Rmu_sc0007929.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007929.1
OG0010994
Physical Location & Seq
Forward (+)
16109 .. 20207
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007929.1_g000004.1.cds

Sequence Viewer

Length: 732 bp
atggttgttgcttccaaatctcgtcgtttcgtcaatgggattcaatcactaatgattggcgtggtggttgctcgttcttcagcagacctcagaagaaggatgcagctcctcagtgtactggtggatccaaatcaaatttgggatcccagttcctggtactcagaggatttacacaagaccatacgagtagcagcgacgatgagcgaaggtccgaagctctacaccaacaaacccaagaaagcacacctgaaacagtttcaagatcaacagatttttgcttcagcaccaccaccaccatcaacaatgccctcttctcagtcctccactccaccaccaccgcctccgccgccgcagctccccaaagagtcgtttgctcgccgctacaagtttctctggcctttgctcttgactgtcaatctcggcgtcggagcttacttgttcatgcggacgaaaaagaaagagatagacgtggaggaagaagttactactgcagtttcaactgttgcccaaacaactcctactactgagaaacccctacccctgccaaccatcacagagcctgtgaaattgcgagaaccaatctcagaggatcaacaacgcgaagttttcaagtggattctggaagaaaaaagaaaggttaaaccaaaggatcctgaagagaagaagcagattgatgaggagaaagcccttctgaaacagtttatcagagcaaaatctcttccaagaatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.67

Weight (kDa)

9.8

Isoelectric Point (pI)

67.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55160 AT1G55160 AT1G55160
fragaria_vesca FvH4_6g33180
malus_domestica MD09G1194300.v1.1 MD17G1174800.v1.1
prunus_persica Prupe.3G050800_v2.0.a1
pyrus_communis pycom09g11080
rosa_chinensis RchiOBHm_Chr2g0142911
rosa_laevigata RLG00000019996
rosa_multiflora Rmu_sc0007929.1_g000004
rosa_roxburghii Rroxscaffold_2G00102230 Rroxscaffold_2G00103270
rosa_rugosa Rorug02G0376700 Rorug02G0385100
rosa_samantha Rh2AG429600 Rh2BG438700 Rh2CG415000 Rh2DG448800
rosa_wichuraiana Rw2G035110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 153
AccII CGCG 1 cut(s) 600
AciI CCGC 6 cut(s) 338, 344, 347, 350, 379, 445
AclWI GGATC 7 cut(s) 119, 132, 137, 150, 597, 644, 657
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 3 cut(s) 63, 264, 675
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 2 cut(s) 117, 158
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 4 cut(s) 44, 260, 498, 610
AjiI CACGTC 1 cut(s) 469
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 4 cut(s) 106, 217, 355, 431
AluI AGCT 4 cut(s) 106, 217, 355, 431
AlwI GGATC 7 cut(s) 119, 132, 137, 150, 597, 644, 657
AlwNI CAGNNNCTG 2 cut(s) 153, 560
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 3 cut(s) 103, 191, 352
ApoI RAATTY 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BamHI GGATCC 3 cut(s) 124, 142, 649
BbvI GCAGC 3 cut(s) 115, 203, 364
BccI CCATC 2 cut(s) 304, 557
BciT130I CCWGG 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 6 cut(s) 104, 192, 347, 350, 353, 379
BlsI GCNGC 6 cut(s) 105, 193, 348, 351, 354, 380
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 3 cut(s) 126, 144, 651
BmrFI CCNGG 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 123, 147
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 6 cut(s) 103, 124, 174, 329, 516, 597
BseNI ACTGG 2 cut(s) 123, 147
BseRI GAGGAG 2 cut(s) 98, 692
BseXI GCAGC 3 cut(s) 115, 203, 364
Bsh1236I CGCG 1 cut(s) 600
BshFI GGCC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 153
BsnI GGCC 1 cut(s) 397
Bsp143I GATC 5 cut(s) 124, 142, 262, 589, 649
BspACI CCGC 6 cut(s) 338, 344, 347, 350, 379, 445
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 6 cut(s) 102, 123, 173, 328, 517, 596
BspFNI CGCG 1 cut(s) 600
BspLI GGNNCC 3 cut(s) 126, 144, 651
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 7 cut(s) 119, 132, 137, 150, 597, 644, 657
BsrI ACTGG 2 cut(s) 123, 147
BssMI GATC 5 cut(s) 124, 142, 262, 589, 649
BssNI GRCGYC 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 4 cut(s) 255, 412, 502, 699
Bst6I CTCTTC 3 cut(s) 316, 651, 723
BstACI GRCGYC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 6 cut(s) 89, 110, 160, 315, 525, 583
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 600
BstKTI GATC 5 cut(s) 127, 145, 265, 592, 652
BstMBI GATC 5 cut(s) 124, 142, 262, 589, 649
BstMWI GCNNNNNNNGC 2 cut(s) 346, 352
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 3 cut(s) 115, 203, 364
BstX2I RGATCY 3 cut(s) 124, 142, 649
BstYI RGATCY 3 cut(s) 124, 142, 649
BsuRI GGCC 1 cut(s) 397
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 376
CaiI CAGNNNCTG 2 cut(s) 153, 560
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 116, 157
CviAII CATG 1 cut(s) 442
CviJI RGCY 7 cut(s) 106, 217, 355, 397, 431, 559, 686
CviKI_1 RGCY 7 cut(s) 106, 217, 355, 397, 431, 559, 686
CviQI GTAC 2 cut(s) 116, 157
DdeI CTNAG 6 cut(s) 89, 110, 160, 315, 525, 583
DpnI GATC 5 cut(s) 126, 144, 264, 591, 651
DpnII GATC 5 cut(s) 124, 142, 262, 589, 649
Eam1104I CTCTTC 3 cut(s) 316, 651, 723
EarI CTCTTC 3 cut(s) 316, 651, 723
EciI GGCGGA 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 3 cut(s) 63, 264, 675
EcoRII CCWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 445
FaiI YATR 2 cut(s) 182, 443
FatI CATG 1 cut(s) 441
Fnu4HI GCNGC 6 cut(s) 104, 192, 347, 350, 353, 379
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 6 cut(s) 104, 192, 347, 350, 353, 379
GluI GCNGC 6 cut(s) 104, 192, 347, 350, 353, 379
HaeIII GGCC 1 cut(s) 397
HgaI GACGC 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 1 cut(s) 445
HinfI GANTC 4 cut(s) 40, 365, 616, 726
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 7 cut(s) 92, 163, 213, 428, 586, 693, 707
Hpy188III TCNNGA 4 cut(s) 260, 406, 620, 653
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 3 cut(s) 27, 199, 428
HpyAV CCTTC 3 cut(s) 90, 200, 698
HpyCH4III ACNGT 4 cut(s) 255, 412, 502, 699
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 2 cut(s) 103, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 352
HpyF3I CTNAG 6 cut(s) 89, 110, 160, 315, 525, 583
HpySE526I ACGT 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 1 cut(s) 445
Kzo9I GATC 5 cut(s) 124, 142, 262, 589, 649
LmnI GCTCC 3 cut(s) 111, 360, 428
Lsp1109I GCAGC 3 cut(s) 115, 203, 364
LweI GCATC 1 cut(s) 90
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 481
MalI GATC 5 cut(s) 126, 144, 264, 591, 651
MboI GATC 5 cut(s) 124, 142, 262, 589, 649
MboII GAAGA 8 cut(s) 69, 105, 303, 488, 635, 668, 673, 710
MflI RGATCY 3 cut(s) 124, 142, 649
MluCI AATT 2 cut(s) 135, 566
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 9 cut(s) 98, 119, 157, 319, 331, 351, 466, 580, 670
MseI TTAA 1 cut(s) 639
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 2 cut(s) 346, 352
NdeII GATC 5 cut(s) 124, 142, 262, 589, 649
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 3 cut(s) 126, 144, 651
NmeAIII GCCGAG 1 cut(s) 399
PfeI GAWTC 3 cut(s) 40, 616, 726
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 6 cut(s) 105, 193, 348, 351, 354, 380
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 126, 144, 651
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 2 cut(s) 153, 560
PsuI RGATCY 3 cut(s) 124, 142, 649
RsaI GTAC 2 cut(s) 117, 158
RsaNI GTAC 2 cut(s) 116, 157
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 6 cut(s) 104, 192, 347, 350, 353, 379
Sau3AI GATC 5 cut(s) 124, 142, 262, 589, 649
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 154
SetI ASST 9 cut(s) 90, 108, 211, 219, 249, 357, 433, 471, 639
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 209
Sse9I AATT 2 cut(s) 135, 566
SsiI CCGC 6 cut(s) 338, 344, 347, 350, 379, 445
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 4 cut(s) 255, 412, 502, 699
TaiI ACGT 1 cut(s) 471
TasI AATT 2 cut(s) 135, 566
TatI WGTACW 1 cut(s) 115
TauI GCSGC 3 cut(s) 349, 352, 381
TfiI GAWTC 3 cut(s) 40, 616, 726
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 1 cut(s) 118
TseI GCWGC 3 cut(s) 103, 191, 352
TspDTI ATGAA 1 cut(s) 430
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.