Rorug07G0265000

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000056
Physical Location & Seq
Reverse (-)
24958036 .. 24960489
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0265000.1

Sequence Viewer

Length: 951 bp
ATGGCAACTACAAAGAGCAAGGTTCTTGTTGTTGGTGGAACTGGTTACATGGGGAGAAGGATTGTCAAGGCAAGCCTAGCAGCAGGCCACCAGACTTATGTTCTGCAAAGGCCGGCGCCAGAGATCGGCCTCGACATTGAGAAGCTACAAATGCTCTTCTCGTTTAAGAAGCAAGGGGCTCACCTCGTCGAGGGTTCGTTTTCGGATTTCCAGAGCCTCGTCGACGCTGTCAAGCTAGTTGATGTTGTCATATGCACCATGTCGGGGACACATATCCGGAGTCACAACATTATGTTGCAGCTCAAGCTTGTTGAAGCCATTAAAGAAGCTGGAAATGTTAAGCGTTTCTTGCCATCAGAGTATGGCATGGACGTGGCACGTATGGGAAATGCTCTTGAACCAGGAAGAGTTCCGTTTGATGACAAAATGAAAGTGAGAAAAGCAATAGAAGATGCTAACATCCCCTTCACATATGTATGTGGTATTGGCTTCGCGGCTTATCATGCCGGCAACCTCTGCCAAATGGGAACACTGGTTCCTCCAAGGGATAAGGTGCTTATGTATGGAGATGGCAACCGCAAAGTGATACTTCTGGATGAGGATGACATTGCAACATACGCAATAAAAACGATTGATGATCCCCGAACATTAAACAAAACATTGCACCTTCGTCCGCCCGAGTGCATAGTCTCTCAAAGACAGTTGGTGGAGATCTGGGAAGGCCTTATTGGAAAGAAACTAGAAAAGGTTACCCTTTCCAAAGAAGACTTCCTTGCCTCTATGAAAGATATGGACTATGCAAATCAGGTTGGAGCAGGTCATTTCCATGACATGTACTATGAAGGTTGTTTGACAAACTTTGAAATAGGGGAAAATGCCGAAGAAGCTTCAAAGCTTTATCCCGAAGTGAAGTACACTCGCATGGATGAATTCTTGAAAATTTATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

316

Amino Acids

35.36

Weight (kDa)

6.47

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 4 - 312 2.8e-60 NmrA-like family
Epimerase PF01370 8 - 117 4.9e-07 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 12 - 160 1.4e-10 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74620
fragaria_vesca FvH4_1g17310 FvH4_1g21860 FvH4_2g00301 FvH4_2g00500 FvH4_2g00510 FvH4_2g01040 FvH4_2g01040 FvH4_2g01040 FvH4_2g01511 FvH4_2g01521 FvH4_2g05410 FvH4_2g15860 FvH4_2g16170 FvH4_2g20442 FvH4_3g22600 FvH4_4g03111 FvH4_4g31810 FvH4_4g31840 FvH4_4g33571 FvH4_4g33580 FvH4_4g33600 FvH4_4g33620 FvH4_4g33620 FvH4_5g04820 FvH4_5g04820 FvH4_5g04821 FvH4_5g04821 FvH4_5g04830 FvH4_5g04833 FvH4_5g04833 FvH4_5g04834 FvH4_5g05562 FvH4_5g06150 FvH4_5g07970 FvH4_5g09910 FvH4_5g11280 FvH4_5g12010 FvH4_6g06910 FvH4_6g11580 FvH4_6g15110 FvH4_6g24322 FvH4_6g31360 FvH4_6g34080 FvH4_6g44500 FvH4_6g47060 FvH4_6g50581 FvH4_6g50641 FvH4_6g50650 FvH4_6g50650 FvH4_6g50981 FvH4_6g51090 FvH4_6g51180 FvH4_6g51730 FvH4_6g51740 FvH4_6g51870 FvH4_6g52331 FvH4_6g52340 FvH4_6g52350 FvH4_6g52530 FvH4_6g52530
malus_domestica MD14G1195700.v1.1
prunus_persica Prupe.6G084800_v2.0.a1 Prupe.7G084100_v2.0.a1 Prupe.8G048800_v2.0.a1
pyrus_communis pycom17g01390
rosa_chinensis RchiOBHm_Chr0c11g0499451 RchiOBHm_Chr1g0314791 RchiOBHm_Chr1g0340221 RchiOBHm_Chr1g0362121 RchiOBHm_Chr1g0362131 RchiOBHm_Chr2g0107491 RchiOBHm_Chr2g0127721 RchiOBHm_Chr2g0143901 RchiOBHm_Chr2g0161531 RchiOBHm_Chr2g0169511 RchiOBHm_Chr2g0171151 RchiOBHm_Chr2g0171221 RchiOBHm_Chr2g0171251 RchiOBHm_Chr2g0171261 RchiOBHm_Chr2g0171341 RchiOBHm_Chr2g0171561 RchiOBHm_Chr2g0171591 RchiOBHm_Chr2g0171601 RchiOBHm_Chr2g0172411 RchiOBHm_Chr2g0172441 RchiOBHm_Chr2g0172771 RchiOBHm_Chr2g0172881 RchiOBHm_Chr2g0173201 RchiOBHm_Chr2g0173211 RchiOBHm_Chr2g0173941 RchiOBHm_Chr2g0173951 RchiOBHm_Chr2g0175281 RchiOBHm_Chr3g0463081 RchiOBHm_Chr3g0482941 RchiOBHm_Chr3g0486241 RchiOBHm_Chr3g0488151 RchiOBHm_Chr3g0488191 RchiOBHm_Chr3g0488271 RchiOBHm_Chr3g0488351 RchiOBHm_Chr3g0488411 RchiOBHm_Chr3g0488491 RchiOBHm_Chr4g0410881 RchiOBHm_Chr4g0440431 RchiOBHm_Chr4g0440501 RchiOBHm_Chr6g0269041 RchiOBHm_Chr7g0194201 RchiOBHm_Chr7g0194301 RchiOBHm_Chr7g0194311 RchiOBHm_Chr7g0194391 RchiOBHm_Chr7g0194401 RchiOBHm_Chr7g0236181
rosa_laevigata RLG00000004203 RLG00000006176 RLG00000022170 RLG00000022198 RLG00000022237 RLG00000022911
rosa_multiflora Rmu_co8086672.1_g000001 Rmu_co8091660.1_g000001 Rmu_co8325445.1_g000001 Rmu_co8482323.1_g000001 Rmu_sc0000239.1_g000034 Rmu_sc0000467.1_g000001 Rmu_sc0000766.1_g000038 Rmu_sc0000789.1_g000004 Rmu_sc0000831.1_g000055 Rmu_sc0000831.1_g000056 Rmu_sc0000831.1_g000057 Rmu_sc0000831.1_g000058 Rmu_sc0000831.1_g000059 Rmu_sc0000831.1_g000060 Rmu_sc0000901.1_g000011 Rmu_sc0000901.1_g000029 Rmu_sc0001513.1_g000006 Rmu_sc0001513.1_g000011 Rmu_sc0001576.1_g000034 Rmu_sc0001685.1_g000062 Rmu_sc0002784.1_g000036 Rmu_sc0003188.1_g000026 Rmu_sc0003188.1_g000027 Rmu_sc0003314.1_g000017 Rmu_sc0003548.1_g000019 Rmu_sc0003624.1_g000018 Rmu_sc0005193.1_g000015 Rmu_sc0006328.1_g000001 Rmu_sc0006328.1_g000005 Rmu_sc0006806.1_g000014 Rmu_sc0006806.1_g000028 Rmu_sc0007320.1_g000005 Rmu_sc0007493.1_g000003 Rmu_sc0007646.1_g000011 Rmu_sc0007648.1_g000001 Rmu_sc0007661.1_g000007 Rmu_sc0007684.1_g000008 Rmu_sc0007799.1_g000007 Rmu_sc0007841.1_g000004 Rmu_sc0008051.1_g000003 Rmu_sc0008124.1_g000008 Rmu_sc0009104.1_g000008 Rmu_sc0009433.1_g000012 Rmu_sc0009883.1_g000011 Rmu_sc0010744.1_g000003 Rmu_sc0011052.1_g000003 Rmu_sc0012403.1_g000008 Rmu_sc0013831.1_g000001 Rmu_sc0016754.1_g000004 Rmu_sc0022238.1_g000002 Rmu_sc0023157.1_g000001 Rmu_sc0023894.1_g000001 Rmu_sc0028130.1_g000001 Rmu_sc0040543.1_g000001 Rmu_ssc0000252.1_g000003 Rmu_ssc0000252.1_g000004 Rmu_ssc0000261.1_g000030 Rmu_ssc0000326.1_g000007
rosa_roxburghii Rroxscaffold_157G00438560 Rroxscaffold_2G00078410 Rroxscaffold_2G00078970 Rroxscaffold_2G00079030 Rroxscaffold_2G00079120 Rroxscaffold_2G00079340 Rroxscaffold_2G00079720 Rroxscaffold_2G00079870 Rroxscaffold_2G00079910 Rroxscaffold_2G00080570 Rroxscaffold_2G00080720 Rroxscaffold_2G00080770 Rroxscaffold_2G00080780 Rroxscaffold_2G00080850 Rroxscaffold_2G00080910 Rroxscaffold_2G00116750 Rroxscaffold_3G00261370 Rroxscaffold_3G00261500 Rroxscaffold_3G00266200 Rroxscaffold_4G00305290 Rroxscaffold_4G00311110 Rroxscaffold_4G00327720 Rroxscaffold_5G00381290 Rroxscaffold_5G00381320 Rroxscaffold_6G00394220 Rroxscaffold_6G00416970
rosa_rugosa Rorug01G0164800.1 Rorug01G0164900 Rorug01G0293800 Rorug01G0293900 Rorug01G0294200 Rorug02G0144400 Rorug02G0271300 Rorug02G0271400 Rorug02G0271400 Rorug02G0271500 Rorug02G0384900 Rorug02G0384900 Rorug02G0385000 Rorug02G0385100 Rorug02G0553000 Rorug02G0553100 Rorug02G0555000 Rorug02G0560000 Rorug02G0560100 Rorug02G0561500 Rorug02G0566500 Rorug02G0568800 Rorug02G0569000 Rorug02G0569400 Rorug02G0569700 Rorug02G0575200 Rorug02G0582300 Rorug03G0061300 Rorug03G0126300 Rorug03G0202400 Rorug03G0224200 Rorug03G0238200 Rorug03G0238300 Rorug03G0238400 Rorug03G0255100 Rorug03G0255100 Rorug04G0326000 Rorug04G0326200 Rorug04G0326300 Rorug06G0124000 Rorug07G0015300 Rorug07G0015700 Rorug07G0015700 Rorug07G0265000
rosa_samantha Rh1AG304100 Rh1AG304500 Rh1AG304600 Rh1CG166600 Rh1CG285500 Rh1DG218600 Rh2AG323600 Rh2AG611800 Rh2AG626100 Rh2AG626400 Rh2AG627700 Rh2AG629700 Rh2AG634400 Rh2AG634500 Rh2AG634800 Rh2AG652800 Rh2BG206800 Rh2BG636300 Rh2BG636400 Rh2BG637300 Rh2BG637400 Rh2BG642600 Rh2BG648000 Rh2BG648300 Rh2BG652700 Rh2BG664000 Rh2CG311300 Rh2CG604800 Rh2CG605400 Rh2CG606300 Rh2CG606800 Rh2CG623800 Rh2CG628700 Rh2DG201600 Rh2DG351100 Rh2DG648000 Rh2DG648100 Rh2DG648900 Rh2DG649000 Rh2DG649100 Rh2DG651000 Rh2DG654900 Rh2DG655100 Rh2DG655200 Rh2DG656700 Rh2DG656900 Rh2DG657100 Rh2DG662700 Rh2DG662900 Rh2DG666300 Rh2DG667000 Rh2DG670700 Rh2DG672100 Rh2DG673400 Rh2DG673600 Rh2DG675200 Rh2DG675300 Rh2DG675600 Rh2DG679000 Rh2DG679100 Rh3AG048000 Rh3AG048100 Rh3AG106800 Rh3AG119500 Rh3AG251300 Rh3AG285800 Rh3AG286700 Rh3AG287300 Rh3AG287400 Rh3CG049400 Rh3CG321600 Rh3DG320300 Rh4AG377300 Rh4AG377700 Rh4AG377900 Rh4DG159200 Rh7AG064400 Rh7AG097600 Rh7AG141500 Rh7AG142100 Rh7AG142200 Rh7AG142300 Rh7AG142600 Rh7AG142800 Rh7AG417800 Rh7AG424000 Rh7CG147100 Rh7DG143000 Rh7DG143900 Rh7DG144400 Rh7DG144700
rosa_wichuraiana Rw0G019520 Rw1G014950 Rw1G027080 Rw2G015390 Rw2G035650 Rw2G046060 Rw2G050780 Rw2G050810 Rw2G051810 Rw2G051850 Rw2G051940 Rw2G051990 Rw2G052000 Rw2G052130 Rw2G052140 Rw2G052530 Rw2G052760 Rw2G052830 Rw2G053180 Rw2G053330 Rw2G053630 Rw3G010110 Rw3G024300 Rw3G025400 Rw3G025450 Rw4G032320 Rw4G032440 Rw6G037400 Rw7G012180 Rw7G012220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 806
AccB1I GGYRCC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 494
AccIII TCCGGA 1 cut(s) 276
AciI CCGC 3 cut(s) 494, 577, 674
AclWI GGATC 1 cut(s) 632
AcsI RAATTY 2 cut(s) 929, 939
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 2 cut(s) 836, 914
AfiI CCNNNNNNNGG 3 cut(s) 125, 190, 264
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 5 cut(s) 314, 398, 863, 891, 937
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 4 cut(s) 711, 743, 752, 784
AloI GAACNNNNNNTCC 4 cut(s) 519, 520, 551, 552
AluBI AGCT 7 cut(s) 145, 235, 301, 307, 329, 887, 895
AluI AGCT 7 cut(s) 145, 235, 301, 307, 329, 887, 895
Alw26I GTCTC 1 cut(s) 694
AlwI GGATC 1 cut(s) 632
Ama87I CYCGRG 1 cut(s) 677
Aor13HI TCCGGA 1 cut(s) 276
AoxI GGCC 4 cut(s) 85, 110, 127, 721
ApeKI GCWGC 2 cut(s) 80, 298
ApoI RAATTY 2 cut(s) 929, 939
AspLEI GCGC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 677
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 2 cut(s) 92, 310
BccI CCATC 2 cut(s) 361, 563
BciT130I CCWGG 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 694
BfaI CTAG 3 cut(s) 77, 236, 740
BfoI RGCGCY 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 806
BglII AGATCT 1 cut(s) 711
BisI GCNGC 3 cut(s) 81, 299, 495
BlsI GCNGC 3 cut(s) 82, 300, 496
Bme1390I CCNGG 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 677
BmgBI CACGTC 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 117, 537
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 287
BsaAI YACGTR 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 542
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 190, 264
Bse118I RCCGGY 2 cut(s) 112, 506
Bse1I ACTGG 2 cut(s) 46, 537
Bse3DI GCAATG 2 cut(s) 606, 659
BseAI TCCGGA 1 cut(s) 276
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 4 cut(s) 459, 601, 607, 931
BseLI CCNNNNNNNGG 3 cut(s) 125, 190, 264
BseMI GCAATG 2 cut(s) 606, 659
BseNI ACTGG 2 cut(s) 46, 537
BseXI GCAGC 2 cut(s) 92, 310
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 4 cut(s) 87, 112, 129, 723
BshNI GGYRCC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 3 cut(s) 113, 277, 507
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 3 cut(s) 125, 190, 264
BsmAI GTCTC 1 cut(s) 694
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 4 cut(s) 87, 112, 129, 723
BsoBI CYCGRG 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 181
Bsp13I TCCGGA 1 cut(s) 276
Bsp143I GATC 3 cut(s) 123, 637, 711
BspACI CCGC 3 cut(s) 494, 577, 674
BspANI GGCC 4 cut(s) 87, 112, 129, 723
BspEI TCCGGA 1 cut(s) 276
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 2 cut(s) 117, 537
BspMI ACCTGC 1 cut(s) 806
BspPI GGATC 1 cut(s) 632
BspQI GCTCTTC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 115
BsrDI GCAATG 2 cut(s) 606, 659
BsrFI RCCGGY 2 cut(s) 112, 506
BsrI ACTGG 2 cut(s) 46, 537
BssAI RCCGGY 2 cut(s) 112, 506
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 3 cut(s) 123, 637, 711
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 702
Bst6I CTCTTC 2 cut(s) 161, 400
BstACI GRCGYC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 516
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 4 cut(s) 73, 85, 114, 508
BstEII GGTNACC 1 cut(s) 748
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 4 cut(s) 459, 601, 607, 931
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 3 cut(s) 126, 640, 714
BstMAI GTCTC 1 cut(s) 694
BstMBI GATC 3 cut(s) 123, 637, 711
BstMWI GCNNNNNNNGC 8 cut(s) 77, 151, 304, 349, 503, 516, 617, 884
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 835
BstPI GGTNACC 1 cut(s) 748
BstSCI CCNGG 1 cut(s) 400
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 92, 310
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 4 cut(s) 87, 112, 129, 723
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 4 cut(s) 459, 601, 607, 931
BtsIMutI CAGTG 1 cut(s) 530
BveI ACCTGC 1 cut(s) 806
Cac8I GCNNGC 4 cut(s) 73, 85, 114, 508
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 2 cut(s) 112, 506
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 835, 913
CviAII CATG 7 cut(s) 49, 259, 367, 503, 827, 832, 922
CviQI GTAC 2 cut(s) 835, 913
DinI GGCGCC 1 cut(s) 117
DpnI GATC 3 cut(s) 125, 639, 713
DpnII GATC 3 cut(s) 123, 637, 711
Eam1104I CTCTTC 2 cut(s) 161, 400
EarI CTCTTC 2 cut(s) 161, 400
EciI GGCGGA 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 677
Eco91I GGTNACC 1 cut(s) 748
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 7 cut(s) 52, 262, 370, 506, 830, 835, 925
FalI AAGNNNNNCTT 6 cut(s) 332, 364, 573, 605, 756, 788
FaqI GGGAC 1 cut(s) 280
FatI CATG 7 cut(s) 48, 258, 366, 502, 826, 831, 921
FauNDI CATATG 2 cut(s) 251, 472
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 81, 299, 495
FokI GGATG 4 cut(s) 446, 608, 614, 938
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 81, 299, 495
FspBI CTAG 3 cut(s) 77, 236, 740
GlaI GCGC 1 cut(s) 117
GluI GCNGC 3 cut(s) 81, 299, 495
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 4 cut(s) 87, 112, 129, 723
HapII CCGG 3 cut(s) 113, 277, 507
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 7 cut(s) 52, 262, 370, 506, 830, 835, 925
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 3 cut(s) 305, 885, 893
HinfI GANTC 1 cut(s) 280
HpaII CCGG 3 cut(s) 113, 277, 507
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 223, 915
Hpy188I TCNGA 2 cut(s) 205, 358
Hpy188III TCNNGA 6 cut(s) 211, 277, 395, 593, 902, 934
Hpy8I GTNNAC 2 cut(s) 223, 915
Hpy99I CGWCG 3 cut(s) 191, 224, 227
HpyAV CCTTC 5 cut(s) 51, 475, 677, 713, 836
HpyCH4III ACNGT 1 cut(s) 702
HpyCH4IV ACGT 2 cut(s) 372, 379
HpyCH4V TGCA 7 cut(s) 106, 255, 298, 611, 664, 684, 800
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 151, 304, 349, 503, 516, 617, 884
HpySE526I ACGT 2 cut(s) 372, 379
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 7 cut(s) 52, 262, 370, 506, 830, 835, 925
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 276
KroI GCCGGC 2 cut(s) 112, 506
KroNI GCCGGC 2 cut(s) 114, 508
Kzo9I GATC 3 cut(s) 123, 637, 711
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 1 cut(s) 812
Lsp1109I GCAGC 2 cut(s) 92, 310
LweI GCATC 1 cut(s) 442
MaeI CTAG 3 cut(s) 77, 236, 740
MaeII ACGT 2 cut(s) 372, 379
MaeIII GTNAC 3 cut(s) 44, 281, 748
MalI GATC 3 cut(s) 125, 639, 713
MboI GATC 3 cut(s) 123, 637, 711
MboII GAAGA 5 cut(s) 148, 417, 461, 776, 893
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 2 cut(s) 929, 939
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 790
MnlI CCTC 8 cut(s) 140, 184, 194, 227, 524, 549, 592, 787
MroI TCCGGA 1 cut(s) 276
MroNI GCCGGC 2 cut(s) 112, 506
MseI TTAA 5 cut(s) 165, 321, 339, 650, 949
MslI CAYNNNNRTG 4 cut(s) 371, 475, 825, 920
MspI CCGG 3 cut(s) 113, 277, 507
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 8 cut(s) 77, 151, 304, 349, 503, 516, 617, 884
NaeI GCCGGC 2 cut(s) 114, 508
NarI GGCGCC 1 cut(s) 116
NdeI CATATG 2 cut(s) 251, 472
NdeII GATC 3 cut(s) 123, 637, 711
NgoMIV GCCGGC 2 cut(s) 112, 506
NlaIII CATG 7 cut(s) 52, 262, 370, 506, 830, 835, 925
NlaIV GGNNCC 2 cut(s) 117, 537
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 835
PceI AGGCCT 1 cut(s) 723
PciI ACATGT 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 161
PdiI GCCGGC 2 cut(s) 114, 508
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 3 cut(s) 82, 300, 496
PleI GAGTC 1 cut(s) 288
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 380
PscI ACATGT 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 748
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 117, 537
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 2 cut(s) 836, 914
RsaNI GTAC 2 cut(s) 835, 913
RseI CAYNNNNRTG 4 cut(s) 371, 475, 825, 920
SalI GTCGAC 1 cut(s) 221
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 5 cut(s) 165, 321, 339, 650, 949
SatI GCNGC 3 cut(s) 81, 299, 495
Sau3AI GATC 3 cut(s) 123, 637, 711
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 1 cut(s) 181
SfaNI GCATC 1 cut(s) 442
SfoI GGCGCC 1 cut(s) 117
SgrDI CGTCGACG 1 cut(s) 221
SmiMI CAYNNNNRTG 4 cut(s) 371, 475, 825, 920
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 929, 939
SseBI AGGCCT 1 cut(s) 723
SsiI CCGC 3 cut(s) 494, 577, 674
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 3 cut(s) 77, 236, 740
StuI AGGCCT 1 cut(s) 723
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 1 cut(s) 702
TaiI ACGT 2 cut(s) 375, 382
TaqI TCGA 3 cut(s) 132, 189, 222
TasI AATT 2 cut(s) 929, 939
TatI WGTACW 2 cut(s) 834, 912
TauI GCSGC 1 cut(s) 497
Tru1I TTAA 5 cut(s) 165, 321, 339, 650, 949
Tru9I TTAA 5 cut(s) 165, 321, 339, 650, 949
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 2 cut(s) 80, 298
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 4 cut(s) 443, 797, 855, 942
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 1 cut(s) 537
Tth111I GACNNNGTC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 929, 939
XceI RCATGY 1 cut(s) 835
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 3 cut(s) 77, 236, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.