pycom09g11080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010994
Physical Location & Seq
Forward (+)
9226972 .. 9236520
9549 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11080.1

Sequence Viewer

Length: 510 bp
ATGATAGAAGATGGTCCCAAGCTCTACGCCAACAAACCCAAGAAAGCGCAGCTGAAACAGTTTCAGGATCAGTCTTCGTCTCCGCCATCGTCATCGACAATGACGTCGGCTCAGTCTTCGTCTCCGCCGCCACCTCCGCCCCCGAAGGAGTCGTTTGCTCGACGTTACAAGTTTCTCTGGCCTCTGCTCTTGACTGTCAATCTGGGCGTTGGAGCTTACCTGTTTATGAGAACAAAGAAGAAAGACATAGAGGAAGACGCGACTACTACCGTTCCAACAACAGCTCAAACAACTCCTACTACCGAGAAACCCCTACCTTCACCAACCGTCACAGAGCCTGTGAAATTGCGGGAACCAATCCCGGAGGATCAACAACGCCAACTTTTCAAGTGGATGCTGGAAGAGAAAAGAAAGGTTAAACCAAAAGATCCTGAAGAGAAGAAGCGCCTTGATGAGGAGAAAGCCATTCTTAAACAGTTTATCCGGGCAAAATCCCTTCCAAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.27

Weight (kDa)

9.72

Isoelectric Point (pI)

80.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55160 AT1G55160 AT1G55160
fragaria_vesca FvH4_6g33180
malus_domestica MD09G1194300.v1.1 MD17G1174800.v1.1
prunus_persica Prupe.3G050800_v2.0.a1
pyrus_communis pycom09g11080
rosa_chinensis RchiOBHm_Chr2g0142911
rosa_laevigata RLG00000019996
rosa_multiflora Rmu_sc0007929.1_g000004
rosa_roxburghii Rroxscaffold_2G00102230 Rroxscaffold_2G00103270
rosa_rugosa Rorug02G0376700 Rorug02G0385100
rosa_samantha Rh2AG429600 Rh2BG438700 Rh2CG415000 Rh2DG448800
rosa_wichuraiana Rw2G035110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AatII GACGTC 1 cut(s) 107
AccII CGCG 1 cut(s) 260
AciI CCGC 5 cut(s) 83, 125, 128, 137, 349
AclWI GGATC 3 cut(s) 75, 375, 422
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 454
AgsI TTSAA 1 cut(s) 388
AluBI AGCT 4 cut(s) 22, 52, 215, 284
AluI AGCT 4 cut(s) 22, 52, 215, 284
Alw26I GTCTC 2 cut(s) 84, 126
AlwI GGATC 3 cut(s) 75, 375, 422
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 2 cut(s) 49, 447
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 362, 485
AsuHPI GGTGA 1 cut(s) 312
AvaII GGWCC 1 cut(s) 14
BbsI GAAGAC 3 cut(s) 66, 108, 261
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 5, 94
BcnI CCSGG 2 cut(s) 362, 485
BcoDI GTCTC 2 cut(s) 84, 126
BfoI RGCGCY 1 cut(s) 448
BisI GCNGC 2 cut(s) 50, 128
BlsI GCNGC 2 cut(s) 51, 129
Bme1390I CCNGG 2 cut(s) 362, 485
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 16, 354
BmrFI CCNGG 2 cut(s) 362, 485
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 3 cut(s) 66, 108, 261
BpuMI CCSGG 2 cut(s) 362, 485
BsaHI GRCGYC 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 454
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 362, 484
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 2 cut(s) 84, 126
BsmBI CGTCTC 2 cut(s) 84, 126
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 67, 367, 427
BspACI CCGC 5 cut(s) 83, 125, 128, 137, 349
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 16, 354
BspPI GGATC 3 cut(s) 75, 375, 422
BssMI GATC 3 cut(s) 67, 367, 427
BssNI GRCGYC 1 cut(s) 104
Bst4CI ACNGT 5 cut(s) 60, 196, 271, 328, 477
Bst6I CTCTTC 2 cut(s) 396, 429
BstACI GRCGYC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 399
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 2 cut(s) 49, 447
BstKTI GATC 3 cut(s) 70, 370, 430
BstMAI GTCTC 2 cut(s) 84, 126
BstMBI GATC 3 cut(s) 67, 367, 427
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 360, 483
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 3 cut(s) 66, 108, 261
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 338
CfoI GCGC 2 cut(s) 49, 447
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 266
CviJI RGCY 8 cut(s) 22, 52, 110, 181, 215, 284, 337, 464
CviKI_1 RGCY 8 cut(s) 22, 52, 110, 181, 215, 284, 337, 464
DdeI CTNAG 1 cut(s) 111
DpnI GATC 3 cut(s) 69, 369, 429
DpnII GATC 3 cut(s) 67, 367, 427
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 396, 429
EarI CTCTTC 2 cut(s) 396, 429
EciI GGCGGA 3 cut(s) 72, 114, 126
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 453
EcoNI CCTNNNNNAGG 1 cut(s) 452
Esp3I CGTCTC 2 cut(s) 84, 126
FaiI YATR 2 cut(s) 227, 248
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FauI CCCGC 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 50, 128
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 2 cut(s) 50, 128
GlaI GCGC 2 cut(s) 48, 446
GluI GCNGC 2 cut(s) 50, 128
HaeII RGCGCY 1 cut(s) 448
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 362, 484
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 49, 447
Hin1I GRCGYC 1 cut(s) 104
Hin6I GCGC 2 cut(s) 47, 445
HinP1I GCGC 2 cut(s) 47, 445
HinfI GANTC 1 cut(s) 149
HpaII CCGG 2 cut(s) 362, 484
HphI GGTGA 1 cut(s) 312
Hpy188III TCNNGA 3 cut(s) 65, 190, 431
Hpy99I CGWCG 2 cut(s) 109, 165
HpyAV CCTTC 3 cut(s) 139, 327, 506
HpyCH4III ACNGT 5 cut(s) 60, 196, 271, 328, 477
HpyCH4IV ACGT 2 cut(s) 104, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 2 cut(s) 104, 163
Hsp92I GRCGYC 1 cut(s) 104
HspAI GCGC 2 cut(s) 47, 445
Kzo9I GATC 3 cut(s) 67, 367, 427
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 9 cut(s) 50, 163, 188, 233, 351, 375, 383, 444, 497
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 384
MaeII ACGT 2 cut(s) 104, 163
MaeIII GTNAC 2 cut(s) 164, 328
MalI GATC 3 cut(s) 69, 369, 429
MboI GATC 3 cut(s) 67, 367, 427
MboII GAAGA 8 cut(s) 20, 66, 108, 250, 266, 413, 446, 451
MflI RGATCY 1 cut(s) 427
MluCI AATT 1 cut(s) 344
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 190, 299
MnlI CCTC 5 cut(s) 144, 192, 244, 358, 448
MseI TTAA 2 cut(s) 417, 471
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 2 cut(s) 362, 484
MspR9I CCNGG 2 cut(s) 362, 485
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 136
NciI CCSGG 2 cut(s) 362, 485
NdeII GATC 3 cut(s) 67, 367, 427
NlaIV GGNNCC 2 cut(s) 16, 354
NmuCI GTSAC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 360
PkrI GCNGC 2 cut(s) 51, 129
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspN4I GGNNCC 2 cut(s) 16, 354
PspPI GGNCC 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 52
SaqAI TTAA 2 cut(s) 417, 471
SatI GCNGC 2 cut(s) 50, 128
Sau3AI GATC 3 cut(s) 67, 367, 427
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 362, 485
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 1 cut(s) 14
Sse9I AATT 1 cut(s) 344
SsiI CCGC 5 cut(s) 83, 125, 128, 137, 349
StyD4I CCNGG 2 cut(s) 360, 483
TaaI ACNGT 5 cut(s) 60, 196, 271, 328, 477
TaiI ACGT 2 cut(s) 107, 166
TaqI TCGA 2 cut(s) 95, 160
TasI AATT 1 cut(s) 344
TauI GCSGC 1 cut(s) 130
Tru1I TTAA 2 cut(s) 417, 471
Tru9I TTAA 2 cut(s) 417, 471
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 14
XagI CCTNNNNNAGG 1 cut(s) 452
ZraI GACGTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.