Nuclear pore complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55540 AT1G55540 |
| fragaria_vesca | FvH4_3g45960 FvH4_3g45960 FvH4_3g45960 FvH4_3g45960 |
| malus_domestica | MD11G1001000.v1.1 |
| prunus_persica | Prupe.6G001200_v2.0.a1 Prupe.6G001200_v2.0.a1 Prupe.6G001200_v2.0.a1 Prupe.6G001200_v2.0.a1 |
| pyrus_communis | pycom11g00120 |
| rosa_chinensis | RchiOBHm_Chr5g0084071 |
| rosa_laevigata | RLG00000037079 |
| rosa_multiflora | Rmu_ssc0000372.1_g000089 |
| rosa_roxburghii | Rroxscaffold_1G00000590 |
| rosa_rugosa | Rorug05G0488900 |
| rosa_samantha | Rh5AG541500 Rh5BG566900 Rh5CG588800 Rh5DG575200 |
| rosa_wichuraiana | Rw5G050360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 5162 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1570 |
| AatII | GACGTC | 1 cut(s) | 2054 |
| Acc36I | ACCTGC | 1 cut(s) | 5162 |
| Acc65I | GGTACC | 2 cut(s) | 1336, 3424 |
| AccB1I | GGYRCC | 4 cut(s) | 1336, 3424, 3868, 4736 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 4406, 4706, 5114 |
| AccI | GTMKAC | 2 cut(s) | 2677, 4696 |
| AcoI | YGGCCR | 4 cut(s) | 143, 2709, 4609, 5197 |
| AcsI | RAATTY | 9 cut(s) | 1361, 2065, 2174, 2588, 3472, 3895, 3952, 4234, 4540 |
| AcyI | GRCGYC | 1 cut(s) | 2051 |
| AdeI | CACNNNGTG | 1 cut(s) | 4724 |
| AflII | CTTAAG | 1 cut(s) | 1726 |
| AhlI | ACTAGT | 1 cut(s) | 3398 |
| AjiI | CACGTC | 1 cut(s) | 3497 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1894, 1926 |
| AleI | CACNNNNGTG | 1 cut(s) | 1889 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 460, 492 |
| Alw21I | GWGCWC | 4 cut(s) | 1490, 2342, 2611, 3496 |
| Alw44I | GTGCAC | 1 cut(s) | 3492 |
| Ama87I | CYCGRG | 1 cut(s) | 1370 |
| ApaLI | GTGCAC | 1 cut(s) | 3492 |
| ApoI | RAATTY | 9 cut(s) | 1361, 2065, 2174, 2588, 3472, 3895, 3952, 4234, 4540 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 53, 85, 3362, 3394 |
| AseI | ATTAAT | 2 cut(s) | 599, 2546 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2355 |
| Asp718I | GGTACC | 2 cut(s) | 1336, 3424 |
| AspLEI | GCGC | 1 cut(s) | 2948 |
| AspS9I | GGNCC | 8 cut(s) | 213, 539, 926, 3607, 3986, 4154, 4225, 4628 |
| AsuC2I | CCSGG | 2 cut(s) | 142, 196 |
| AsuHPI | GGTGA | 6 cut(s) | 704, 1118, 1191, 2606, 2757, 4710 |
| AsuII | TTCGAA | 1 cut(s) | 1604 |
| AvaI | CYCGRG | 1 cut(s) | 1370 |
| AvaII | GGWCC | 5 cut(s) | 213, 926, 3986, 4154, 4628 |
| AxyI | CCTNAGG | 1 cut(s) | 3267 |
| BaeGI | GKGCMC | 3 cut(s) | 1886, 3496, 3873 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3951, 3984 |
| BalI | TGGCCA | 2 cut(s) | 4611, 5199 |
| BamHI | GGATCC | 1 cut(s) | 4117 |
| BanI | GGYRCC | 4 cut(s) | 1336, 3424, 3868, 4736 |
| BanII | GRGCYC | 3 cut(s) | 1131, 1490, 2611 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2102, 2134 |
| BbsI | GAAGAC | 1 cut(s) | 169 |
| Bbv12I | GWGCWC | 4 cut(s) | 1490, 2342, 2611, 3496 |
| BceAI | ACGGC | 5 cut(s) | 74, 137, 184, 3327, 3932 |
| BciVI | GTATCC | 3 cut(s) | 613, 718, 3208 |
| BclI | TGATCA | 1 cut(s) | 2539 |
| BcnI | CCSGG | 2 cut(s) | 142, 196 |
| BcuI | ACTAGT | 1 cut(s) | 3398 |
| BfmI | CTRYAG | 6 cut(s) | 2226, 2811, 3765, 3963, 4260, 4511 |
| BfoI | RGCGCY | 1 cut(s) | 2949 |
| BfrI | CTTAAG | 1 cut(s) | 1726 |
| BfuAI | ACCTGC | 1 cut(s) | 5162 |
| BfuI | GTATCC | 3 cut(s) | 613, 718, 3208 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 5168 |
| BglII | AGATCT | 1 cut(s) | 1934 |
| BlpI | GCTNAGC | 1 cut(s) | 4182 |
| BmcAI | AGTACT | 1 cut(s) | 2397 |
| Bme18I | GGWCC | 5 cut(s) | 213, 926, 3986, 4154, 4628 |
| BmeT110I | CYCGRG | 1 cut(s) | 1370 |
| BmgBI | CACGTC | 1 cut(s) | 3497 |
| BmgT120I | GGNCC | 8 cut(s) | 213, 539, 926, 3607, 3986, 4154, 4225, 4628 |
| BmrI | ACTGGG | 2 cut(s) | 2128, 3791 |
| BmuI | ACTGGG | 2 cut(s) | 2128, 3791 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3399 |
| BpiI | GAAGAC | 1 cut(s) | 169 |
| BpmI | CTGGAG | 8 cut(s) | 971, 2312, 2485, 3149, 3801, 4806, 5091, 5238 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4182 |
| Bpu14I | TTCGAA | 1 cut(s) | 1604 |
| BpuEI | CTTGAG | 4 cut(s) | 1502, 1728, 2513, 2597 |
| BpuMI | CCSGG | 2 cut(s) | 142, 196 |
| BsaHI | GRCGYC | 1 cut(s) | 2051 |
| BsaI | GGTCTC | 1 cut(s) | 1987 |
| BsaJI | CCNNGG | 6 cut(s) | 523, 2199, 3152, 4278, 4345, 4631 |
| BsaWI | WCCGGW | 1 cut(s) | 5243 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 33, 63, 365, 395, 5151, 5181 |
| Bse118I | RCCGGY | 1 cut(s) | 1972 |
| Bse21I | CCTNAGG | 1 cut(s) | 3267 |
| Bse3DI | GCAATG | 1 cut(s) | 751 |
| BseDI | CCNNGG | 6 cut(s) | 523, 2199, 3152, 4278, 4345, 4631 |
| BseMI | GCAATG | 1 cut(s) | 751 |
| BseRI | GAGGAG | 3 cut(s) | 1046, 2995, 2998 |
| BseSI | GKGCMC | 3 cut(s) | 1886, 3496, 3873 |
| BseX3I | CGGCCG | 1 cut(s) | 2709 |
| BsgI | GTGCAG | 5 cut(s) | 1658, 4089, 4911, 5091, 5121 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2712 |
| BshNI | GGYRCC | 4 cut(s) | 1336, 3424, 3868, 4736 |
| BsiEI | CGRYCG | 1 cut(s) | 2712 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1490, 2342, 2611, 3496 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1370 |
| BsiSI | CCGG | 4 cut(s) | 142, 195, 1973, 5244 |
| BslFI | GGGAC | 4 cut(s) | 120, 1736, 2471, 3678 |
| BsmBI | CGTCTC | 1 cut(s) | 1781 |
| BsmFI | GGGAC | 4 cut(s) | 120, 1736, 2471, 3678 |
| BsmI | GAATGC | 7 cut(s) | 784, 994, 1209, 2307, 2647, 3207, 4279 |
| Bso31I | GGTCTC | 1 cut(s) | 1987 |
| BsoBI | CYCGRG | 1 cut(s) | 1370 |
| Bsp119I | TTCGAA | 1 cut(s) | 1604 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1131, 1490, 1886, 2342, 2611, 3496, 3873 |
| Bsp1407I | TGTACA | 4 cut(s) | 808, 1648, 1716, 2389 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4182 |
| Bsp19I | CCATGG | 2 cut(s) | 523, 3152 |
| BspHI | TCATGA | 1 cut(s) | 2359 |
| BspMAI | CTGCAG | 1 cut(s) | 3769 |
| BspMI | ACCTGC | 1 cut(s) | 5162 |
| BspQI | GCTCTTC | 2 cut(s) | 2330, 4372 |
| BspT104I | TTCGAA | 1 cut(s) | 1604 |
| BspT107I | GGYRCC | 4 cut(s) | 1336, 3424, 3868, 4736 |
| BspTI | CTTAAG | 1 cut(s) | 1726 |
| BspTNI | GGTCTC | 1 cut(s) | 1987 |
| BsrDI | GCAATG | 1 cut(s) | 751 |
| BsrFI | RCCGGY | 1 cut(s) | 1972 |
| BsrGI | TGTACA | 4 cut(s) | 808, 1648, 1716, 2389 |
| BssAI | RCCGGY | 1 cut(s) | 1972 |
| BssECI | CCNNGG | 6 cut(s) | 523, 2199, 3152, 4278, 4345, 4631 |
| BssNI | GRCGYC | 1 cut(s) | 2051 |
| BssT1I | CCWWGG | 4 cut(s) | 523, 2199, 3152, 4345 |
| Bst6I | CTCTTC | 5 cut(s) | 1311, 2330, 2495, 4293, 4372 |
| BstACI | GRCGYC | 1 cut(s) | 2051 |
| BstAFI | CTTAAG | 1 cut(s) | 1726 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 356, 974, 5138 |
| BstAUI | TGTACA | 4 cut(s) | 808, 1648, 1716, 2389 |
| BstBI | TTCGAA | 1 cut(s) | 1604 |
| BstDSI | CCRYGG | 2 cut(s) | 523, 3152 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 401, 3128 |
| BstH2I | RGCGCY | 1 cut(s) | 2949 |
| BstHHI | GCGC | 1 cut(s) | 2948 |
| BstMCI | CGRYCG | 1 cut(s) | 2712 |
| BstNSI | RCATGY | 1 cut(s) | 1004 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3399 |
| BstSFI | CTRYAG | 6 cut(s) | 2226, 2811, 3765, 3963, 4260, 4511 |
| BstSLI | GKGCMC | 3 cut(s) | 1886, 3496, 3873 |
| BstV2I | GAAGAC | 1 cut(s) | 169 |
| BstX2I | RGATCY | 4 cut(s) | 550, 1934, 4117, 5207 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2206, 3466 |
| BstYI | RGATCY | 4 cut(s) | 550, 1934, 4117, 5207 |
| BstZI | CGGCCG | 1 cut(s) | 2709 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3267 |
| BsuI | GTATCC | 3 cut(s) | 613, 718, 3208 |
| BtgI | CCRYGG | 2 cut(s) | 523, 3152 |
| BtrI | CACGTC | 1 cut(s) | 3497 |
| BtsI | GCAGTG | 1 cut(s) | 1777 |
| BveI | ACCTGC | 1 cut(s) | 5162 |
| CciI | TCATGA | 1 cut(s) | 2359 |
| CfoI | GCGC | 1 cut(s) | 2948 |
| Cfr10I | RCCGGY | 1 cut(s) | 1972 |
| Cfr13I | GGNCC | 8 cut(s) | 213, 539, 926, 3607, 3986, 4154, 4225, 4628 |
| CsiI | ACCWGGT | 1 cut(s) | 2236 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4582, 4617 |
| DraI | TTTAAA | 1 cut(s) | 1579 |
| DraIII | CACNNNGTG | 1 cut(s) | 4724 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1570 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1570 |
| EaeI | YGGCCR | 4 cut(s) | 143, 2709, 4609, 5197 |
| EagI | CGGCCG | 1 cut(s) | 2709 |
| Eam1104I | CTCTTC | 5 cut(s) | 1311, 2330, 2495, 4293, 4372 |
| EarI | CTCTTC | 5 cut(s) | 1311, 2330, 2495, 4293, 4372 |
| Ecl136II | GAGCTC | 2 cut(s) | 1488, 2609 |
| EclXI | CGGCCG | 1 cut(s) | 2709 |
| Eco130I | CCWWGG | 4 cut(s) | 523, 2199, 3152, 4345 |
| Eco147I | AGGCCT | 1 cut(s) | 3526 |
| Eco24I | GRGCYC | 3 cut(s) | 1131, 1490, 2611 |
| Eco31I | GGTCTC | 1 cut(s) | 1987 |
| Eco32I | GATATC | 1 cut(s) | 46 |
| Eco47I | GGWCC | 5 cut(s) | 213, 926, 3986, 4154, 4628 |
| Eco52I | CGGCCG | 1 cut(s) | 2709 |
| Eco53kI | GAGCTC | 2 cut(s) | 1488, 2609 |
| Eco81I | CCTNAGG | 1 cut(s) | 3267 |
| Eco88I | CYCGRG | 1 cut(s) | 1370 |
| EcoICRI | GAGCTC | 2 cut(s) | 1488, 2609 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 401, 3128 |
| EcoO109I | RGGNCCY | 1 cut(s) | 4154 |
| EcoRI | GAATTC | 1 cut(s) | 3952 |
| EcoRV | GATATC | 1 cut(s) | 46 |
| EcoT14I | CCWWGG | 4 cut(s) | 523, 2199, 3152, 4345 |
| EcoT38I | GRGCYC | 3 cut(s) | 1131, 1490, 2611 |
| ErhI | CCWWGG | 4 cut(s) | 523, 2199, 3152, 4345 |
| Esp3I | CGTCTC | 1 cut(s) | 1781 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 250, 282, 913, 945, 1443, 1475, 1626, 1658 |
| FaqI | GGGAC | 4 cut(s) | 120, 1736, 2471, 3678 |
| FauI | CCCGC | 1 cut(s) | 5141 |
| FbaI | TGATCA | 1 cut(s) | 2539 |
| FblI | GTMKAC | 2 cut(s) | 2677, 4696 |
| FriOI | GRGCYC | 3 cut(s) | 1131, 1490, 2611 |
| GlaI | GCGC | 1 cut(s) | 2947 |
| GsuI | CTGGAG | 8 cut(s) | 971, 2312, 2485, 3149, 3801, 4806, 5091, 5238 |
| HaeII | RGCGCY | 1 cut(s) | 2949 |
| HapII | CCGG | 4 cut(s) | 142, 195, 1973, 5244 |
| HhaI | GCGC | 1 cut(s) | 2948 |
| Hin1I | GRCGYC | 1 cut(s) | 2051 |
| Hin6I | GCGC | 1 cut(s) | 2946 |
| HinP1I | GCGC | 1 cut(s) | 2946 |
| HincII | GTYRAC | 2 cut(s) | 1586, 1957 |
| HindII | GTYRAC | 2 cut(s) | 1586, 1957 |
| HindIII | AAGCTT | 2 cut(s) | 1397, 2436 |
| HpaI | GTTAAC | 1 cut(s) | 1957 |
| HpaII | CCGG | 4 cut(s) | 142, 195, 1973, 5244 |
| HphI | GGTGA | 6 cut(s) | 704, 1118, 1191, 2606, 2757, 4710 |
| Hpy99I | CGWCG | 2 cut(s) | 185, 389 |
| HpyCH4IV | ACGT | 3 cut(s) | 2051, 2330, 3496 |
| HpySE526I | ACGT | 3 cut(s) | 2051, 2330, 3496 |
| Hsp92I | GRCGYC | 1 cut(s) | 2051 |
| HspAI | GCGC | 1 cut(s) | 2946 |
| KpnI | GGTACC | 2 cut(s) | 1340, 3428 |
| Ksp22I | TGATCA | 1 cut(s) | 2539 |
| KspAI | GTTAAC | 1 cut(s) | 1957 |
| LguI | GCTCTTC | 2 cut(s) | 2330, 4372 |
| LmnI | GCTCC | 7 cut(s) | 1417, 2606, 3003, 4309, 5110, 5140, 5159 |
| MabI | ACCWGGT | 1 cut(s) | 2236 |
| MaeII | ACGT | 3 cut(s) | 2051, 2330, 3496 |
| MaeIII | GTNAC | 8 cut(s) | 1037, 1273, 1538, 2763, 3142, 3784, 4168, 4435 |
| MflI | RGATCY | 4 cut(s) | 550, 1934, 4117, 5207 |
| MhlI | GDGCHC | 7 cut(s) | 1131, 1490, 1886, 2342, 2611, 3496, 3873 |
| MlsI | TGGCCA | 2 cut(s) | 4611, 5199 |
| MluNI | TGGCCA | 2 cut(s) | 4611, 5199 |
| MlyI | GAGTC | 4 cut(s) | 292, 1826, 2771, 2984 |
| MmeI | TCCRAC | 5 cut(s) | 1925, 2187, 2392, 3524, 4606 |
| Mox20I | TGGCCA | 2 cut(s) | 4611, 5199 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2355 |
| MscI | TGGCCA | 2 cut(s) | 4611, 5199 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1889, 2568 |
| Msp20I | TGGCCA | 2 cut(s) | 4611, 5199 |
| MspA1I | CMGCKG | 4 cut(s) | 236, 2003, 3821, 4325 |
| MspCI | CTTAAG | 1 cut(s) | 1726 |
| MspI | CCGG | 4 cut(s) | 142, 195, 1973, 5244 |
| Mva1269I | GAATGC | 7 cut(s) | 784, 994, 1209, 2307, 2647, 3207, 4279 |
| NciI | CCSGG | 2 cut(s) | 142, 196 |
| NcoI | CCATGG | 2 cut(s) | 523, 3152 |
| NmuCI | GTSAC | 4 cut(s) | 2763, 3784, 4168, 4435 |
| NspI | RCATGY | 1 cut(s) | 1004 |
| NspV | TTCGAA | 1 cut(s) | 1604 |
| OliI | CACNNNNGTG | 1 cut(s) | 1889 |
| PacI | TTAATTAA | 1 cut(s) | 2550 |
| PagI | TCATGA | 1 cut(s) | 2359 |
| PaqCI | CACCTGC | 1 cut(s) | 5162 |
| PceI | AGGCCT | 1 cut(s) | 3526 |
| PciSI | GCTCTTC | 2 cut(s) | 2330, 4372 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PctI | GAATGC | 7 cut(s) | 784, 994, 1209, 2307, 2647, 3207, 4279 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2355 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 4406, 4706, 5114 |
| PfoI | TCCNGGA | 3 cut(s) | 396, 683, 4120 |
| PleI | GAGTC | 4 cut(s) | 291, 1825, 2770, 2984 |
| PpsI | GAGTC | 4 cut(s) | 291, 1825, 2770, 2984 |
| PpuMI | RGGWCCY | 1 cut(s) | 4154 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3399 |
| PshBI | ATTAAT | 2 cut(s) | 599, 2546 |
| Psp124BI | GAGCTC | 2 cut(s) | 1490, 2611 |
| Psp5II | RGGWCCY | 1 cut(s) | 4154 |
| PspPI | GGNCC | 8 cut(s) | 213, 539, 926, 3607, 3986, 4154, 4225, 4628 |
| PspPPI | RGGWCCY | 1 cut(s) | 4154 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1933, 1965 |
| PstI | CTGCAG | 1 cut(s) | 3769 |
| PsuI | RGATCY | 4 cut(s) | 550, 1934, 4117, 5207 |
| PvuII | CAGCTG | 3 cut(s) | 2003, 3821, 4325 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1889, 2568 |
| SacI | GAGCTC | 2 cut(s) | 1490, 2611 |
| SapI | GCTCTTC | 2 cut(s) | 2330, 4372 |
| Sau96I | GGNCC | 8 cut(s) | 213, 539, 926, 3607, 3986, 4154, 4225, 4628 |
| ScaI | AGTACT | 1 cut(s) | 2397 |
| SchI | GAGTC | 4 cut(s) | 292, 1826, 2771, 2984 |
| SduI | GDGCHC | 7 cut(s) | 1131, 1490, 1886, 2342, 2611, 3496, 3873 |
| SexAI | ACCWGGT | 1 cut(s) | 2236 |
| SfcI | CTRYAG | 6 cut(s) | 2226, 2811, 3765, 3963, 4260, 4511 |
| SfuI | TTCGAA | 1 cut(s) | 1604 |
| SinI | GGWCC | 5 cut(s) | 213, 926, 3986, 4154, 4628 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1889, 2568 |
| SmlI | CTYRAG | 5 cut(s) | 1517, 1726, 1743, 2492, 2576 |
| SmoI | CTYRAG | 5 cut(s) | 1517, 1726, 1743, 2492, 2576 |
| SpeI | ACTAGT | 1 cut(s) | 3398 |
| SseBI | AGGCCT | 1 cut(s) | 3526 |
| SspI | AATATT | 3 cut(s) | 2017, 3657, 4029 |
| SstI | GAGCTC | 2 cut(s) | 1490, 2611 |
| StuI | AGGCCT | 1 cut(s) | 3526 |
| StyI | CCWWGG | 4 cut(s) | 523, 2199, 3152, 4345 |
| TaiI | ACGT | 3 cut(s) | 2054, 2333, 3499 |
| TatI | WGTACW | 7 cut(s) | 808, 1648, 1716, 1756, 2389, 2395, 5186 |
| TauI | GCSGC | 4 cut(s) | 2009, 2711, 4799, 4829 |
| TseFI | GTSAC | 4 cut(s) | 2763, 3784, 4168, 4435 |
| Tsp45I | GTSAC | 4 cut(s) | 2763, 3784, 4168, 4435 |
| TspGWI | ACGGA | 2 cut(s) | 373, 1248 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 4406, 4706, 5114 |
| Vha464I | CTTAAG | 1 cut(s) | 1726 |
| VneI | GTGCAC | 1 cut(s) | 3492 |
| VpaK11BI | GGWCC | 5 cut(s) | 213, 926, 3986, 4154, 4628 |
| VspI | ATTAAT | 2 cut(s) | 599, 2546 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 401, 3128 |
| XapI | RAATTY | 9 cut(s) | 1361, 2065, 2174, 2588, 3472, 3895, 3952, 4234, 4540 |
| XbaI | TCTAGA | 2 cut(s) | 409, 1228 |
| XceI | RCATGY | 1 cut(s) | 1004 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 223, 530, 5207 |
| XmiI | GTMKAC | 2 cut(s) | 2677, 4696 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2355 |
| ZraI | GACGTC | 1 cut(s) | 2052 |
| ZrmI | AGTACT | 1 cut(s) | 2397 |