Rorug05G0476700

Family of unknown function (DUF716)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
65632112 .. 65632501
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0476700.1

Sequence Viewer

Length: 390 bp
ATGCTTCACTCGCGTCCTCTGCCTTCTGTTATCATTTTCAATCAAATCTTGACTCAACTTTCCAAATTGAAACGATCTTCAGCAGTCATCTCTTTGAATACACAAATGGGTCTGCTGGGAATTGCTCCTGATCACTATACTCTTAACATTATCATTAACTGCTATTGCCATTTGAACCAAATGGGGTTTAGCTTATCTGTCTTGGCACAATTCTTCAAATTGGGTCTTCAACCAGGCGTCACCACCTTCAACACTCTAATCAACGGCTTTGTTCTCGAGAAGCAACTGGCTGAAGCAGCACGAATTTTCAGCAAAATGGTGGAGGGAGGTCATTGTAAGCCGGATGTGTTTACTTTTAACACTGATAAAGGGCTTTTGCATGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.26

Weight (kDa)

8.91

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 8 - 57 4.7e-08 PPR repeat family
PPR_3 PF13812 70 - 120 6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 75 - 107 1.3e-06 PPR repeat
PPR_2 PF13041 78 - 121 4.8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013228)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 2 cut(s) 63, 312
AcyI GRCGYC 1 cut(s) 237
AgsI TTSAA 7 cut(s) 40, 70, 97, 175, 217, 230, 250
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
Ama87I CYCGRG 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 308
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 130
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 2 cut(s) 74, 130
BspFNI CGCG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 291
BssMI GATC 2 cut(s) 74, 130
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 237
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 2 cut(s) 77, 133
BstMBI GATC 2 cut(s) 74, 130
BstMWI GCNNNNNNNGC 3 cut(s) 10, 19, 296
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 360
CseI GACGC 2 cut(s) 2, 226
CviAII CATG 1 cut(s) 380
CviJI RGCY 5 cut(s) 192, 267, 290, 340, 373
CviKI_1 RGCY 5 cut(s) 192, 267, 290, 340, 373
DpnI GATC 2 cut(s) 76, 132
DpnII GATC 2 cut(s) 74, 130
Eco57I CTGAAG 2 cut(s) 63, 312
Eco88I CYCGRG 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 383
FaiI YATR 2 cut(s) 138, 381
FatI CATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
GsaI CCCAGC 1 cut(s) 119
HapII CCGG 1 cut(s) 341
HgaI GACGC 2 cut(s) 2, 226
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 383
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 351
Hpy188III TCNNGA 4 cut(s) 49, 128, 275, 277
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 33, 256
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 19, 296
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 74, 130
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 101, 141, 219, 246, 272, 354
Lsp1109I GCAGC 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 76, 132
MboI GATC 2 cut(s) 74, 130
MboII GAAGA 3 cut(s) 69, 205, 218
MluCI AATT 5 cut(s) 65, 120, 209, 218, 303
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 3 cut(s) 27, 316, 320
MseI TTAA 3 cut(s) 144, 156, 357
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 10, 19, 296
NdeII GATC 2 cut(s) 74, 130
NlaIII CATG 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 275
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 1 cut(s) 232
SaqAI TTAA 3 cut(s) 144, 156, 357
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 74, 130
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 234
SetI ASST 3 cut(s) 194, 248, 331
Sfr274I CTCGAG 1 cut(s) 275
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 5 cut(s) 65, 120, 209, 218, 303
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 1 cut(s) 276
TasI AATT 5 cut(s) 65, 120, 209, 218, 303
Tru1I TTAA 3 cut(s) 144, 156, 357
Tru9I TTAA 3 cut(s) 144, 156, 357
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 238
TspRI CASTG 1 cut(s) 367
XapI RAATTY 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.