Rorug02G0569000

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000056
Physical Location & Seq
Forward (+)
69442642 .. 69443952
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0569000.1

Sequence Viewer

Length: 1311 bp
ATGTATCTGGATGGTTTGAGTAAAAAGTACAGCGTGCTAGCACAGAACAATACGATTGAGCTCAAATTTGTCGAAACTCCAGAGTACTCTGCTCCAAAAGAAGTTTACAATACAGGTCGGTCAATGTGGATGAACAAGACCATCAACAAGAGCTACAATCTCACCTGGTCATTTCCTGTAGACTCTAACTTCTCCTACCTGGTTAGATTGCATTTTTGTGAGTTTGAGTCTGACATTACCAAGAGTGGAGAGAGGACATTTGTAATTTACTTGGCCAATCAAATTGCTGAACAAGGAGCAGACGTAATTCTATGGAGTGGTGGAAATGGGACTCCAACATACAGAGACTACATGTTGCTCATGCTTGGCCCCGGAAGCCAGAGAAAAGTTAATCTCTCTATTGCATTTCAAGCATTACGAACATATTGGTCGACTGAATATAGGGACGCAACATTGAATGGACTCGAAATCTTCAAGCTAATTGACCCAAAAGGCCAGCTCAGAACCAACCCCGACCCAAAGATGACACCTCATAGTAAGTCATTTCCTGTGCTTGCCCTCGTTGCTGGTGTAGGTTCCAGCATACTTGTGTTCTCTGTCCTCGGATACTTGGTTTTCAGAAAAAGATGGAAAGTCAAGGACTCTGGCTCCAGCAAGAGGAGAATGAAGTTTACAACGACCGCTGGATCCTCTTATCCGTGTCGCTACTTTTCACTGGCAGAGATCAAAGCCGCCACCAAAAACTTCAGTGATGCTTTTATCATTGGAGCTGGAGGATTTGGTAATGTATACAAAGGATGCATTGATGGTGGAGCCACTCCAGTTGCAATCAAACGGCTGAAACCAGAATCATCCCAAGGTGTCCATGAGTTTGAGACTGAAATTGAGATGCTCTCCCAACTCCGTCATCGCCATTTGGTTTCACTCATTGGATATTGTACTGATAAAGGAGAGATGATCTTAGTGTATGATTACATGGCACAAGGAACCCTCCGTGACCATCTCTACCACACTAATAACCCACCTCTTCCCTGGGAACAACGGCTTCAGATTTGTATTGGTGCAGCTCGAGGGTTGCAGTATCTTCATAGTGGTGCAAAGGGCACCATCATTCACCGAGATGTGAAGAGCACAAACATCTTATTGGATGACAAATGGGTGGCCAAGGTTTCAGATTTCGGGCTGTCCAAAGGCACAACAAACATGTCCAAAACCCACATCAGCACGATTGTGAAAGGGAGTTTTGGGTATCTGGATCCAGAATACTACCGACGACAACGTCTGACTGAGACGTCTACTCATTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

436

Amino Acids

49.15

Weight (kDa)

9.34

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 19 - 159 7.4e-12 Malectin-like domain
Malectin PF11721 29 - 117 1.7e-07 Malectin domain
Pkinase PF00069 254 - 430 3.1e-33 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 255 - 432 3e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1278, 1291
AatII GACGTC 1 cut(s) 1295
AccB1I GGYRCC 1 cut(s) 1103
AccI GTMKAC 4 cut(s) 180, 431, 789, 1295
AciI CCGC 2 cut(s) 681, 732
AclWI GGATC 4 cut(s) 681, 694, 1250, 1263
AcoI YGGCCR 2 cut(s) 273, 1161
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 730, 1031
AcyI GRCGYC 1 cut(s) 1292
AfaI GTAC 3 cut(s) 29, 86, 940
AfiI CCNNNNNNNGG 1 cut(s) 657
AflIII ACRYGT 2 cut(s) 351, 1203
AgsI TTSAA 3 cut(s) 410, 457, 475
AjnI CCWGG 3 cut(s) 164, 198, 1031
AleI CACNNNNGTG 1 cut(s) 1229
AluBI AGCT 6 cut(s) 61, 153, 478, 499, 770, 1067
AluI AGCT 6 cut(s) 61, 153, 478, 499, 770, 1067
Alw21I GWGCWC 2 cut(s) 63, 1133
Alw26I GTCTC 3 cut(s) 339, 869, 1283
AlwI GGATC 4 cut(s) 681, 694, 1250, 1263
Ama87I CYCGRG 1 cut(s) 1068
AoxI GGCC 4 cut(s) 273, 367, 493, 1161
ApeKI GCWGC 1 cut(s) 1064
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 154, 1106
AsuNHI GCTAGC 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 1068
BaeGI GKGCMC 1 cut(s) 1106
BalI TGGCCA 2 cut(s) 275, 1163
BamHI GGATCC 2 cut(s) 686, 1255
BanI GGYRCC 1 cut(s) 1103
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 63, 1133
BbvI GCAGC 1 cut(s) 1076
BccI CCATC 6 cut(s) 5, 149, 621, 800, 1008, 1115
BceAI ACGGC 2 cut(s) 851, 1058
BciT130I CCWGG 3 cut(s) 166, 200, 1033
BciVI GTATCC 1 cut(s) 599
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 3 cut(s) 339, 869, 1283
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 177
BfuI GTATCC 1 cut(s) 599
BisI GCNGC 2 cut(s) 732, 1065
BlsI GCNGC 2 cut(s) 733, 1066
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 4 cut(s) 166, 200, 372, 1033
BmeT110I CYCGRG 1 cut(s) 1068
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 8 cut(s) 370, 577, 649, 688, 814, 988, 1105, 1257
BmrFI CCNGG 4 cut(s) 166, 200, 372, 1033
BmsI GCATC 3 cut(s) 742, 788, 879
BmtI GCTAGC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 878, 910
BpmI CTGGAG 4 cut(s) 63, 634, 792, 804
BpuMI CCSGG 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 1292
BsaJI CCNNGG 6 cut(s) 370, 601, 856, 1031, 1032, 1164
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 657
Bse1I ACTGG 2 cut(s) 720, 821
BseBI CCWGG 3 cut(s) 166, 200, 1033
BseDI CCNNGG 6 cut(s) 370, 601, 856, 1031, 1032, 1164
BseGI GGATG 5 cut(s) 16, 135, 803, 851, 1153
BseLI CCNNNNNNNGG 1 cut(s) 657
BseMII CTCAG 2 cut(s) 514, 1278
BseNI ACTGG 2 cut(s) 720, 821
BseRI GAGGAG 1 cut(s) 673
BseSI GKGCMC 1 cut(s) 1106
BseXI GCAGC 1 cut(s) 1076
BsgI GTGCAG 1 cut(s) 1083
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 4 cut(s) 275, 369, 495, 1163
BshNI GGYRCC 1 cut(s) 1103
BsiEI CGRYCG 1 cut(s) 681
BsiHKAI GWGCWC 2 cut(s) 63, 1133
BsiHKCI CYCGRG 1 cut(s) 1068
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 2 cut(s) 343, 458
BslI CCNNNNNNNGG 1 cut(s) 657
BsmAI GTCTC 3 cut(s) 339, 869, 1283
BsmBI CGTCTC 1 cut(s) 1283
BsmFI GGGAC 2 cut(s) 343, 458
BsnI GGCC 4 cut(s) 275, 369, 495, 1163
BsoBI CYCGRG 1 cut(s) 1068
Bsp1286I GDGCHC 3 cut(s) 63, 1106, 1133
Bsp143I GATC 4 cut(s) 686, 723, 957, 1255
BspACI CCGC 2 cut(s) 681, 732
BspANI GGCC 4 cut(s) 275, 369, 495, 1163
BspCNI CTCAG 2 cut(s) 513, 1279
BspLI GGNNCC 8 cut(s) 370, 577, 649, 688, 814, 988, 1105, 1257
BspOI GCTAGC 1 cut(s) 41
BspPI GGATC 4 cut(s) 681, 694, 1250, 1263
BspQI GCTCTTC 1 cut(s) 1121
BspT107I GGYRCC 1 cut(s) 1103
BsrI ACTGG 2 cut(s) 720, 821
BssECI CCNNGG 6 cut(s) 370, 601, 856, 1031, 1032, 1164
BssMI GATC 4 cut(s) 686, 723, 957, 1255
BssNAI GTATAC 1 cut(s) 790
BssNI GRCGYC 1 cut(s) 1292
BssT1I CCWWGG 2 cut(s) 856, 1164
Bst1107I GTATAC 1 cut(s) 790
Bst2UI CCWGG 3 cut(s) 166, 200, 1033
Bst6I CTCTTC 2 cut(s) 1032, 1121
BstACI GRCGYC 1 cut(s) 1292
BstC8I GCNNGC 4 cut(s) 35, 39, 497, 555
BstDEI CTNAG 3 cut(s) 500, 961, 1287
BstF5I GGATG 5 cut(s) 16, 135, 803, 851, 1153
BstKTI GATC 4 cut(s) 689, 726, 960, 1258
BstMAI GTCTC 3 cut(s) 339, 869, 1283
BstMBI GATC 4 cut(s) 686, 723, 957, 1255
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 3 cut(s) 375, 410, 563
BstNI CCWGG 3 cut(s) 166, 200, 1033
BstNSI RCATGY 2 cut(s) 355, 1207
BstSCI CCNGG 4 cut(s) 164, 198, 370, 1031
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 1106
BstV1I GCAGC 1 cut(s) 1076
BstX2I RGATCY 2 cut(s) 686, 1255
BstYI RGATCY 2 cut(s) 686, 1255
BstZ17I GTATAC 1 cut(s) 790
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 4 cut(s) 275, 369, 495, 1163
BtgZI GCGATG 1 cut(s) 893
BtsCI GGATG 5 cut(s) 16, 135, 803, 851, 1153
BtsIMutI CAGTG 2 cut(s) 713, 754
Cac8I GCNNGC 4 cut(s) 35, 39, 497, 555
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 455
CsiI ACCWGGT 2 cut(s) 164, 198
Csp6I GTAC 3 cut(s) 28, 85, 939
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 5 cut(s) 352, 361, 866, 976, 1204
CviQI GTAC 3 cut(s) 28, 85, 939
DdeI CTNAG 3 cut(s) 500, 961, 1287
DpnI GATC 4 cut(s) 688, 725, 959, 1257
DpnII GATC 4 cut(s) 686, 723, 957, 1255
DrdI GACNNNNNNGTC 2 cut(s) 1278, 1291
DseDI GACNNNNNNGTC 2 cut(s) 1278, 1291
EaeI YGGCCR 2 cut(s) 273, 1161
Eam1104I CTCTTC 2 cut(s) 1032, 1121
EarI CTCTTC 2 cut(s) 1032, 1121
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 856, 1164
Eco24I GRGCYC 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 730, 1031
Eco88I CYCGRG 1 cut(s) 1068
EcoICRI GAGCTC 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 164, 198, 1031
EcoT14I CCWWGG 2 cut(s) 856, 1164
EcoT22I ATGCAT 1 cut(s) 803
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 856, 1164
Esp3I CGTCTC 1 cut(s) 1283
FaeI CATG 5 cut(s) 355, 364, 869, 979, 1207
FaqI GGGAC 2 cut(s) 343, 458
FatI CATG 5 cut(s) 351, 360, 865, 975, 1203
FblI GTMKAC 4 cut(s) 180, 431, 789, 1295
Fnu4HI GCNGC 2 cut(s) 732, 1065
FokI GGATG 5 cut(s) 23, 142, 810, 838, 1160
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 732, 1065
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 732, 1065
GsuI CTGGAG 4 cut(s) 63, 634, 792, 804
HaeIII GGCC 4 cut(s) 275, 369, 495, 1163
HapII CCGG 1 cut(s) 372
HgaI GACGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 1292
Hin1II CATG 5 cut(s) 355, 364, 869, 979, 1207
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 6 cut(s) 182, 227, 331, 462, 641, 848
HpaII CCGG 1 cut(s) 372
HphI GGTGA 2 cut(s) 154, 1106
Hpy166II GTNNAC 6 cut(s) 106, 181, 432, 672, 790, 1296
Hpy188I TCNGA 7 cut(s) 232, 503, 605, 620, 1050, 1174, 1284
Hpy188III TCNNGA 4 cut(s) 8, 80, 1253, 1259
Hpy8I GTNNAC 6 cut(s) 106, 181, 432, 672, 790, 1296
Hpy99I CGWCG 1 cut(s) 1275
HpyCH4IV ACGT 3 cut(s) 303, 1279, 1292
HpyCH4V TGCA 7 cut(s) 211, 404, 801, 827, 1064, 1078, 1097
HpyF10VI GCNNNNNNNGC 3 cut(s) 375, 410, 563
HpyF3I CTNAG 3 cut(s) 500, 961, 1287
HpySE526I ACGT 3 cut(s) 303, 1279, 1292
Hsp92I GRCGYC 1 cut(s) 1292
Hsp92II CATG 5 cut(s) 355, 364, 869, 979, 1207
Kzo9I GATC 4 cut(s) 686, 723, 957, 1255
LguI GCTCTTC 1 cut(s) 1121
LmnI GCTCC 5 cut(s) 97, 296, 653, 767, 812
Lsp1109I GCAGC 1 cut(s) 1076
LweI GCATC 3 cut(s) 742, 788, 879
MabI ACCWGGT 2 cut(s) 164, 198
MaeI CTAG 1 cut(s) 38
MaeII ACGT 3 cut(s) 303, 1279, 1292
MaeIII GTNAC 1 cut(s) 995
MalI GATC 4 cut(s) 688, 725, 959, 1257
MboI GATC 4 cut(s) 686, 723, 957, 1255
MboII GAAGA 4 cut(s) 463, 1019, 1076, 1138
MflI RGATCY 2 cut(s) 686, 1255
MhlI GDGCHC 3 cut(s) 63, 1106, 1133
MlsI TGGCCA 2 cut(s) 275, 1163
MluCI AATT 6 cut(s) 65, 264, 282, 306, 480, 882
MluNI TGGCCA 2 cut(s) 275, 1163
MlyI GAGTC 5 cut(s) 176, 236, 325, 456, 635
MmeI TCCRAC 1 cut(s) 359
Mox20I TGGCCA 2 cut(s) 275, 1163
Mph1103I ATGCAT 1 cut(s) 803
MscI TGGCCA 2 cut(s) 275, 1163
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 5 cut(s) 216, 587, 1092, 1119, 1229
Msp20I TGGCCA 2 cut(s) 275, 1163
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 4 cut(s) 166, 200, 372, 1033
MvaI CCWGG 3 cut(s) 166, 200, 1033
MwoI GCNNNNNNNGC 3 cut(s) 375, 410, 563
NciI CCSGG 1 cut(s) 372
NdeII GATC 4 cut(s) 686, 723, 957, 1255
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 5 cut(s) 355, 364, 869, 979, 1207
NlaIV GGNNCC 8 cut(s) 370, 577, 649, 688, 814, 988, 1105, 1257
NmuCI GTSAC 1 cut(s) 995
NsiI ATGCAT 1 cut(s) 803
NspI RCATGY 2 cut(s) 355, 1207
OliI CACNNNNGTG 1 cut(s) 1229
PaeR7I CTCGAG 1 cut(s) 1068
PasI CCCWGGG 1 cut(s) 1032
PciI ACATGT 2 cut(s) 351, 1203
PciSI GCTCTTC 1 cut(s) 1121
PfeI GAWTC 1 cut(s) 848
PflFI GACNNNGTC 1 cut(s) 1278
PkrI GCNGC 2 cut(s) 733, 1066
PleI GAGTC 5 cut(s) 176, 235, 325, 456, 635
PpsI GAGTC 5 cut(s) 176, 235, 325, 456, 635
PscI ACATGT 2 cut(s) 351, 1203
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 164, 198, 1031
PspGI CCWGG 3 cut(s) 164, 198, 1031
PspN4I GGNNCC 8 cut(s) 370, 577, 649, 688, 814, 988, 1105, 1257
PspPI GGNCC 1 cut(s) 368
PspXI VCTCGAGB 1 cut(s) 1068
PsuI RGATCY 2 cut(s) 686, 1255
PsyI GACNNNGTC 1 cut(s) 1278
RsaI GTAC 3 cut(s) 29, 86, 940
RsaNI GTAC 3 cut(s) 28, 85, 939
RseI CAYNNNNRTG 5 cut(s) 216, 587, 1092, 1119, 1229
SacI GAGCTC 1 cut(s) 63
SalI GTCGAC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 1121
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 732, 1065
Sau3AI GATC 4 cut(s) 686, 723, 957, 1255
Sau96I GGNCC 1 cut(s) 368
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 5 cut(s) 176, 236, 325, 456, 635
ScrFI CCNGG 4 cut(s) 166, 200, 372, 1033
SduI GDGCHC 3 cut(s) 63, 1106, 1133
SexAI ACCWGGT 2 cut(s) 164, 198
SfaNI GCATC 3 cut(s) 742, 788, 879
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 1068
SlaI CTCGAG 1 cut(s) 1068
SmiMI CAYNNNNRTG 5 cut(s) 216, 587, 1092, 1119, 1229
SmlI CTYRAG 1 cut(s) 1068
SmoI CTYRAG 1 cut(s) 1068
Sse9I AATT 6 cut(s) 65, 264, 282, 306, 480, 882
SsiI CCGC 2 cut(s) 681, 732
SspMI CTAG 1 cut(s) 38
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 4 cut(s) 164, 198, 370, 1031
StyI CCWWGG 2 cut(s) 856, 1164
TaiI ACGT 3 cut(s) 306, 1282, 1295
TaqI TCGA 4 cut(s) 72, 431, 465, 1069
TaqII GACCGA 1 cut(s) 108
TasI AATT 6 cut(s) 65, 264, 282, 306, 480, 882
TatI WGTACW 3 cut(s) 27, 84, 938
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 720, 754
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 1 cut(s) 1064
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 3 cut(s) 146, 680, 1076
TspGWI ACGGA 3 cut(s) 687, 893, 983
TspRI CASTG 2 cut(s) 720, 754
Tth111I GACNNNGTC 1 cut(s) 1278
XapI RAATTY 1 cut(s) 65
XceI RCATGY 2 cut(s) 355, 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 1029
XhoI CTCGAG 1 cut(s) 1068
XmiI GTMKAC 4 cut(s) 180, 431, 789, 1295
XspI CTAG 1 cut(s) 38
ZraI GACGTC 1 cut(s) 1293
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.