AT1G55540

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20734446 .. 20743188
8743 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55540.1

Sequence Viewer

Length: 5451 bp
ATGAGCAGAGTTGAGATTGAAGAAGATACGGAAGGAGATCGCATCTCAACGAACGATTACTACTTCGAGAGAATCGGCGAACCTATCAGTATCAAAGAAGATGATGCTCAATACGATCTCGAAAACCCTCCGTCACAGCCTCTCGCTATCTCAGAACGCCACGCCGTCCTCTTTGTCGCACATTCCTCCGGGTTTTTTGTTGGGAGGACTAATGATGTAATTTCTGCATCGAAGAACAGTAACGGGAACGGTGATAAGGTTTTTATCCAGGATTTGAGCCTCGTCGATGTTCCTGTTGGGGACGTTCGTATATTGTCTCTCTCAGCGGATGATTCGATTCTCGCTGTCACCGTTGCTGCTGATATTCATTTCTTCTCTGTGGATTCACTTCTTAAGAAGGATGCAAAACCTTCTTTTTCTTATTCACCTGATGAGTCAGGCTTCGTTAAGGATTTTCGGTGGAGAAGGAATGATAAGCATTCTTATCTTGTTCTTTCGAATACTGGGAAGCTCTTTCATGGAATTGATAATGCACCCCCTAGACATGTTATGGATGCTGTTGACGCCGTTGAATGGAGTTCAAAAGGGAGTTATATCGCTGTAGCTCAAGATAACAGCCTTCGGATTTTTTCGTCAAAATTTAATGAGAAGCGGTGCATAGCACTATCATTTGACTCTTGGATTGGTGATTCCGATGAAGACTGTTTCGTGAAAGTTGATTCTATCAGATGGGTACGCAACAACTGTATTCTTCTTGGATGCTTTCAGCTGATTGAAGGCAGGGAAGAAAATTACCTTGTTCAGGTTATCAGGAGTCCAGATGGGAAGATTTCTGATGGTTCAACCAATCTGGTTGCTTTATCCTTCTCCGATTTGTTTCCATGTTCTATGGATGATCTTGTCCCGGTCGGTGTTGGACCTCATTTACTCTTTAGCTACATAGACCAATGCAAACTGGCGGTCACAGCAAACAGAAAGAGCATAGATGAGCATATTGTTTTACTGGATTGGTCATCTGGTGATGATAAAAGTGCAGTTTCCGTTGTTGATATTGATCGTGAGACCTTTTTGCCAAGGATTGGGCTCCAAGAAAACAACGATGACAATACGGTCATGGGACTCTGTATCGATAGGGTTTCTATAGAGGGGACTGTTAATGTCCGTTCCGGAGATGATGAACTTAAAGAACTTCAACCATATTTTGTTCTTGTGTGCCTCACTTTGGAAGGGAAGCTGGTCATGTTTAATGTTGCTAGTGTTGCAGGACGGCCAGCTTCATCTGATACTGATTTGGCCTCTTCTTCTGATATAGAAGATGCTTATACCCCTTTGATTGAAGATGACCTTTCTAAACAATCTTCTGAAAAACATCAACAGTTGAATATTGCAGTACAAAATGATCAGAAACACCTCAACACAGAGAAGTTCTCTACTGAACAAAGGTTGCCAAATGAAAACATTTTTAGCAAGGAATTCGAGTCTGTGAAAAGCTCAGTGTCTGGGGACAACAACAAGAAGCAAGAACCGTATGCTGAAAAACCGTTACAAGTTGAAGATGCTCAACAAAGCATGATTCCTAGGTTGTCCGGAACAAGTTTTGGGCAACTACCCATGTCCTTAGGATATGACACCAACAAATTTGCAGGATTCGGTCCTGCTCTCCCTGTTTCCGAAAAGCTTCAAAAAGACATATTTGCGCAGTCCAATTCTATGCATTTGCAGGCCAATGTGGAGTCAAAGAGTACAGCAGCTTTTTTTGGATCTCCTGGCCTGCAGAACGCAATTTTGCAGTCACCGCAAAATACGTCATCTCAGCCATGGTCAAGTGGGAAAAGCGTCTCACCTCCAGATTTTGTATCTGGTCCCTTTCCTTCTATGAGAGATACTCAGCATAAGCAATCTGTACAGTCTGGAACTGGTTATGTAAACCCTCCTATGAGCATCAAAGATAAATCTGTACAAGTTATTGAGACTGGTAGAGTATCAGCGCTGAGCAATTTAAGTCCTCTGCTAGGCCAAAATCAGGACACTAATGAAGGGGTAGAGAAAATTGAGCCAATACCTTCTATCCGTGCCTCTCAATTGTCACAACAGGTGAAATCTTCCTTCGAAAAATCAGCCAGTCATCAGCAGCACAAAACTCCGCTCAGTACTGGACCTCTGAGACTTGAGCATAACATGTCAAACCAACCCAGTAATATAAATGAGATGGCCCGAGAAATGGATACACTTTTACAGTCCATTGAAGGACCGGGTGGTTTCAAGGATTCTTGCGCGTTTATACTGAAAAGCAATGTTGAAGAACTGGAGCAAGGACTTGAAAGTCTTGCTGGCAAGTGCCAAACGTGGAAGAGCACAATTCACGAGCAGCAAGCAGAGATCCAACATCTTCTTGACAAAACAATTCAAGTTTTGGCAAAAAAGACATACATGGAAGGTATGTATAAGCAAACTGCTGATAACCAGTACTGGCAACTTTGGAACCGCCAGAAGTTGAATCCTGAGCTTGAGGCCAAGCGGCAGCATATAATGAAACTAAATAAGGATTTGACTCATCAACTGATTGAACTAGAGAGATATTTTAATCGGCTTGAACTCGATCGCTACAATGAGGATGGTGGACATCCTGTGGCACGAAGAGGCGTGCCAAATAGGTCTGCTCCTTCAAGACGTGTGCAATCCCTTCACAGCCTTCATAACACAATGAGTTCCCAATTGGCTGCTGCTGAGCAACTCTCTGAGTGTCTCTCAAAACAAATGACATATTTGAAAATCGATTCACCTGTAAAAAAGAATGTGAAGCAGGAGTTGTTCGAGACAATTGGGATCCCTTACGATGCTTCTTTCAGCTCACCAGATGCGGTAAAAGCTAAAAATGCATCTTCAGCAAAAAACCTATTACTCTCTTCTATCCCCGCAAGTATAAATCAACAGTCAAGACAACGTCAGTCATCTGCTATGAAAAATTCTGACCCTGAAACTGCTAGGAGGAGAAGAGAATCACTAGACAGGAATTGGGCTGCTTTTGAGCCTCCAAAAACAACTGTCAAAAGGATGCTTCTGCAGGAGCAACAGAAGACGGGTATGAACCAACAGACTGTCTTGAGTGAGAGACTACGGTCTGCGAATAATACACAAGATCGATCACTGCTTCACGTGAAAGATCATGCATCACCTGTAGTCTCCTCGAATAAGGGTATTATGGAATCATTCCAACAAGACACATCTGAAGCTCAATCAACCCCATTCAAAACGAGGCCACCTATGCCACAATCTAACAGTCCCTTTACCATCTCTCCAATCTCTGCGTCAAAACCAAGTTTCAATTGGTCTGGAAATAAGTCTAGCAATACAACTTCTTATGCTGAGGAATCTGCCCCATCGCAGATTAAGGATACAAGGACAGTTTCACAACCAGGGGGATCAAGTTTTCTTCCGAAACGACCAGTGGCCTCGACTGTACTTGAACAGACAGAAAAGAAGGCTGGAGAATTCAAATTTTCCGAAGCTAAGGCCAATGCGTTTGTTGAAACAGCTGCTGGAAGTGTGCAGCGGCTTTCTACCACATCATCAGGATCTGATTTTGAATCTAGCAAAGGTTTTGGTGCTCAATTTTCAACCATGTCGTCTGGTGCACCAGCATCTAGTTTTTCTTCAAAATCGTTGTTTGGTTTCAATTCCAGTAGCAGTATCCCTGGTGATAAATTTACTTTTCCTGCTGTAACGGCACCTTTGTCTGGTACTCCGCTTGATTCCACTTCCACCTTATTTACAGCATCATCAGCTCCAGTGTCATCCTCTTCCCAAGATCCAGTTCCAGCATCTATACCCATTAGCTCAGCACCAGTCCCGCAAACGTTTTCAGTCACATCTACATCCACTGTTTCAGCTACGGGGTTCAATGTTCCATTTGGTAAACCTTTGACCAGTGTCAAAGTAGATCTCAATCAAGCAGCTCCGTCAACACCTTCTCCATCACCTGGTCCCACAGCTGGTTTCACTTTTAATTTACCAGCTTTGTCTCCATCATCCCCTGAGATGGTCTCATCCTCAACAGGCCAGTCTTCATTATTTCCACCATCTGCTCCAACATCGCAAGTGTCATCTGATCAGGCCTCTGCAACCAGTTCCCTAACAGATAGTAGTCGTTTGTTCTCATCAACTTCCTTATCTTCGACTCCCCCTATTACTCCTCCTGATGCGTTTCAGTCACCTCAAGTTTCCACCCCGTCATCTGCTGTCCCCATTACAGAGCCAGTCTCAGAACCTAAAAAACCAGAGGCTCAAAGTTCGTCAATTCTAAGTACGCAAAGTACTGTAGATTCTGTAGCAAATGCAACAAAAACACAGAATGAGCCACTGCCGGTGAAAAGTGAAATTTCAAACCCAGGGACTACAGTAACCCCTGTCAGTTCATCTGGGTTCCTGTCTGGATTTTCATCAGGAACACAGTCTAGTCTTGCAAGCATGGCGGCTCCTTCATTCAGTTGGCCAGGGAGTTCTCAGCCACAACAGCTATCTTCTACACCTGCCCCTTTCCCTGCATCCTCACCAACTTCAGCAAGTCCATTTGGTGAGAAAAAAGATATTGTAGATACACAGGAAGATGAAATGGACGAAGAAGCTCCAGAGGCTAGTCAGACAACTGAACTTAGTATGGGAAGTTTTGGAGGTTTCGGGCTTGGGTCAACTCCAAACCCGGGTGCCCCCAAAACAAATCCATTTGGTGGTCCCTTTGGTAATGCTACAACAACAACAAGTAATCCATTCAATATGACAGTTCCTAGTGGCGAGCTATTCAAACCTGCCTCGTTCAATTTTCAAAATCCTCAACCATCTCAACCAGCAGGTTTTGGTTCGTTCTCTGTAACACCTTCTCAGACACCTGCTCAGAGTGGATTTGGCCAACCGTCACAGATTGGTGGGGGACAGCAAGCTCTAGGGTCGGTTCTTGGCTCCTTTGGGCAGTCGAGACAGATTGGTGCTGGGCTCCCAGGAGCTACGTTTGGTTCTCCTACAGGATTTGGTGGCTCTAACCCAGGAAGTGGTCTGCCAAATGCACCAGCATCTGGTGGTTTTGCTGCTGCTGGTTCTAGTGCCACTGGTGGCTTTGCGGCCATGGCTTCAGCTGGTAGAGGCTTTGCTGGTGCTTCTTCTACTCCCACTGGTGGCTTCGCTGCGTTAGCCTCAGGTAGTGGAGGCTTTGCTGGTGCTGCTCCAGGAGGAGGAGGCGGTGGATTTGGTGGACTTGGTTCAGGCACCGGAGGTTTCGGAGGCTTTGCTCCTCAGGGTAGTAGTGGAGGTTTCGCGGGAGCAGCAGGAGGTGGCGGTTTTGGTGGTTTCGGCGGACAAGCGCAAGGCCAAGCGGGTGGTGGTGGATTCTCAGCCTTTGGTGGCAACTCGGGAGCAACAGGAAAGCCCTCGGAACTCTTCACACAGATGAGAAAATGA

Protein Analysis

1816

Amino Acids

192.57

Weight (kDa)

5.38

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 4537, 4894
AasI GACNNNNNNGTC 2 cut(s) 1109, 2322
Acc16I TGCGCA 1 cut(s) 1698
Acc36I ACCTGC 4 cut(s) 4537, 4813, 4838, 4894
AccB1I GGYRCC 3 cut(s) 3727, 4703, 5258
AccB7I CCANNNNNTGG 5 cut(s) 1079, 3980, 4727, 5045, 5069
AccBSI CCGCTC 1 cut(s) 2146
AccII CGCG 2 cut(s) 2276, 5309
AccIII TCCGGA 2 cut(s) 1166, 1586
AclI AACGTT 1 cut(s) 3857
AclWI GGATC 7 cut(s) 1768, 2374, 2821, 2834, 3430, 3583, 3803
AcoI YGGCCR 4 cut(s) 1268, 4490, 4903, 5115
AcsI RAATTY 8 cut(s) 638, 1472, 1637, 2965, 3491, 3497, 3704, 4377
AcuI CTGAAG 4 cut(s) 2868, 3249, 4542, 5109
AcvI CACGTG 1 cut(s) 3157
AcyI GRCGYC 1 cut(s) 564
AfeI AGCGCT 1 cut(s) 1989
AflII CTTAAG 1 cut(s) 392
AflIII ACRYGT 3 cut(s) 544, 2178, 2671
AjiI CACGTC 1 cut(s) 2672
AjuI GAANNNNNNNTTGG 2 cut(s) 3798, 3830
Alw21I GWGCWC 3 cut(s) 2357, 3610, 3637
Alw44I GTGCAC 1 cut(s) 3633
AlwI GGATC 7 cut(s) 1768, 2374, 2821, 2834, 3430, 3583, 3803
AlwNI CAGNNNCTG 4 cut(s) 1499, 3539, 3578, 5069
Ama87I CYCGRG 3 cut(s) 2214, 4699, 5401
Aor13HI TCCGGA 2 cut(s) 1166, 1586
Aor51HI AGCGCT 1 cut(s) 1989
ApaLI GTGCAC 1 cut(s) 3633
ApoI RAATTY 8 cut(s) 638, 1472, 1637, 2965, 3491, 3497, 3704, 4377
ArsI GACNNNNNNTTYG 2 cut(s) 945, 977
Asp700I GAANNNNTTC 1 cut(s) 1677
AspA2I CCTAGG 1 cut(s) 1577
AspLEI GCGC 4 cut(s) 1699, 1990, 2276, 5356
AspS9I GGNCC 8 cut(s) 917, 1652, 1862, 2156, 2212, 2249, 3983, 4730
AsuC2I CCSGG 5 cut(s) 190, 905, 2253, 4700, 4701
AsuII TTCGAA 2 cut(s) 497, 2109
AvaI CYCGRG 3 cut(s) 2214, 4699, 5401
AvaII GGWCC 7 cut(s) 917, 1652, 1862, 2156, 2249, 3983, 4730
AvrII CCTAGG 1 cut(s) 1577
AxyI CCTNAGG 3 cut(s) 1618, 5188, 5286
BaeGI GKGCMC 2 cut(s) 3637, 4708
BalI TGGCCA 2 cut(s) 4492, 4905
BamHI GGATCC 1 cut(s) 2826
BanI GGYRCC 3 cut(s) 3727, 4703, 5258
BanII GRGCYC 2 cut(s) 1086, 4992
BauI CACGAG 1 cut(s) 2363
BbrPI CACGTG 1 cut(s) 3157
BbsI GAAGAC 3 cut(s) 705, 3083, 4056
Bbv12I GWGCWC 3 cut(s) 2357, 3610, 3637
BbvCI CCTCAGC 1 cut(s) 3366
BceAI ACGGC 4 cut(s) 149, 551, 1283, 3741
BcgI CGANNNNNNTGC 2 cut(s) 1456, 1490
BciVI GTATCC 3 cut(s) 2218, 3388, 3701
BclI TGATCA 2 cut(s) 1399, 4108
BcnI CCSGG 5 cut(s) 190, 905, 2253, 4700, 4701
BfmI CTRYAG 9 cut(s) 600, 1140, 1772, 3062, 3177, 4317, 4326, 4395, 5016
BfoI RGCGCY 1 cut(s) 1991
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 4 cut(s) 4537, 4813, 4838, 4894
BfuI GTATCC 3 cut(s) 2218, 3388, 3701
BglII AGATCT 1 cut(s) 3940
BlnI CCTAGG 1 cut(s) 1577
BlpI GCTNAGC 3 cut(s) 1991, 2727, 3838
BmcAI AGTACT 3 cut(s) 2152, 2468, 4315
Bme18I GGWCC 7 cut(s) 917, 1652, 1862, 2156, 2249, 3983, 4730
BmeT110I CYCGRG 3 cut(s) 2214, 4699, 5401
BmgBI CACGTC 1 cut(s) 2672
BmgT120I GGNCC 8 cut(s) 917, 1652, 1862, 2156, 2212, 2249, 3983, 4730
BmrI ACTGGG 2 cut(s) 513, 2187
BmuI ACTGGG 2 cut(s) 513, 2187
BoxI GACNNNNGTC 2 cut(s) 3118, 3929
BpiI GAAGAC 3 cut(s) 705, 3083, 4056
BpmI CTGGAG 6 cut(s) 1830, 2327, 3507, 3771, 4611, 5202
Bpu10I CCTNAGC 3 cut(s) 2502, 3366, 3510
Bpu1102I GCTNAGC 3 cut(s) 1991, 2727, 3838
Bpu14I TTCGAA 2 cut(s) 497, 2109
BpuEI CTTGAG 5 cut(s) 591, 2189, 2528, 3124, 4200
BpuMI CCSGG 5 cut(s) 190, 905, 2253, 4700, 4701
Bsa29I ATCGAT 3 cut(s) 1128, 2775, 3142
BsaAI YACGTR 1 cut(s) 3157
BsaBI GATNNNNATC 3 cut(s) 1053, 3945, 4438
BsaHI GRCGYC 1 cut(s) 564
BsaI GGTCTC 2 cut(s) 1055, 4048
BsaWI WCCGGW 3 cut(s) 1166, 1586, 5261
BsaXI ACNNNNNCTCC 4 cut(s) 3280, 3310, 3955, 3985
Bse118I RCCGGY 1 cut(s) 4363
Bse21I CCTNAGG 3 cut(s) 1618, 5188, 5286
Bse3DI GCAATG 1 cut(s) 2299
Bse8I GATNNNNATC 3 cut(s) 1053, 3945, 4438
BseAI TCCGGA 2 cut(s) 1166, 1586
BseCI ATCGAT 3 cut(s) 1128, 2775, 3142
BseJI GATNNNNATC 3 cut(s) 1053, 3945, 4438
BseMI GCAATG 1 cut(s) 2299
BseRI GAGGAG 6 cut(s) 3004, 3175, 4182, 5238, 5241, 5274
BseSI GKGCMC 2 cut(s) 3637, 4708
BseYI CCCAGC 1 cut(s) 4985
BsgI GTGCAG 2 cut(s) 1053, 3569
Bsh1236I CGCG 2 cut(s) 2276, 5309
Bsh1285I CGRYCG 2 cut(s) 909, 2602
BshNI GGYRCC 3 cut(s) 3727, 4703, 5258
BshVI ATCGAT 3 cut(s) 1128, 2775, 3142
BsiEI CGRYCG 2 cut(s) 909, 2602
BsiHKAI GWGCWC 3 cut(s) 2357, 3610, 3637
BsiHKCI CYCGRG 3 cut(s) 2214, 4699, 5401
BsiSI CCGG 8 cut(s) 189, 905, 1167, 1587, 2252, 4364, 4700, 5262
BsmBI CGTCTC 1 cut(s) 1843
BsmI GAATGC 1 cut(s) 478
Bso31I GGTCTC 2 cut(s) 1055, 4048
BsoBI CYCGRG 3 cut(s) 2214, 4699, 5401
Bsp119I TTCGAA 2 cut(s) 497, 2109
Bsp1286I GDGCHC 6 cut(s) 1086, 2357, 3610, 3637, 4708, 4992
Bsp13I TCCGGA 2 cut(s) 1166, 1586
Bsp1407I TGTACA 2 cut(s) 1903, 1957
Bsp1720I GCTNAGC 3 cut(s) 1991, 2727, 3838
Bsp19I CCATGG 2 cut(s) 1817, 5118
BspDI ATCGAT 3 cut(s) 1128, 2775, 3142
BspEI TCCGGA 2 cut(s) 1166, 1586
BspFNI CGCG 2 cut(s) 2276, 5309
BspMAI CTGCAG 2 cut(s) 1776, 3066
BspMI ACCTGC 4 cut(s) 4537, 4813, 4838, 4894
BspPI GGATC 7 cut(s) 1768, 2374, 2821, 2834, 3430, 3583, 3803
BspQI GCTCTTC 1 cut(s) 2345
BspT104I TTCGAA 2 cut(s) 497, 2109
BspT107I GGYRCC 3 cut(s) 3727, 4703, 5258
BspTI CTTAAG 1 cut(s) 392
BspTNI GGTCTC 2 cut(s) 1055, 4048
BsrBI CCGCTC 1 cut(s) 2146
BsrDI GCAATG 1 cut(s) 2299
BsrFI RCCGGY 1 cut(s) 4363
BsrGI TGTACA 2 cut(s) 1903, 1957
BssAI RCCGGY 1 cut(s) 4363
BssNI GRCGYC 1 cut(s) 564
BssSI CACGAG 1 cut(s) 2363
BssT1I CCWWGG 4 cut(s) 1073, 1577, 1817, 5118
Bst2BI CACGAG 1 cut(s) 2363
Bst6I CTCTTC 7 cut(s) 1303, 2345, 2632, 2911, 2989, 3805, 5435
BstACI GRCGYC 1 cut(s) 564
BstAFI CTTAAG 1 cut(s) 392
BstAUI TGTACA 2 cut(s) 1903, 1957
BstBAI YACGTR 1 cut(s) 3157
BstBI TTCGAA 2 cut(s) 497, 2109
BstC8I GCNNGC 9 cut(s) 1272, 1722, 1772, 2332, 2373, 2645, 4465, 4793, 4935
BstDSI CCRYGG 2 cut(s) 1817, 5118
BstENI CCTNNNNNAGG 2 cut(s) 800, 2010
BstFNI CGCG 2 cut(s) 2276, 5309
BstH2I RGCGCY 1 cut(s) 1991
BstHHI GCGC 4 cut(s) 1699, 1990, 2276, 5356
BstMCI CGRYCG 2 cut(s) 909, 2602
BstNSI RCATGY 2 cut(s) 548, 2182
BstPAI GACNNNNGTC 2 cut(s) 3118, 3929
BstSFI CTRYAG 9 cut(s) 600, 1140, 1772, 3062, 3177, 4317, 4326, 4395, 5016
BstSLI GKGCMC 2 cut(s) 3637, 4708
BstUI CGCG 2 cut(s) 2276, 5309
BstV2I GAAGAC 3 cut(s) 705, 3083, 4056
BstX2I RGATCY 6 cut(s) 1760, 2379, 2826, 3575, 3808, 3940
BstXI CCANNNNNNTGG 1 cut(s) 5369
BstYI RGATCY 6 cut(s) 1760, 2379, 2826, 3575, 3808, 3940
Bsu15I ATCGAT 3 cut(s) 1128, 2775, 3142
Bsu36I CCTNAGG 3 cut(s) 1618, 5188, 5286
BsuI GTATCC 3 cut(s) 2218, 3388, 3701
BsuTUI ATCGAT 3 cut(s) 1128, 2775, 3142
BtgI CCRYGG 2 cut(s) 1817, 5118
BtgZI GCGATG 2 cut(s) 3366, 4077
BtrI CACGTC 1 cut(s) 2672
BtsI GCAGTG 2 cut(s) 3146, 4358
BtsIMutI CAGTG 9 cut(s) 1500, 3146, 3453, 3795, 3879, 3934, 4358, 5100, 5163
BveI ACCTGC 4 cut(s) 4537, 4813, 4838, 4894
Cac8I GCNNGC 9 cut(s) 1272, 1722, 1772, 2332, 2373, 2645, 4465, 4793, 4935
CaiI CAGNNNCTG 4 cut(s) 1499, 3539, 3578, 5069
CfoI GCGC 4 cut(s) 1699, 1990, 2276, 5356
Cfr10I RCCGGY 1 cut(s) 4363
Cfr13I GGNCC 8 cut(s) 917, 1652, 1862, 2156, 2212, 2249, 3983, 4730
Cfr9I CCCGGG 1 cut(s) 4699
ClaI ATCGAT 3 cut(s) 1128, 2775, 3142
CseI GACGC 3 cut(s) 572, 1825, 3297
CsiI ACCWGGT 1 cut(s) 3979
DrdI GACNNNNNNGTC 2 cut(s) 1109, 2322
DseDI GACNNNNNNGTC 2 cut(s) 1109, 2322
EaeI YGGCCR 4 cut(s) 1268, 4490, 4903, 5115
Eam1104I CTCTTC 7 cut(s) 1303, 2345, 2632, 2911, 2989, 3805, 5435
EarI CTCTTC 7 cut(s) 1303, 2345, 2632, 2911, 2989, 3805, 5435
EciI GGCGGA 1 cut(s) 5361
Eco130I CCWWGG 4 cut(s) 1073, 1577, 1817, 5118
Eco147I AGGCCT 1 cut(s) 4115
Eco24I GRGCYC 2 cut(s) 1086, 4992
Eco31I GGTCTC 2 cut(s) 1055, 4048
Eco47I GGWCC 7 cut(s) 917, 1652, 1862, 2156, 2249, 3983, 4730
Eco47III AGCGCT 1 cut(s) 1989
Eco57I CTGAAG 4 cut(s) 2868, 3249, 4542, 5109
Eco72I CACGTG 1 cut(s) 3157
Eco81I CCTNAGG 3 cut(s) 1618, 5188, 5286
Eco88I CYCGRG 3 cut(s) 2214, 4699, 5401
EcoNI CCTNNNNNAGG 2 cut(s) 800, 2010
EcoRI GAATTC 2 cut(s) 1472, 3491
EcoT14I CCWWGG 4 cut(s) 1073, 1577, 1817, 5118
EcoT22I ATGCAT 3 cut(s) 1716, 2881, 3172
EcoT38I GRGCYC 2 cut(s) 1086, 4992
ErhI CCWWGG 4 cut(s) 1073, 1577, 1817, 5118
Esp3I CGTCTC 1 cut(s) 1843
FalI AAGNNNNNCTT 2 cut(s) 1329, 1361
FauI CCCGC 4 cut(s) 2923, 3858, 5302, 5359
FbaI TGATCA 2 cut(s) 1399, 4108
FriOI GRGCYC 2 cut(s) 1086, 4992
FspI TGCGCA 1 cut(s) 1698
GlaI GCGC 4 cut(s) 1698, 1989, 2275, 5355
GsaI CCCAGC 1 cut(s) 4989
GsuI CTGGAG 6 cut(s) 1830, 2327, 3507, 3771, 4611, 5202
HaeII RGCGCY 1 cut(s) 1991
HapII CCGG 8 cut(s) 189, 905, 1167, 1587, 2252, 4364, 4700, 5262
HgaI GACGC 3 cut(s) 572, 1825, 3297
HhaI GCGC 4 cut(s) 1699, 1990, 2276, 5356
Hin1I GRCGYC 1 cut(s) 564
Hin6I GCGC 4 cut(s) 1697, 1988, 2274, 5354
HinP1I GCGC 4 cut(s) 1697, 1988, 2274, 5354
HincII GTYRAC 3 cut(s) 562, 3963, 4689
HindII GTYRAC 3 cut(s) 562, 3963, 4689
HindIII AAGCTT 1 cut(s) 1676
HpaII CCGG 8 cut(s) 189, 905, 1167, 1587, 2252, 4364, 4700, 5262
Hpy166II GTNNAC 8 cut(s) 562, 1927, 2621, 3635, 3917, 3963, 4689, 5246
Hpy8I GTNNAC 8 cut(s) 562, 1927, 2621, 3635, 3917, 3963, 4689, 5246
Hpy99I CGWCG 1 cut(s) 287
HpyCH4IV ACGT 8 cut(s) 303, 1805, 2345, 2671, 2944, 3156, 3857, 5003
HpySE526I ACGT 8 cut(s) 303, 1805, 2345, 2671, 2944, 3156, 3857, 5003
Hsp92I GRCGYC 1 cut(s) 564
HspAI GCGC 4 cut(s) 1697, 1988, 2274, 5354
Kpn2I TCCGGA 2 cut(s) 1166, 1586
Ksp22I TGATCA 2 cut(s) 1399, 4108
LguI GCTCTTC 1 cut(s) 2345
MabI ACCWGGT 1 cut(s) 3979
MaeII ACGT 8 cut(s) 303, 1805, 2345, 2671, 2944, 3156, 3857, 5003
MbiI CCGCTC 1 cut(s) 2146
MfeI CAATTG 4 cut(s) 2081, 2714, 2820, 3325
MflI RGATCY 6 cut(s) 1760, 2379, 2826, 3575, 3808, 3940
MhlI GDGCHC 6 cut(s) 1086, 2357, 3610, 3637, 4708, 4992
MlsI TGGCCA 2 cut(s) 4492, 4905
MluNI TGGCCA 2 cut(s) 4492, 4905
MlyI GAGTC 8 cut(s) 443, 668, 823, 1113, 1487, 1742, 2545, 4171
MmeI TCCRAC 4 cut(s) 895, 2407, 3238, 4112
Mox20I TGGCCA 2 cut(s) 4492, 4905
Mph1103I ATGCAT 3 cut(s) 1716, 2881, 3172
MroI TCCGGA 2 cut(s) 1166, 1586
MroXI GAANNNNTTC 1 cut(s) 1677
MscI TGGCCA 2 cut(s) 4492, 4905
MslI CAYNNNNRTG 1 cut(s) 5438
Msp20I TGGCCA 2 cut(s) 4492, 4905
MspA1I CMGCKG 6 cut(s) 326, 769, 3536, 3553, 3992, 5129
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 8 cut(s) 189, 905, 1167, 1587, 2252, 4364, 4700, 5262
MunI CAATTG 4 cut(s) 2081, 2714, 2820, 3325
Mva1269I GAATGC 1 cut(s) 478
MvnI CGCG 2 cut(s) 2276, 5309
NciI CCSGG 5 cut(s) 190, 905, 2253, 4700, 4701
NcoI CCATGG 2 cut(s) 1817, 5118
NmuCI GTSAC 8 cut(s) 132, 346, 961, 1791, 2085, 3865, 4209, 4911
NsbI TGCGCA 1 cut(s) 1698
NsiI ATGCAT 3 cut(s) 1716, 2881, 3172
NspI RCATGY 2 cut(s) 548, 2182
NspV TTCGAA 2 cut(s) 497, 2109
PaqCI CACCTGC 2 cut(s) 4537, 4894
PasI CCCWGGG 1 cut(s) 4388
PceI AGGCCT 1 cut(s) 4115
PciI ACATGT 2 cut(s) 544, 2178
PciSI GCTCTTC 1 cut(s) 2345
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 1677
PflFI GACNNNGTC 1 cut(s) 2943
PflMI CCANNNNNTGG 5 cut(s) 1079, 3980, 4727, 5045, 5069
PfoI TCCNGGA 2 cut(s) 267, 5218
Ple19I CGATCG 1 cut(s) 2602
PleI GAGTC 8 cut(s) 442, 668, 822, 1113, 1486, 1741, 2545, 4171
PmaCI CACGTG 1 cut(s) 3157
PmlI CACGTG 1 cut(s) 3157
PpsI GAGTC 8 cut(s) 442, 668, 822, 1113, 1486, 1741, 2545, 4171
Ppu21I YACGTR 1 cut(s) 3157
PscI ACATGT 2 cut(s) 544, 2178
PshAI GACNNNNGTC 2 cut(s) 3118, 3929
Psp1406I AACGTT 1 cut(s) 3857
PspCI CACGTG 1 cut(s) 3157
PspFI CCCAGC 1 cut(s) 4985
PspPI GGNCC 8 cut(s) 917, 1652, 1862, 2156, 2212, 2249, 3983, 4730
PsrI GAACNNNNNNTAC 2 cut(s) 44, 76
PstI CTGCAG 2 cut(s) 1776, 3066
PstNI CAGNNNCTG 4 cut(s) 1499, 3539, 3578, 5069
PsuI RGATCY 6 cut(s) 1760, 2379, 2826, 3575, 3808, 3940
PsyI GACNNNGTC 1 cut(s) 2943
PvuI CGATCG 1 cut(s) 2602
PvuII CAGCTG 4 cut(s) 769, 3536, 3992, 5129
RseI CAYNNNNRTG 1 cut(s) 5438
SapI GCTCTTC 1 cut(s) 2345
Sau96I GGNCC 8 cut(s) 917, 1652, 1862, 2156, 2212, 2249, 3983, 4730
ScaI AGTACT 3 cut(s) 2152, 2468, 4315
SchI GAGTC 8 cut(s) 443, 668, 823, 1113, 1487, 1742, 2545, 4171
SduI GDGCHC 6 cut(s) 1086, 2357, 3610, 3637, 4708, 4992
SexAI ACCWGGT 1 cut(s) 3979
SfcI CTRYAG 9 cut(s) 600, 1140, 1772, 3062, 3177, 4317, 4326, 4395, 5016
SfuI TTCGAA 2 cut(s) 497, 2109
SinI GGWCC 7 cut(s) 917, 1652, 1862, 2156, 2249, 3983, 4730
SmaI CCCGGG 1 cut(s) 4701
SmiMI CAYNNNNRTG 1 cut(s) 5438
SmlI CTYRAG 6 cut(s) 392, 606, 2168, 2507, 3103, 4215
SmoI CTYRAG 6 cut(s) 392, 606, 2168, 2507, 3103, 4215
SseBI AGGCCT 1 cut(s) 4115
SspI AATATT 1 cut(s) 1384
StuI AGGCCT 1 cut(s) 4115
StyI CCWWGG 4 cut(s) 1073, 1577, 1817, 5118
TaiI ACGT 8 cut(s) 306, 1808, 2348, 2674, 2947, 3159, 3860, 5006
TaqII GACCGA 1 cut(s) 1640
TatI WGTACW 8 cut(s) 1390, 1742, 1903, 1957, 2150, 2466, 3460, 4313
TauI GCSGC 4 cut(s) 2521, 3556, 4475, 5117
TscAI CASTG 9 cut(s) 1500, 3153, 3453, 3795, 3886, 3934, 4365, 5107, 5170
TseFI GTSAC 8 cut(s) 132, 346, 961, 1791, 2085, 3865, 4209, 4911
Tsp45I GTSAC 8 cut(s) 132, 346, 961, 1791, 2085, 3865, 4209, 4911
TspGWI ACGGA 6 cut(s) 44, 120, 1030, 1151, 2060, 3948
TspMI CCCGGG 1 cut(s) 4699
TspRI CASTG 9 cut(s) 1500, 3153, 3453, 3795, 3886, 3934, 4365, 5107, 5170
Tth111I GACNNNGTC 1 cut(s) 2943
Van91I CCANNNNNTGG 5 cut(s) 1079, 3980, 4727, 5045, 5069
Vha464I CTTAAG 1 cut(s) 392
VneI GTGCAC 1 cut(s) 3633
VpaK11BI GGWCC 7 cut(s) 917, 1652, 1862, 2156, 2249, 3983, 4730
XagI CCTNNNNNAGG 2 cut(s) 800, 2010
XapI RAATTY 8 cut(s) 638, 1472, 1637, 2965, 3491, 3497, 3704, 4377
XceI RCATGY 2 cut(s) 548, 2182
XcmI CCANNNNNNNNNTGG 2 cut(s) 3324, 5369
XmaI CCCGGG 1 cut(s) 4699
XmaJI CCTAGG 1 cut(s) 1577
XmnI GAANNNNTTC 1 cut(s) 1677
ZrmI AGTACT 3 cut(s) 2152, 2468, 4315
Zsp2I ATGCAT 3 cut(s) 1716, 2881, 3172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.