AT1G55230

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013228
Physical Location & Seq
Forward (+)
20602819 .. 20604033
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55230.1

Sequence Viewer

Length: 903 bp
ATGGGAACACTTGTGGGACATGTTGCACCGGGTTTTGCCTTCTTTGCACTTGGTCTATGGCACTTATTTAACAACATAAAACTATTTTGTCTCAACCCAAACACCTTTACTTCATCACCATGGTTTCCAACTTCCAAGCTTAGACATTTAGAGCTCTACATAATCATGGTTTGTTCGTCAATCTCCATAGCCTCAGAGCTCTTCATTGGACCCAAGAAACATCAACCCTTTGACTCTGATGGTACCATCCCTTCAAACCACCTCCACAACTTTGAACACTCCTCTATCTCCATGTCATTCTTAGTCTACGCGATTTTCGCAGTAGTTCTTGATCAAGAAAGGCGTAGATCAAATATTTCGCATGGACTGACTATGCTCGTTGCATCTTCTGCCTTTGCTCAACAGCTCTTCCTTTTCCATCTTCACTCTGCCGACCACATGGGCATTGAGGGACAATACCATAAGCTCCTCCAGCTCATTATCTTCGTTTCTTTCCTCACCACTCTAATCGGTATCACTTTGCCTAAAAGTTTCTTGGTAAGCTTTGTGAGGTCATCAAGCATAACTTTCCAAGGAGTGTGGTTCGTAGTGATGGGTTACATGCTTTGGACACCTAGCTTGATTCCCAAGGGATGTTTTCTTCACGAAGAAGAAGGACACCAAGTGATTAAATGTTCCAGCGATAAAGCTATACACAGGGCCAAGTCGCTAGTCAACATCGAGTTTAGTTGGTTCTTTGTTGGAATCACAATTTTTGTAATGTCGCTATTCTTGATCCTAAGTGGGCTTTACGGTGAAAATGCCGAGTACTCAATTCTAGTCACTAAAGACAAAGGTGAAGAAAGTGGTGAAGAGAAACAAGACATAGAGTCGCTAAAGAAAAGTAAACCAAGTTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

300

Amino Acids

33.76

Weight (kDa)

6.95

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 122 - 257 2.2e-55 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013228)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55230
fragaria_vesca FvH4_3g44810
malus_domestica MD03G1010300.v1.1 MD03G1010400.v1.1 MD11G1012300.v1.1
prunus_persica Prupe.6G010200_v2.0.a1
pyrus_communis pycom03g00920 pycom11g00800
rosa_chinensis RchiOBHm_Chr5g0081481
rosa_laevigata RLG00000036942
rosa_multiflora Rmu_sc0001783.1_g000010
rosa_roxburghii Rroxscaffold_1G00002050
rosa_rugosa Rorug05G0476700
rosa_samantha Rh5AG528200 Rh5BG552800 Rh5CG575600 Rh5DG563000
rosa_wichuraiana Rw5G049130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 896
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 311
AclWI GGATC 1 cut(s) 769
AdeI CACNNNGTG 1 cut(s) 664
AfaI GTAC 2 cut(s) 244, 809
AfiI CCNNNNNNNGG 1 cut(s) 896
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 255, 275
AhdI GACNNNNNGTC 1 cut(s) 868
AluBI AGCT 9 cut(s) 139, 154, 199, 406, 466, 475, 543, 618, 689
AluI AGCT 9 cut(s) 139, 154, 199, 406, 466, 475, 543, 618, 689
Alw21I GWGCWC 2 cut(s) 156, 201
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 769
AoxI GGCC 1 cut(s) 699
Asp718I GGTACC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 209, 699
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 5 cut(s) 108, 490, 806, 848, 860
AvaII GGWCC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 2 cut(s) 156, 201
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
Bbv12I GWGCWC 2 cut(s) 156, 201
BccI CCATC 4 cut(s) 233, 254, 426, 586
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 3 cut(s) 615, 710, 818
BmcAI AGTACT 1 cut(s) 809
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 209
BmeRI GACNNNNNGTC 1 cut(s) 868
BmgT120I GGNCC 2 cut(s) 209, 699
BmiI GGNNCC 2 cut(s) 211, 244
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 392
BpmI CTGGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 119, 571, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 119, 571, 627
BseGI GGATG 2 cut(s) 246, 638
BseLI CCNNNNNNNGG 1 cut(s) 896
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 271, 458
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 701
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 156, 201
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 2 cut(s) 30, 465
BslI CCNNNNNNNGG 1 cut(s) 896
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 30, 465
BsnI GGCC 1 cut(s) 701
Bsp1286I GDGCHC 2 cut(s) 156, 201
Bsp143I GATC 3 cut(s) 331, 347, 774
Bsp19I CCATGG 1 cut(s) 119
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 1 cut(s) 206
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 2 cut(s) 211, 244
BspPI GGATC 1 cut(s) 769
BspQI GCTCTTC 2 cut(s) 206, 413
BspT107I GGYRCC 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 119, 571, 627
BssMI GATC 3 cut(s) 331, 347, 774
BssT1I CCWWGG 3 cut(s) 119, 571, 627
Bst4CI ACNGT 1 cut(s) 794
Bst6I CTCTTC 3 cut(s) 206, 413, 846
BstAPI GCANNNNNTGC 1 cut(s) 389
BstDEI CTNAG 4 cut(s) 140, 193, 301, 779
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 246, 638
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 3 cut(s) 334, 350, 777
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 331, 347, 774
BstMWI GCNNNNNNNGC 4 cut(s) 44, 317, 389, 472
BstNSI RCATGY 2 cut(s) 23, 604
BstSCI CCNGG 1 cut(s) 28
BstUI CGCG 1 cut(s) 311
BsuRI GGCC 1 cut(s) 701
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 246, 638
Cfr13I GGNCC 2 cut(s) 209, 699
Csp6I GTAC 2 cut(s) 243, 808
CspCI CAANNNNNGTGG 2 cut(s) 560, 595
CviAII CATG 7 cut(s) 20, 120, 166, 292, 362, 439, 601
CviQI GTAC 2 cut(s) 243, 808
DdeI CTNAG 4 cut(s) 140, 193, 301, 779
DpnI GATC 3 cut(s) 333, 349, 776
DpnII GATC 3 cut(s) 331, 347, 774
DraIII CACNNNGTG 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 868
Eam1104I CTCTTC 3 cut(s) 206, 413, 846
Eam1105I GACNNNNNGTC 1 cut(s) 868
EarI CTCTTC 3 cut(s) 206, 413, 846
Ecl136II GAGCTC 2 cut(s) 154, 199
Eco130I CCWWGG 3 cut(s) 119, 571, 627
Eco24I GRGCYC 2 cut(s) 156, 201
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 2 cut(s) 154, 199
EcoICRI GAGCTC 2 cut(s) 154, 199
EcoT14I CCWWGG 3 cut(s) 119, 571, 627
EcoT38I GRGCYC 2 cut(s) 156, 201
ErhI CCWWGG 3 cut(s) 119, 571, 627
FaeI CATG 7 cut(s) 23, 123, 169, 295, 365, 442, 604
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FaqI GGGAC 2 cut(s) 30, 465
FatI CATG 7 cut(s) 19, 119, 165, 291, 361, 438, 600
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 306
FokI GGATG 2 cut(s) 233, 645
FriOI GRGCYC 2 cut(s) 156, 201
FspBI CTAG 3 cut(s) 615, 710, 818
GsuI CTGGAG 1 cut(s) 455
HaeIII GGCC 1 cut(s) 701
HapII CCGG 1 cut(s) 29
Hin1II CATG 7 cut(s) 23, 123, 169, 295, 365, 442, 604
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 2 cut(s) 137, 541
HinfI GANTC 4 cut(s) 233, 622, 744, 869
HpaII CCGG 1 cut(s) 29
HphI GGTGA 5 cut(s) 108, 490, 806, 848, 860
Hpy166II GTNNAC 3 cut(s) 307, 715, 887
Hpy188I TCNGA 2 cut(s) 196, 238
Hpy188III TCNNGA 4 cut(s) 329, 335, 644, 772
Hpy8I GTNNAC 3 cut(s) 307, 715, 887
HpyAV CCTTC 3 cut(s) 49, 261, 647
HpyCH4III ACNGT 1 cut(s) 794
HpyCH4V TGCA 3 cut(s) 26, 47, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 317, 389, 472
HpyF3I CTNAG 4 cut(s) 140, 193, 301, 779
Hsp92II CATG 7 cut(s) 23, 123, 169, 295, 365, 442, 604
KpnI GGTACC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 331, 347, 774
LguI GCTCTTC 2 cut(s) 206, 413
LmnI GCTCC 1 cut(s) 471
LpnPI CCDG 4 cut(s) 42, 485, 682, 691
LweI GCATC 1 cut(s) 392
MaeI CTAG 3 cut(s) 615, 710, 818
MaeIII GTNAC 2 cut(s) 596, 820
MalI GATC 3 cut(s) 333, 349, 776
MboI GATC 3 cut(s) 331, 347, 774
MhlI GDGCHC 2 cut(s) 156, 201
MluCI AATT 2 cut(s) 750, 813
MlyI GAGTC 2 cut(s) 227, 878
MmeI TCCRAC 2 cut(s) 152, 721
MnlI CCTC 7 cut(s) 202, 272, 292, 442, 479, 506, 543
MseI TTAA 2 cut(s) 69, 669
MslI CAYNNNNRTG 2 cut(s) 118, 164
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 4 cut(s) 44, 317, 389, 472
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 119
NdeII GATC 3 cut(s) 331, 347, 774
NlaIII CATG 7 cut(s) 23, 123, 169, 295, 365, 442, 604
NlaIV GGNNCC 2 cut(s) 211, 244
NmeAIII GCCGAG 1 cut(s) 829
NmuCI GTSAC 1 cut(s) 820
NspI RCATGY 2 cut(s) 23, 604
PciI ACATGT 1 cut(s) 19
PciSI GCTCTTC 2 cut(s) 206, 413
PfeI GAWTC 2 cut(s) 622, 744
PflMI CCANNNNNTGG 1 cut(s) 896
PleI GAGTC 2 cut(s) 227, 877
PpsI GAGTC 2 cut(s) 227, 877
PscI ACATGT 1 cut(s) 19
Psp124BI GAGCTC 2 cut(s) 156, 201
PspN4I GGNNCC 2 cut(s) 211, 244
PspPI GGNCC 2 cut(s) 209, 699
RsaI GTAC 2 cut(s) 244, 809
RsaNI GTAC 2 cut(s) 243, 808
RseI CAYNNNNRTG 2 cut(s) 118, 164
SacI GAGCTC 2 cut(s) 156, 201
SapI GCTCTTC 2 cut(s) 206, 413
SaqAI TTAA 2 cut(s) 69, 669
Sau3AI GATC 3 cut(s) 331, 347, 774
Sau96I GGNCC 2 cut(s) 209, 699
ScaI AGTACT 1 cut(s) 809
SchI GAGTC 2 cut(s) 227, 878
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 156, 201
SfaNI GCATC 1 cut(s) 392
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 118, 164
Sse9I AATT 2 cut(s) 750, 813
SspI AATATT 1 cut(s) 355
SspMI CTAG 3 cut(s) 615, 710, 818
SstI GAGCTC 2 cut(s) 156, 201
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 3 cut(s) 119, 571, 627
TaaI ACNGT 1 cut(s) 794
TaqI TCGA 1 cut(s) 720
TasI AATT 2 cut(s) 750, 813
TatI WGTACW 1 cut(s) 807
TfiI GAWTC 2 cut(s) 622, 744
Tru1I TTAA 2 cut(s) 69, 669
Tru9I TTAA 2 cut(s) 69, 669
TseFI GTSAC 1 cut(s) 820
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 2 cut(s) 102, 193
Van91I CCANNNNNTGG 1 cut(s) 896
VpaK11BI GGWCC 1 cut(s) 209
XceI RCATGY 2 cut(s) 23, 604
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 3 cut(s) 615, 710, 818
ZrmI AGTACT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.