Rh2DG448800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
65073957 .. 65077529
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG448800.1

Sequence Viewer

Length: 534 bp
ATGAGCGAAGGTCCGAAGCTCTACACCAACAAACCCAAGAAAGCACACCTGAAACAGTTTCAAGATCAACAGATTTTTGCTTCAGCACCACCACCACCATCAACAATGCCCTCTTCTCAGTCCTCCACTCCGCCACCGCCACCGCCGCCGCCGCAGCTCCCCAAAGAGTCGTTTGCTCGCCGTTACAAGTTTCTCTGGCCTTTGCTCTTGACTGTCAATCTCGGCGTCGGAGCTTACTTGTTCATGCGGACGAAAAAGAAAGAGATAGATGTGGAGGAAGAAATTACTACTGCAGTTTCAACTGTTGCCCAAACAACTCCTACTACTGAGAAACCCCTACCCCTGCCAACCATCACAGAGCCTGTGAAATTGCGAGAACCAATCTCAGAGGATCAACAACGCGAAGTTTTCAAGTGGATTCTGGAAGAAAAAAGAAAGGTTAAACCAAAGGATCCTGAAGAGAAGAAGCAGATTGATGAGGAGAAAGCCCTTCTGAAACAGTTTATCAGAGCAAAATCTCTTCCAAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.25

Weight (kDa)

9.59

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010994)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 402
AciI CCGC 7 cut(s) 131, 137, 143, 146, 149, 152, 247
AclWI GGATC 3 cut(s) 399, 446, 459
AcuI CTGAAG 2 cut(s) 66, 477
AcyI GRCGYC 1 cut(s) 225
AgsI TTSAA 3 cut(s) 62, 300, 412
AluBI AGCT 3 cut(s) 19, 157, 233
AluI AGCT 3 cut(s) 19, 157, 233
AlwI GGATC 3 cut(s) 399, 446, 459
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 106, 359
BceAI ACGGC 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 4 cut(s) 146, 149, 152, 155
BlsI GCNGC 4 cut(s) 147, 150, 153, 156
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 225
BseMII CTCAG 3 cut(s) 131, 318, 399
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 402
BshFI GGCC 1 cut(s) 199
BsnI GGCC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 64, 391, 451
BspACI CCGC 7 cut(s) 131, 137, 143, 146, 149, 152, 247
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 3 cut(s) 130, 319, 398
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 453
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 3 cut(s) 399, 446, 459
BssMI GATC 3 cut(s) 64, 391, 451
BssNI GRCGYC 1 cut(s) 225
Bst4CI ACNGT 4 cut(s) 57, 214, 304, 501
Bst6I CTCTTC 3 cut(s) 118, 453, 525
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 117, 327, 385
BstFNI CGCG 1 cut(s) 402
BstKTI GATC 3 cut(s) 67, 394, 454
BstMBI GATC 3 cut(s) 64, 391, 451
BstMWI GCNNNNNNNGC 3 cut(s) 145, 151, 154
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 1 cut(s) 214
CviAII CATG 1 cut(s) 244
CviJI RGCY 6 cut(s) 19, 157, 199, 233, 361, 488
CviKI_1 RGCY 6 cut(s) 19, 157, 199, 233, 361, 488
DdeI CTNAG 3 cut(s) 117, 327, 385
DpnI GATC 3 cut(s) 66, 393, 453
DpnII GATC 3 cut(s) 64, 391, 451
Eam1104I CTCTTC 3 cut(s) 118, 453, 525
EarI CTCTTC 3 cut(s) 118, 453, 525
EciI GGCGGA 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 66, 477
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 146, 149, 152, 155
Fsp4HI GCNGC 4 cut(s) 146, 149, 152, 155
GluI GCNGC 4 cut(s) 146, 149, 152, 155
HaeIII GGCC 1 cut(s) 199
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 1 cut(s) 247
HinfI GANTC 3 cut(s) 167, 418, 528
Hpy188I TCNGA 5 cut(s) 15, 230, 388, 495, 509
Hpy188III TCNNGA 4 cut(s) 62, 208, 422, 455
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 4 cut(s) 57, 214, 304, 501
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 151, 154
HpyF3I CTNAG 3 cut(s) 117, 327, 385
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 3 cut(s) 64, 391, 451
LmnI GCTCC 2 cut(s) 162, 230
LpnPI CCDG 6 cut(s) 62, 181, 356, 375, 407, 468
Lsp1109I GCAGC 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 66, 393, 453
MboI GATC 3 cut(s) 64, 391, 451
MboII GAAGA 6 cut(s) 105, 290, 437, 470, 475, 512
MflI RGATCY 1 cut(s) 451
MluCI AATT 2 cut(s) 282, 368
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 5 cut(s) 121, 133, 268, 382, 472
MseI TTAA 1 cut(s) 441
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 3 cut(s) 145, 151, 154
NdeII GATC 3 cut(s) 64, 391, 451
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 453
NmeAIII GCCGAG 1 cut(s) 201
PfeI GAWTC 2 cut(s) 418, 528
PkrI GCNGC 4 cut(s) 147, 150, 153, 156
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 11
PstI CTGCAG 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 451
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 4 cut(s) 146, 149, 152, 155
Sau3AI GATC 3 cut(s) 64, 391, 451
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 176
SetI ASST 6 cut(s) 13, 21, 51, 159, 235, 441
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 11
Sse9I AATT 2 cut(s) 282, 368
SsiI CCGC 7 cut(s) 131, 137, 143, 146, 149, 152, 247
TaaI ACNGT 4 cut(s) 57, 214, 304, 501
TasI AATT 2 cut(s) 282, 368
TauI GCSGC 3 cut(s) 148, 151, 154
TfiI GAWTC 2 cut(s) 418, 528
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.