 620, 874
Hsp92II CATG 4 cut(s) 560, 668, 717, 1017
HspAI GCGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 1222
Kzo9I GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 4 cut(s) 310, 409, 583, 1342
Lsp1109I GCAGC 3 cut(s) 454, 722, 1035
LweI GCATC 4 cut(s) 755, 913, 1075, 1419
MaeI CTAG 2 cut(s) 330, 1445
MaeIII GTNAC 2 cut(s) 14, 265
MalI GATC 6 cut(s) 358, 413, 785, 1224, 1318, 1323
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
MboII GAAGA 4 cut(s) 105, 698, 854, 1276
MfeI CAATTG 1 cut(s) 1226
MflI RGATCY 2 cut(s) 356, 411
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 848
MluI ACGCGT 1 cut(s) 389
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 3 cut(s) 503, 691, 1043
MmeI TCCRAC 2 cut(s) 89, 1006
Mox20I TGGCCA 1 cut(s) 848
Mph1103I ATGCAT 1 cut(s) 938
MscI TGGCCA 1 cut(s) 848
MseI TTAA 6 cut(s) 59, 194, 641, 731, 929, 962
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 3 cut(s) 70, 792, 1389
MspR9I CCNGG 4 cut(s) 70, 201, 793, 1359
MunI CAATTG 1 cut(s) 1226
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 2 cut(s) 201, 1359
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 1255
NciI CCSGG 2 cut(s) 70, 793
NdeI CATATG 1 cut(s) 938
NdeII GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
NlaIII CATG 4 cut(s) 560, 668, 717, 1017
NlaIV GGNNCC 4 cut(s) 164, 312, 579, 1020
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 2 cut(s) 14, 265
NsiI ATGCAT 1 cut(s) 938
PciSI GCTCTTC 1 cut(s) 681
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 5 cut(s) 661, 803, 1145, 1213, 1354
PflMI CCANNNNNTGG 1 cut(s) 1028
PkrI GCNGC 4 cut(s) 421, 444, 712, 1050
PleI GAGTC 3 cut(s) 502, 691, 1042
PpsI GAGTC 3 cut(s) 502, 691, 1042
Psp6I CCWGG 2 cut(s) 199, 1357
PspGI CCWGG 2 cut(s) 199, 1357
PspN4I GGNNCC 4 cut(s) 164, 312, 579, 1020
PspPI GGNCC 2 cut(s) 50, 794
PsrI GAACNNNNNNTAC 2 cut(s) 552, 584
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 356, 411
RsaI GTAC 5 cut(s) 22, 215, 570, 1012, 1104
RsaNI GTAC 5 cut(s) 21, 214, 569, 1011, 1103
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 6 cut(s) 59, 194, 641, 731, 929, 962
SatI GCNGC 4 cut(s) 420, 443, 711, 1049
Sau3AI GATC 6 cut(s) 356, 411, 783, 1222, 1316, 1321
Sau96I GGNCC 2 cut(s) 50, 794
SchI GAGTC 3 cut(s) 503, 691, 1043
ScrFI CCNGG 4 cut(s) 70, 201, 793, 1359
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 4 cut(s) 755, 913, 1075, 1419
SfcI CTRYAG 2 cut(s) 705, 1005
SinI GGWCC 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 329
SsiI CCGC 2 cut(s) 419, 1345
SspI AATATT 3 cut(s) 645, 927, 1027
SspMI CTAG 2 cut(s) 330, 1445
StyD4I CCNGG 4 cut(s) 68, 199, 791, 1357
StyI CCWWGG 2 cut(s) 407, 513
TaaI ACNGT 4 cut(s) 20, 295, 322, 853
TaqII GACCGA 1 cut(s) 67
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 5 cut(s) 661, 803, 1145, 1213, 1354
Tru1I TTAA 6 cut(s) 59, 194, 641, 731, 929, 962
Tru9I TTAA 6 cut(s) 59, 194, 641, 731, 929, 962
TscAI CASTG 4 cut(s) 43, 115, 274, 1294
TseFI GTSAC 2 cut(s) 14, 265
TseI GCWGC 3 cut(s) 442, 710, 1048
Tsp45I GTSAC 2 cut(s) 14, 265
TspDTI ATGAA 6 cut(s) 573, 625, 854, 876, 1062, 1407
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 4 cut(s) 43, 115, 274, 1294
Van91I CCANNNNNTGG 1 cut(s) 1028
VpaK11BI GGWCC 1 cut(s) 50
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 6 cut(s) 673, 733, 828, 998, 1069, 1267
XspI CTAG 2 cut(s) 330, 1445
Zsp2I ATGCAT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.