Nuclear pore complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55540 AT1G55540 |
| fragaria_vesca | FvH4_3g45960 FvH4_3g45960 FvH4_3g45960 FvH4_3g45960 |
| malus_domestica | MD11G1001000.v1.1 |
| prunus_persica | Prupe.6G001200_v2.0.a1 Prupe.6G001200_v2.0.a1 Prupe.6G001200_v2.0.a1 Prupe.6G001200_v2.0.a1 |
| pyrus_communis | pycom11g00120 |
| rosa_chinensis | RchiOBHm_Chr5g0084071 |
| rosa_laevigata | RLG00000037079 |
| rosa_multiflora | Rmu_ssc0000372.1_g000089 |
| rosa_roxburghii | Rroxscaffold_1G00000590 |
| rosa_rugosa | Rorug05G0488900 |
| rosa_samantha | Rh5AG541500 Rh5BG566900 Rh5CG588800 Rh5DG575200 |
| rosa_wichuraiana | Rw5G050360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 5099 |
| AatII | GACGTC | 2 cut(s) | 2039, 5319 |
| Acc36I | ACCTGC | 1 cut(s) | 5099 |
| Acc65I | GGTACC | 2 cut(s) | 1336, 3406 |
| AccB1I | GGYRCC | 4 cut(s) | 1336, 3406, 3850, 4703 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 4373, 4673, 5051 |
| AccI | GTMKAC | 2 cut(s) | 1137, 4663 |
| AccII | CGCG | 1 cut(s) | 5321 |
| AcoI | YGGCCR | 3 cut(s) | 143, 4576, 5134 |
| AcyI | GRCGYC | 2 cut(s) | 2036, 5316 |
| AdeI | CACNNNGTG | 1 cut(s) | 4691 |
| AfeI | AGCGCT | 1 cut(s) | 2611 |
| AflII | CTTAAG | 1 cut(s) | 3431 |
| AhlI | ACTAGT | 1 cut(s) | 3380 |
| AjiI | CACGTC | 1 cut(s) | 3479 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1879, 1911, 5246, 5278 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 460, 492 |
| Alw21I | GWGCWC | 4 cut(s) | 2327, 2596, 3478, 5442 |
| Alw26I | GTCTC | 9 cut(s) | 47, 629, 899, 1499, 1765, 1766, 2967, 4073, 4639 |
| Alw44I | GTGCAC | 1 cut(s) | 3474 |
| Ama87I | CYCGRG | 1 cut(s) | 1370 |
| Aor51HI | AGCGCT | 1 cut(s) | 2611 |
| ApaLI | GTGCAC | 1 cut(s) | 3474 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 53, 85, 3344, 3376 |
| AseI | ATTAAT | 2 cut(s) | 599, 2531 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2340 |
| Asp718I | GGTACC | 2 cut(s) | 1336, 3406 |
| AspLEI | GCGC | 5 cut(s) | 2612, 2933, 4289, 5390, 5407 |
| AspS9I | GGNCC | 8 cut(s) | 213, 539, 926, 3589, 3968, 4136, 4595, 5399 |
| AsuC2I | CCSGG | 4 cut(s) | 142, 196, 4566, 5282 |
| AsuHPI | GGTGA | 3 cut(s) | 1191, 2591, 4677 |
| AsuNHI | GCTAGC | 1 cut(s) | 4712 |
| AvaI | CYCGRG | 1 cut(s) | 1370 |
| AvaII | GGWCC | 5 cut(s) | 213, 926, 3968, 4136, 4595 |
| BaeGI | GKGCMC | 3 cut(s) | 1871, 3478, 3855 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3933, 3966 |
| BalI | TGGCCA | 2 cut(s) | 4578, 5136 |
| BanI | GGYRCC | 4 cut(s) | 1336, 3406, 3850, 4703 |
| BanII | GRGCYC | 3 cut(s) | 1131, 2596, 5442 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2087, 2119 |
| BbsI | GAAGAC | 1 cut(s) | 169 |
| Bbv12I | GWGCWC | 4 cut(s) | 2327, 2596, 3478, 5442 |
| BceAI | ACGGC | 7 cut(s) | 74, 137, 184, 898, 2405, 3403, 3914 |
| BciVI | GTATCC | 2 cut(s) | 718, 3190 |
| BclI | TGATCA | 1 cut(s) | 2524 |
| BcnI | CCSGG | 4 cut(s) | 142, 196, 4566, 5282 |
| BcoDI | GTCTC | 9 cut(s) | 47, 629, 899, 1499, 1765, 1766, 2967, 4073, 4639 |
| BcuI | ACTAGT | 1 cut(s) | 3380 |
| BfmI | CTRYAG | 9 cut(s) | 357, 1341, 2211, 2691, 2796, 3747, 3945, 4227, 4478 |
| BfoI | RGCGCY | 2 cut(s) | 2613, 2934 |
| BfrI | CTTAAG | 1 cut(s) | 3431 |
| BfuAI | ACCTGC | 1 cut(s) | 5099 |
| BfuI | GTATCC | 2 cut(s) | 718, 3190 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 5105 |
| BlpI | GCTNAGC | 1 cut(s) | 4164 |
| Bme18I | GGWCC | 5 cut(s) | 213, 926, 3968, 4136, 4595 |
| BmeT110I | CYCGRG | 1 cut(s) | 1370 |
| BmgBI | CACGTC | 1 cut(s) | 3479 |
| BmgT120I | GGNCC | 8 cut(s) | 213, 539, 926, 3589, 3968, 4136, 4595, 5399 |
| BmiI | GGNNCC | 9 cut(s) | 1338, 2220, 3408, 3591, 3852, 4272, 4705, 5098, 5179 |
| BmrI | ACTGGG | 2 cut(s) | 2113, 3773 |
| BmtI | GCTAGC | 1 cut(s) | 4716 |
| BmuI | ACTGGG | 2 cut(s) | 2113, 3773 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3381 |
| BpiI | GAAGAC | 1 cut(s) | 169 |
| BpmI | CTGGAG | 8 cut(s) | 971, 2297, 2470, 3134, 3783, 5028, 5175, 5312 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4164 |
| BpuEI | CTTGAG | 5 cut(s) | 1502, 1713, 1732, 2498, 2582 |
| BpuMI | CCSGG | 4 cut(s) | 142, 196, 4566, 5282 |
| BsaHI | GRCGYC | 2 cut(s) | 2036, 5316 |
| BsaJI | CCNNGG | 6 cut(s) | 523, 2184, 3137, 4245, 4312, 4598 |
| BsaWI | WCCGGW | 3 cut(s) | 4751, 5180, 5455 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 33, 63, 365, 395, 1396, 1426, 5088, 5118 |
| Bse118I | RCCGGY | 1 cut(s) | 5401 |
| Bse3DI | GCAATG | 3 cut(s) | 751, 3425, 4707 |
| BseDI | CCNNGG | 6 cut(s) | 523, 2184, 3137, 4245, 4312, 4598 |
| BseMI | GCAATG | 3 cut(s) | 751, 3425, 4707 |
| BseMII | CTCAG | 8 cut(s) | 272, 1583, 1844, 2292, 4084, 4178, 4511, 4752 |
| BseRI | GAGGAG | 5 cut(s) | 968, 1046, 2980, 2983, 5228 |
| BseSI | GKGCMC | 3 cut(s) | 1871, 3478, 3855 |
| BseYI | CCCAGC | 6 cut(s) | 1375, 2991, 3226, 4931, 4961, 5063 |
| BsgI | GTGCAG | 6 cut(s) | 1643, 4071, 4878, 4998, 5028, 5058 |
| Bsh1236I | CGCG | 1 cut(s) | 5321 |
| BshNI | GGYRCC | 4 cut(s) | 1336, 3406, 3850, 4703 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2327, 2596, 3478, 5442 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1370 |
| BsiSI | CCGG | 8 cut(s) | 142, 195, 4565, 4752, 5181, 5282, 5402, 5456 |
| BslFI | GGGAC | 4 cut(s) | 120, 1721, 2456, 3660 |
| BsmAI | GTCTC | 9 cut(s) | 47, 629, 899, 1499, 1765, 1766, 2967, 4073, 4639 |
| BsmBI | CGTCTC | 1 cut(s) | 47 |
| BsmFI | GGGAC | 4 cut(s) | 120, 1721, 2456, 3660 |
| BsmI | GAATGC | 5 cut(s) | 994, 1209, 2632, 3189, 4246 |
| BsoBI | CYCGRG | 1 cut(s) | 1370 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1131, 1871, 2327, 2596, 3478, 3855, 5442 |
| Bsp1407I | TGTACA | 2 cut(s) | 808, 2374 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4164 |
| Bsp19I | CCATGG | 2 cut(s) | 523, 3137 |
| BspCNI | CTCAG | 8 cut(s) | 273, 1582, 1843, 2293, 4083, 4177, 4510, 4751 |
| BspFNI | CGCG | 1 cut(s) | 5321 |
| BspHI | TCATGA | 2 cut(s) | 2344, 4422 |
| BspLI | GGNNCC | 9 cut(s) | 1338, 2220, 3408, 3591, 3852, 4272, 4705, 5098, 5179 |
| BspMAI | CTGCAG | 2 cut(s) | 361, 2695 |
| BspMI | ACCTGC | 1 cut(s) | 5099 |
| BspOI | GCTAGC | 1 cut(s) | 4716 |
| BspQI | GCTCTTC | 2 cut(s) | 2315, 4339 |
| BspT107I | GGYRCC | 4 cut(s) | 1336, 3406, 3850, 4703 |
| BspTI | CTTAAG | 1 cut(s) | 3431 |
| BsrDI | GCAATG | 3 cut(s) | 751, 3425, 4707 |
| BsrFI | RCCGGY | 1 cut(s) | 5401 |
| BsrGI | TGTACA | 2 cut(s) | 808, 2374 |
| BssAI | RCCGGY | 1 cut(s) | 5401 |
| BssECI | CCNNGG | 6 cut(s) | 523, 2184, 3137, 4245, 4312, 4598 |
| BssNI | GRCGYC | 2 cut(s) | 2036, 5316 |
| BssT1I | CCWWGG | 4 cut(s) | 523, 2184, 3137, 4312 |
| Bst6I | CTCTTC | 7 cut(s) | 1311, 2315, 2480, 4260, 4339, 5301, 5408 |
| BstACI | GRCGYC | 2 cut(s) | 2036, 5316 |
| BstAFI | CTTAAG | 1 cut(s) | 3431 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 356, 974, 5075 |
| BstAUI | TGTACA | 2 cut(s) | 808, 2374 |
| BstDSI | CCRYGG | 2 cut(s) | 523, 3137 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 401, 3113 |
| BstFNI | CGCG | 1 cut(s) | 5321 |
| BstH2I | RGCGCY | 2 cut(s) | 2613, 2934 |
| BstHHI | GCGC | 5 cut(s) | 2612, 2933, 4289, 5390, 5407 |
| BstMAI | GTCTC | 9 cut(s) | 47, 629, 899, 1499, 1765, 1766, 2967, 4073, 4639 |
| BstNSI | RCATGY | 1 cut(s) | 1004 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3381 |
| BstSFI | CTRYAG | 9 cut(s) | 357, 1341, 2211, 2691, 2796, 3747, 3945, 4227, 4478 |
| BstSLI | GKGCMC | 3 cut(s) | 1871, 3478, 3855 |
| BstUI | CGCG | 1 cut(s) | 5321 |
| BstV2I | GAAGAC | 1 cut(s) | 169 |
| BstX2I | RGATCY | 4 cut(s) | 550, 4099, 5144, 5287 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2191, 3448 |
| BstYI | RGATCY | 4 cut(s) | 550, 4099, 5144, 5287 |
| BsuI | GTATCC | 2 cut(s) | 718, 3190 |
| BtgI | CCRYGG | 2 cut(s) | 523, 3137 |
| BtrI | CACGTC | 1 cut(s) | 3479 |
| BtsI | GCAGTG | 2 cut(s) | 1762, 5414 |
| BveI | ACCTGC | 1 cut(s) | 5099 |
| CciI | TCATGA | 2 cut(s) | 2344, 4422 |
| CfoI | GCGC | 5 cut(s) | 2612, 2933, 4289, 5390, 5407 |
| Cfr10I | RCCGGY | 1 cut(s) | 5401 |
| Cfr13I | GGNCC | 8 cut(s) | 213, 539, 926, 3589, 3968, 4136, 4595, 5399 |
| CsiI | ACCWGGT | 1 cut(s) | 2221 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4549, 4584 |
| DraI | TTTAAA | 1 cut(s) | 1579 |
| DraIII | CACNNNGTG | 1 cut(s) | 4691 |
| EaeI | YGGCCR | 3 cut(s) | 143, 4576, 5134 |
| Eam1104I | CTCTTC | 7 cut(s) | 1311, 2315, 2480, 4260, 4339, 5301, 5408 |
| EarI | CTCTTC | 7 cut(s) | 1311, 2315, 2480, 4260, 4339, 5301, 5408 |
| EciI | GGCGGA | 2 cut(s) | 223, 5300 |
| Ecl136II | GAGCTC | 2 cut(s) | 2594, 5440 |
| Eco130I | CCWWGG | 4 cut(s) | 523, 2184, 3137, 4312 |
| Eco147I | AGGCCT | 1 cut(s) | 3508 |
| Eco24I | GRGCYC | 3 cut(s) | 1131, 2596, 5442 |
| Eco32I | GATATC | 1 cut(s) | 46 |
| Eco47I | GGWCC | 5 cut(s) | 213, 926, 3968, 4136, 4595 |
| Eco47III | AGCGCT | 1 cut(s) | 2611 |
| Eco53kI | GAGCTC | 2 cut(s) | 2594, 5440 |
| Eco88I | CYCGRG | 1 cut(s) | 1370 |
| EcoICRI | GAGCTC | 2 cut(s) | 2594, 5440 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 401, 3113 |
| EcoO109I | RGGNCCY | 1 cut(s) | 4136 |
| EcoRI | GAATTC | 3 cut(s) | 2467, 3934, 5381 |
| EcoRV | GATATC | 1 cut(s) | 46 |
| EcoT14I | CCWWGG | 4 cut(s) | 523, 2184, 3137, 4312 |
| EcoT38I | GRGCYC | 3 cut(s) | 1131, 2596, 5442 |
| ErhI | CCWWGG | 4 cut(s) | 523, 2184, 3137, 4312 |
| Esp3I | CGTCTC | 1 cut(s) | 47 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 250, 282, 913, 945, 1443, 1475, 1611, 1643 |
| FaqI | GGGAC | 4 cut(s) | 120, 1721, 2456, 3660 |
| FauI | CCCGC | 1 cut(s) | 5078 |
| FbaI | TGATCA | 1 cut(s) | 2524 |
| FblI | GTMKAC | 2 cut(s) | 1137, 4663 |
| FriOI | GRGCYC | 3 cut(s) | 1131, 2596, 5442 |
| GlaI | GCGC | 5 cut(s) | 2611, 2932, 4288, 5389, 5406 |
| GsaI | CCCAGC | 6 cut(s) | 1379, 2995, 3230, 4935, 4965, 5067 |
| GsuI | CTGGAG | 8 cut(s) | 971, 2297, 2470, 3134, 3783, 5028, 5175, 5312 |
| HaeII | RGCGCY | 2 cut(s) | 2613, 2934 |
| HapII | CCGG | 8 cut(s) | 142, 195, 4565, 4752, 5181, 5282, 5402, 5456 |
| HhaI | GCGC | 5 cut(s) | 2612, 2933, 4289, 5390, 5407 |
| Hin1I | GRCGYC | 2 cut(s) | 2036, 5316 |
| Hin6I | GCGC | 5 cut(s) | 2610, 2931, 4287, 5388, 5405 |
| HinP1I | GCGC | 5 cut(s) | 2610, 2931, 4287, 5388, 5405 |
| HincII | GTYRAC | 1 cut(s) | 1942 |
| HindII | GTYRAC | 1 cut(s) | 1942 |
| HindIII | AAGCTT | 3 cut(s) | 1397, 2421, 5256 |
| HpaI | GTTAAC | 1 cut(s) | 1942 |
| HpaII | CCGG | 8 cut(s) | 142, 195, 4565, 4752, 5181, 5282, 5402, 5456 |
| HphI | GGTGA | 3 cut(s) | 1191, 2591, 4677 |
| Hpy99I | CGWCG | 4 cut(s) | 185, 389, 5318, 5321 |
| HpyCH4IV | ACGT | 4 cut(s) | 2036, 2315, 3478, 5316 |
| HpySE526I | ACGT | 4 cut(s) | 2036, 2315, 3478, 5316 |
| Hsp92I | GRCGYC | 2 cut(s) | 2036, 5316 |
| HspAI | GCGC | 5 cut(s) | 2610, 2931, 4287, 5388, 5405 |
| KpnI | GGTACC | 2 cut(s) | 1340, 3410 |
| KroI | GCCGGC | 1 cut(s) | 5401 |
| KroNI | GCCGGC | 1 cut(s) | 5403 |
| Ksp22I | TGATCA | 1 cut(s) | 2524 |
| KspAI | GTTAAC | 1 cut(s) | 1942 |
| LguI | GCTCTTC | 2 cut(s) | 2315, 4339 |
| MabI | ACCWGGT | 1 cut(s) | 2221 |
| MaeII | ACGT | 4 cut(s) | 2036, 2315, 3478, 5316 |
| MaeIII | GTNAC | 7 cut(s) | 1037, 1273, 1538, 3127, 3766, 4150, 4402 |
| MfeI | CAATTG | 1 cut(s) | 2058 |
| MflI | RGATCY | 4 cut(s) | 550, 4099, 5144, 5287 |
| MhlI | GDGCHC | 7 cut(s) | 1131, 1871, 2327, 2596, 3478, 3855, 5442 |
| MlsI | TGGCCA | 2 cut(s) | 4578, 5136 |
| MluNI | TGGCCA | 2 cut(s) | 4578, 5136 |
| MlyI | GAGTC | 4 cut(s) | 292, 1811, 2756, 2969 |
| MmeI | TCCRAC | 6 cut(s) | 1910, 2172, 2269, 2377, 3506, 4573 |
| Mox20I | TGGCCA | 2 cut(s) | 4578, 5136 |
| MroNI | GCCGGC | 1 cut(s) | 5401 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2340 |
| MscI | TGGCCA | 2 cut(s) | 4578, 5136 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2553 |
| Msp20I | TGGCCA | 2 cut(s) | 4578, 5136 |
| MspA1I | CMGCKG | 2 cut(s) | 1988, 4292 |
| MspCI | CTTAAG | 1 cut(s) | 3431 |
| MspI | CCGG | 8 cut(s) | 142, 195, 4565, 4752, 5181, 5282, 5402, 5456 |
| MunI | CAATTG | 1 cut(s) | 2058 |
| Mva1269I | GAATGC | 5 cut(s) | 994, 1209, 2632, 3189, 4246 |
| MvnI | CGCG | 1 cut(s) | 5321 |
| NaeI | GCCGGC | 1 cut(s) | 5403 |
| NciI | CCSGG | 4 cut(s) | 142, 196, 4566, 5282 |
| NcoI | CCATGG | 2 cut(s) | 523, 3137 |
| NgoMIV | GCCGGC | 1 cut(s) | 5401 |
| NheI | GCTAGC | 1 cut(s) | 4712 |
| NlaIV | GGNNCC | 9 cut(s) | 1338, 2220, 3408, 3591, 3852, 4272, 4705, 5098, 5179 |
| NmeAIII | GCCGAG | 1 cut(s) | 265 |
| NmuCI | GTSAC | 3 cut(s) | 3766, 4150, 4402 |
| NspI | RCATGY | 1 cut(s) | 1004 |
| PacI | TTAATTAA | 1 cut(s) | 2535 |
| PagI | TCATGA | 2 cut(s) | 2344, 4422 |
| PaqCI | CACCTGC | 1 cut(s) | 5099 |
| PceI | AGGCCT | 1 cut(s) | 3508 |
| PciSI | GCTCTTC | 2 cut(s) | 2315, 4339 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PctI | GAATGC | 5 cut(s) | 994, 1209, 2632, 3189, 4246 |
| PdiI | GCCGGC | 1 cut(s) | 5403 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2340 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 4373, 4673, 5051 |
| PfoI | TCCNGGA | 2 cut(s) | 396, 683 |
| PleI | GAGTC | 4 cut(s) | 291, 1810, 2755, 2969 |
| PpsI | GAGTC | 4 cut(s) | 291, 1810, 2755, 2969 |
| PpuMI | RGGWCCY | 1 cut(s) | 4136 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3381 |
| PshBI | ATTAAT | 2 cut(s) | 599, 2531 |
| Psp124BI | GAGCTC | 2 cut(s) | 2596, 5442 |
| Psp5II | RGGWCCY | 1 cut(s) | 4136 |
| PspFI | CCCAGC | 6 cut(s) | 1375, 2991, 3226, 4931, 4961, 5063 |
| PspN4I | GGNNCC | 9 cut(s) | 1338, 2220, 3408, 3591, 3852, 4272, 4705, 5098, 5179 |
| PspPI | GGNCC | 8 cut(s) | 213, 539, 926, 3589, 3968, 4136, 4595, 5399 |
| PspPPI | RGGWCCY | 1 cut(s) | 4136 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1918, 1950 |
| PstI | CTGCAG | 2 cut(s) | 361, 2695 |
| PsuI | RGATCY | 4 cut(s) | 550, 4099, 5144, 5287 |
| PvuII | CAGCTG | 2 cut(s) | 1988, 4292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2553 |
| SacI | GAGCTC | 2 cut(s) | 2596, 5442 |
| SapI | GCTCTTC | 2 cut(s) | 2315, 4339 |
| Sau96I | GGNCC | 8 cut(s) | 213, 539, 926, 3589, 3968, 4136, 4595, 5399 |
| SchI | GAGTC | 4 cut(s) | 292, 1811, 2756, 2969 |
| SduI | GDGCHC | 7 cut(s) | 1131, 1871, 2327, 2596, 3478, 3855, 5442 |
| SexAI | ACCWGGT | 1 cut(s) | 2221 |
| SfcI | CTRYAG | 9 cut(s) | 357, 1341, 2211, 2691, 2796, 3747, 3945, 4227, 4478 |
| SinI | GGWCC | 5 cut(s) | 213, 926, 3968, 4136, 4595 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2553 |
| SmlI | CTYRAG | 6 cut(s) | 1517, 1711, 1728, 2477, 2561, 3431 |
| SmoI | CTYRAG | 6 cut(s) | 1517, 1711, 1728, 2477, 2561, 3431 |
| SpeI | ACTAGT | 1 cut(s) | 3380 |
| SseBI | AGGCCT | 1 cut(s) | 3508 |
| SspI | AATATT | 2 cut(s) | 2002, 4011 |
| SstI | GAGCTC | 2 cut(s) | 2596, 5442 |
| StuI | AGGCCT | 1 cut(s) | 3508 |
| StyI | CCWWGG | 4 cut(s) | 523, 2184, 3137, 4312 |
| TaiI | ACGT | 4 cut(s) | 2039, 2318, 3481, 5319 |
| TatI | WGTACW | 4 cut(s) | 808, 1633, 1741, 2374 |
| TauI | GCSGC | 6 cut(s) | 239, 1994, 4766, 4796, 5324, 5452 |
| TseFI | GTSAC | 3 cut(s) | 3766, 4150, 4402 |
| Tsp45I | GTSAC | 3 cut(s) | 3766, 4150, 4402 |
| TspGWI | ACGGA | 5 cut(s) | 373, 1248, 1421, 2189, 5344 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 4373, 4673, 5051 |
| Vha464I | CTTAAG | 1 cut(s) | 3431 |
| VneI | GTGCAC | 1 cut(s) | 3474 |
| VpaK11BI | GGWCC | 5 cut(s) | 213, 926, 3968, 4136, 4595 |
| VspI | ATTAAT | 2 cut(s) | 599, 2531 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 401, 3113 |
| XbaI | TCTAGA | 1 cut(s) | 409 |
| XceI | RCATGY | 1 cut(s) | 1004 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 223, 530, 5144 |
| XmiI | GTMKAC | 2 cut(s) | 1137, 4663 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2340 |
| ZraI | GACGTC | 2 cut(s) | 2037, 5317 |