Rroxscaffold_1G00000590

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
1034000 .. 1044696
10697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000590.1

Sequence Viewer

Length: 5280 bp
ATGACTAAGAAAATAGTTGAACTTGAAGAAGAAATTGAAGGAGATATCGTAGAGACAAACGACTACATATTTGATAAGATCGGCGAGGCCGTTCCAATCAAGAGTGATGGTTTCAGTTTCGATCCCCAAAGCAGTCCCTCCCGGCCACTCGCCGTATCGGAGAAACACGGCCTCGTCTTCGTCGCTCATTCATCCGGGTTTCTCGTTGCGAGGACCAAAGATGTTATGGCTTCCGCCGCCGAGATTAAGGAAAAGGGAAGCTCTGCTTCTATACAGGAACTGAGTCTTGTGGATGTTCCCCTCCCCAACCTTCACATTCTCGCACTATCTACCGATAATTCTACTCTTGCAGCTACTGCAGATGCCGACATTCACTTCTTCTCCGTCGGCTCTCTCCTGGATAAGGGTCTAGAACTATCTTATTCTTGCTCACTCAATGAATCCAGCTCTGTCAAGGATATTCAGTGGACAAAAAGTTCTGAAAATATGTATTTGGTTCTTTCAAATCTTGGAAAGCTATACCATGGAACGATTGGTGGCCCTGTGAAGGATCTAATGGACAATGTTGATGCTGTTGAATGGAGTTCAAAAGGAAAATTAATTGCTGTGGCAAGGAAGGATACTCTCAACATTTTATCATCTAACTTCATTGAGAAGTCGTCTATGCTACTTTCGTTCAAGTCCTGGATCGGTGATCCTGACACAAACTGCATCGTAAAAGTGGATACAATCAGGTGGGTTCGCAATGATAGCATCATTTTAGGATGCTTTCAACTGAATGCAGATGGGAATGAAGAAAATTACCTTGTACAAGTAATACAAATCAATGATGGCAAGTTTACTAATGATTCCTGCAAGCCAGTTGTTATATCTTTCTATGATTTGTTTTCATGTCTCATTGATGACATTTTGCCGTCTGGAAGTGGACCTTACTTATTATTGAGCTATCTGGAGGAGTGTGAACTTGCAATAACTGCTAACAGGAAGAATGCGGATCAGCATGTTGTATATCTTAGTTGGTCGCTAGGAGAGGAGAGTAACGGAGCTGTAATTGTTGATATTGTACGAGATAATTTGAAACCAAGAATTGAGCTTCAAGAAAATGGTGATGATAATTTGATTATGGGGCTCTGCGTAGACAAGAGTTCAATAAGCCAGAAAGTTAGTGTCAGACTTGGATTGGAACAGAGAGAACTCTCACCATACTGCATTCTGATTTGTCTTACACTAGACGGAAAGCTAATTATGTACCATGTTGCCAGTGTTAGTGATGTTACAGTTAAGCCTGCTAGTGTTTCTAGTGTTTCTGATGAGGAAGAGGATTCTACTGCATTGGTACCTGTAGGATGTGAACCAGCTAAATTTTCTCCCGAGCTGGGGAAGGAACAATTTGGAAAGCTTGCTACGGATGCTCCTTTGCTTAATAAGAACATAAAGGAACTTGACAGAAAAGTAGGTCTTGATGTCCTTACAAAAGATGACAAGAACTCTCTTAGTGTAAATGAGACTTCGATGCTCAAGGAAGAAAGTACCAACAGTAACAAGAAAGTGGAGTTTTCAGCAAGTTCTCAATCATTTAAAGGTCAACAAGAACTTATTTTTTCGAACCCCTACTCAAATAAAAATGGTAAACAAGTGCAGCTTCCTGTACTGGAAAATAGAGATATACAACACGCATCTACTGATTCTTTTTCCCAAGACGGGCATAGTCTTGTGTTCAGGGACTTGAGCAAGATAGGAACTCAAGAAAATGCTGTACTTGCAACTAGCAGTGTCTCTTTTGTTGAGACAGGAGTAAAATCTCTAGGAAAAATGGAGTCAACAGATTTACAGAGGGTTTCATCTCAGTCCTGGTCAAGTGGAAAAATCATAACTTCAAAGGGCACTGATGTGAAATCTCCAACTTTGCCTTCAACTTTTATTCAAGGTAGCAGATCTGGAACATCAACTACCGTTAACTTTTCTGGTATGCCGGTTGAGAATAGGGGAAGGAGACCATCAGCTGCGGCTGGAAATATTGCATCAGTACCTCCCATTTCTGGCTTCCAGACGTCATCACAGGAAAATTTCTCGATTGGCAAGTCTTTTAACCACAAGATTCATCCATTGAAGGAAAATTACAGTGAACTCCCCCAGTCAAGAATGCCGAACTCTGAACCAAGTTTATCAAAAAAATTTGGCAATATAACGGAGATGACCAAGGAGTTGGATATGTTCCTACAATCTATAGAGGAACCAGGTGGTTTCAGGGATGCCTGCATTGTTAGTCAGAAAAGTTCTGTTGAAGAACTGGAGAGAGAGGTTGGCGTTCTGTCTGAGAGATGCCGAACGTGGAAGAGCACTCTGGATGAACGACTTCATGAAGTCCAACATCTTTTTGACATGACTGTACAAGTGCTGGCACGGAAAATATACATGGAGGGGATTGTGAAACAAGCTTCTGATAGCCGATATTGGGACTTCTGGAGTTGTCAGAAATTGAATTCAGAACTTGAGCTGAAGAGGCGACATATTTCAAAAATGAATCAGGATTTGACTGATCAATTAATTAAATTGGAAAGGCATTTTAATGGCCTTGAGCTTAACAAATTTGGTGAAAATGATGGAGCTCATACTGGTCGAAGCGCTTTGCAAAGTCAATTTGGGCATTCAAGGCATATTCAGTCCTTGCATAGTCTACATAGCACAATGACTTCACAATTAGCTGCAGCCGATCAACTTTCTGAGTGTCTATCAAAACAAATGGTGGCACTAAAGATTGAGTCACCTTCTGCAAAACAGAAGAATGTGAAAAAAGAGTTGTTTGAAACCATAGGGATTCCTTATGATGCCTCTTTCAGTTCCCCTTCCCCAGATGTGTCGAAGTTTCGTGGTACTCCAAAAGAGAAACTATCGTTATCTTTGGGTTCATCTGCTGCTAAAGATCAAACCAGGAGAAATGCGAGCGCCATGAAGAATTATGAACCAGAAACTGCAAGGAGGAGGAGAGACTCACTGGATAGGAGCTGGGCAAATTATGAGCCTACAAAAGCCACTGTGAAAAGGTTGCTTTTGCAAGAAAGTGGAAAGGTAAGTGTGAATAGATCATCATTATCAGTTGATAAGCAACGCATTAGCTCTCGCCTGCTGGAGGGATCAACCGTTGCTCGTCCATGGGATCACACAATGCCTGCAACATTCTTTCATCCATCTGAAAACAAAGGCATTCAGGATACACACTCAAAACAGGCTTTGGAAACCCCAGCAACTCCATTTGTTTTGCGTAAAGAATCAGTAAGGCAAAATCTTTTGAGGGAAACTAACATGACAGCAGAAAAATCTGGCGAGGGCATAACATCTGTTAAGAAGTCTGAATCAGTTTCTGCGAAGGAAAAGTCTGTTTTGCCATCAGACACTAGTCAGAAACTATCAACTTTTATGGTACCTACACAGCCGTCCTCATTGCTTAAGAAACCCAATGATATGGTATATTCATATACCAAAGAGAGTGCACGTCTGACAGAACAGAGTGTGAAGGACAGGCCTTTGAACACAACAGTTCCATCTCTGGAATCTGGGAAAAAATATAATTCTCCACTCTCTCCCTCATTTCCTGTTTCTGTGGCCCCTTCTGCCACATTCTCAATGTCAGTTTCGGCATCCACATCTTCAATATTTAGTTCATCATCAGCTCTATTGTCTTTATCAAGTCCCTCATCAGCTTCTCCTAACTTGTCCTCTGTGATGCCTTCAAACAGATCGTTGGCTCACTCAAACAATACTGCAGATATGAATAAACCTGTCACAACATCCCCAGTATCAGCTTTTCCCTCTCCAGTTGTTCTGCCTTCTGGTTCTTTCTTACTGAATGTTTCAAAATCACTGGTGCCCTCTGACATTTCGCCTGCGACAAATTCAGCATTAGAATCTCCAAAACAAGAGATTCAACCTTCCTCAAAGACCGCCGTGAATTCTAATACTATAGTACCACCAGTGGAATCTGGACCTTCCCCTGTCGAAACTAATTTGAATCTCAAACCTTCAATATTGCCTCCCCTTACAGTTGAAACTTCAACAGGACTAGCACCTGGAAATCAGTCCAGTCTCAGCAATTCTAGTCCTGCACCAGTAGTGGATCCTGGAAGCCAAACCAGTTTGAAGAATACATCAGGTCCTACACTTAATGTGACTGTAAATGCTCAGCATGAACAGACATCTGCTGGACAATCTCTATTACCATTAGCCCTCTCAAATTCAGGGAGTGTTAATAGTAGGACTGTAGATGTCCAGAATGCCCAGGAGGATGACATGGATGAAGAGGCTCCTGACACAAGTAGCGCAGCTGGACTTAATTTAGGAAGCCTTGGTGCATTTGGGCTTGGCTCTTCCCCGAACCCAACTGCTGTTAAACCCAATCCGTTTGGTGGAACATTTGGTAATGCAGCAACAAATGTGACAACTTCGCCTTTCCCCATGACTGTTCCTAGTGGAGAGTTGTTTCAGCCTGCATCTCTTAACTTCCAATCTCTACAGCCTTCTCCATCATCTCAGCCAAAAAATTCAGGTGCATTTGCTGGTGGGTTTGGCACTGGTACTACTGCCCAACCTTCCAATCCGAGTGGGTTTGGTCAGCCATCACAGGTTGGACCAGGGCAGCAAGCATTAGGATCAGTTCTGGGTGCTTTTGGACAGTCAAGACAGCTTGGTACTGGTCTACCAGGAACTGGTTTTGGATCACCTAGTGGTTTTGGAGGTGCCGTTGCTAGCAATAAACCTCCTGGTGGTTTCTCAGGTGCTGCTACCGGAGGATTTGCAGCTGTGGCTTCTGGTGGTGGTGGATTTGCGGCTGTGGCTTCTGGTGGTGGTGGATTTGCTGCTTTGGCTTCAGGGGGTGGGGGTTTTGGTGGTGCAGCTTCAGGGGGTGGGGGTTTTGGCGGTGCAGCTTCAGGGGTTGGGGGTTTTGGCGGTGCAGCTTCAGGGGCTGGGGGTTTTGGCGGTGCAGCTCCAGGGGCTTCAGGTTTTGGTGGTGCAGCTCCAGGTGGTGGCGGTTTTGCTGGGGCAGCAGCTGCTGGTAGCGGGTTTGCAGGAGCCAATGTGGCAGGTGGTGGATTTAGTACATTTGGTGGCCAGCAAGGATCTGGTGGTTTCTCTGCTTTTGGTAGTGGAGGAACCGGAAAGCCTCCAGATTTGTTCCAGATGAGAAAGAAGATGAGAAACTCCCGTGGGAAACAGTCGGAGTGGGTACCAGTGAGGATTAAAATGCAGACAACAATGAAGCGAACCATTGTTCCAAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1759

Amino Acids

186.09

Weight (kDa)

6.23

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 5069
AatII GACGTC 1 cut(s) 2054
Acc36I ACCTGC 1 cut(s) 5069
Acc65I GGTACC 3 cut(s) 1336, 3421, 5221
AccB1I GGYRCC 5 cut(s) 1336, 3421, 3865, 4733, 5221
AccB7I CCANNNNNTGG 2 cut(s) 4703, 5021
AccI GTMKAC 3 cut(s) 1137, 2677, 4693
AcoI YGGCCR 2 cut(s) 143, 5104
AcsI RAATTY 9 cut(s) 1361, 2065, 2174, 2482, 2588, 3892, 3949, 4231, 4537
AcuI CTGAAG 6 cut(s) 2519, 4848, 4878, 4908, 4938, 4977
AcyI GRCGYC 1 cut(s) 2051
AdeI CACNNNGTG 1 cut(s) 4721
AfeI AGCGCT 1 cut(s) 2626
AflII CTTAAG 1 cut(s) 3446
AhlI ACTAGT 1 cut(s) 3395
AjiI CACGTC 1 cut(s) 3494
AjuI GAANNNNNNNTTGG 2 cut(s) 1894, 1926
AleI CACNNNNGTG 1 cut(s) 1889
AloI GAACNNNNNNTCC 3 cut(s) 460, 492, 5251
Alw21I GWGCWC 3 cut(s) 2342, 2611, 3493
Alw26I GTCTC 8 cut(s) 47, 899, 1499, 1780, 1781, 1987, 2982, 4088
Alw44I GTGCAC 1 cut(s) 3489
AlwNI CAGNNNCTG 9 cut(s) 280, 356, 2972, 3362, 4703, 4775, 4961, 5045, 5048
Ama87I CYCGRG 1 cut(s) 1370
Aor51HI AGCGCT 1 cut(s) 2626
AoxI GGCC 8 cut(s) 87, 143, 169, 538, 2572, 3521, 3603, 5104
ApaLI GTGCAC 1 cut(s) 3489
ApoI RAATTY 9 cut(s) 1361, 2065, 2174, 2482, 2588, 3892, 3949, 4231, 4537
ArsI GACNNNNNNTTYG 4 cut(s) 53, 85, 3359, 3391
AseI ATTAAT 2 cut(s) 599, 2546
Asp700I GAANNNNTTC 1 cut(s) 2355
Asp718I GGTACC 3 cut(s) 1336, 3421, 5221
AspLEI GCGC 3 cut(s) 2627, 2948, 4319
AspS9I GGNCC 7 cut(s) 213, 539, 926, 3604, 3983, 4151, 4625
AsuC2I CCSGG 2 cut(s) 142, 196
AsuHPI GGTGA 6 cut(s) 704, 1118, 1191, 2606, 2757, 4707
AsuII TTCGAA 1 cut(s) 1604
AsuNHI GCTAGC 1 cut(s) 4742
AvaI CYCGRG 1 cut(s) 1370
AvaII GGWCC 5 cut(s) 213, 926, 3983, 4151, 4625
BaeGI GKGCMC 3 cut(s) 1886, 3493, 3870
BaeI ACNNNNGTAYC 2 cut(s) 3948, 3981
BalI TGGCCA 1 cut(s) 5106
BamHI GGATCC 1 cut(s) 4114
BanI GGYRCC 5 cut(s) 1336, 3421, 3865, 4733, 5221
BanII GRGCYC 2 cut(s) 1131, 2611
BarI GAAGNNNNNNTAC 2 cut(s) 2102, 2134
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 3 cut(s) 2342, 2611, 3493
BceAI ACGGC 7 cut(s) 74, 137, 184, 898, 3418, 3929, 4721
BciVI GTATCC 3 cut(s) 613, 718, 3205
BclI TGATCA 1 cut(s) 2539
BcnI CCSGG 2 cut(s) 142, 196
BcoDI GTCTC 8 cut(s) 47, 899, 1499, 1780, 1781, 1987, 2982, 4088
BcuI ACTAGT 1 cut(s) 3395
BfmI CTRYAG 8 cut(s) 357, 1341, 2226, 2706, 3762, 3960, 4257, 4508
BfoI RGCGCY 2 cut(s) 2628, 2949
BfrI CTTAAG 1 cut(s) 3446
BfuAI ACCTGC 1 cut(s) 5069
BfuI GTATCC 3 cut(s) 613, 718, 3205
BglI GCCNNNNNGGC 1 cut(s) 5075
BglII AGATCT 1 cut(s) 1934
BlpI GCTNAGC 1 cut(s) 4179
Bme18I GGWCC 5 cut(s) 213, 926, 3983, 4151, 4625
BmeT110I CYCGRG 1 cut(s) 1370
BmgBI CACGTC 1 cut(s) 3494
BmgT120I GGNCC 7 cut(s) 213, 539, 926, 3604, 3983, 4151, 4625
BmrI ACTGGG 2 cut(s) 2128, 3788
BmtI GCTAGC 1 cut(s) 4746
BmuI ACTGGG 2 cut(s) 2128, 3788
BoxI GACNNNNGTC 1 cut(s) 3396
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 8 cut(s) 971, 2312, 2485, 3149, 3798, 4968, 4998, 5145
Bpu1102I GCTNAGC 1 cut(s) 4179
Bpu14I TTCGAA 1 cut(s) 1604
BpuEI CTTGAG 5 cut(s) 1502, 1728, 1747, 2513, 2597
BpuMI CCSGG 2 cut(s) 142, 196
BsaHI GRCGYC 1 cut(s) 2051
BsaI GGTCTC 1 cut(s) 1987
BsaJI CCNNGG 8 cut(s) 523, 2199, 3152, 4275, 4342, 4628, 4985, 5200
BsaWI WCCGGW 2 cut(s) 4781, 5150
Bse118I RCCGGY 1 cut(s) 1972
Bse3DI GCAATG 2 cut(s) 751, 3440
BseDI CCNNGG 8 cut(s) 523, 2199, 3152, 4275, 4342, 4628, 4985, 5200
BseMI GCAATG 2 cut(s) 751, 3440
BseMII CTCAG 8 cut(s) 272, 1859, 2307, 2715, 4099, 4193, 4541, 4782
BseRI GAGGAG 4 cut(s) 968, 1046, 2995, 2998
BseSI GKGCMC 3 cut(s) 1886, 3493, 3870
BseYI CCCAGC 5 cut(s) 1375, 3006, 3241, 4961, 5033
BsgI GTGCAG 7 cut(s) 1658, 4086, 4908, 4938, 4968, 4998, 5028
BshFI GGCC 8 cut(s) 89, 145, 171, 540, 2574, 3523, 3605, 5106
BshNI GGYRCC 5 cut(s) 1336, 3421, 3865, 4733, 5221
BsiHKAI GWGCWC 3 cut(s) 2342, 2611, 3493
BsiHKCI CYCGRG 1 cut(s) 1370
BsiSI CCGG 5 cut(s) 142, 195, 1973, 4782, 5151
BslFI GGGAC 4 cut(s) 120, 1736, 2471, 3675
BsmAI GTCTC 8 cut(s) 47, 899, 1499, 1780, 1781, 1987, 2982, 4088
BsmFI GGGAC 4 cut(s) 120, 1736, 2471, 3675
BsmI GAATGC 7 cut(s) 784, 994, 1209, 2148, 2647, 3204, 4276
BsnI GGCC 8 cut(s) 89, 145, 171, 540, 2574, 3523, 3605, 5106
Bso31I GGTCTC 1 cut(s) 1987
BsoBI CYCGRG 1 cut(s) 1370
Bsp119I TTCGAA 1 cut(s) 1604
Bsp1286I GDGCHC 6 cut(s) 1131, 1886, 2342, 2611, 3493, 3870
Bsp1407I TGTACA 2 cut(s) 808, 2389
Bsp1720I GCTNAGC 1 cut(s) 4179
Bsp19I CCATGG 2 cut(s) 523, 3152
BspANI GGCC 8 cut(s) 89, 145, 171, 540, 2574, 3523, 3605, 5106
BspCNI CTCAG 8 cut(s) 273, 1858, 2308, 2716, 4098, 4192, 4540, 4781
BspHI TCATGA 1 cut(s) 2359
BspMAI CTGCAG 3 cut(s) 361, 2710, 3766
BspMI ACCTGC 1 cut(s) 5069
BspOI GCTAGC 1 cut(s) 4746
BspQI GCTCTTC 2 cut(s) 2330, 4369
BspT104I TTCGAA 1 cut(s) 1604
BspT107I GGYRCC 5 cut(s) 1336, 3421, 3865, 4733, 5221
BspTI CTTAAG 1 cut(s) 3446
BspTNI GGTCTC 1 cut(s) 1987
BsrDI GCAATG 2 cut(s) 751, 3440
BsrFI RCCGGY 1 cut(s) 1972
BsrGI TGTACA 2 cut(s) 808, 2389
BssAI RCCGGY 1 cut(s) 1972
BssECI CCNNGG 8 cut(s) 523, 2199, 3152, 4275, 4342, 4628, 4985, 5200
BssNI GRCGYC 1 cut(s) 2051
BssT1I CCWWGG 4 cut(s) 523, 2199, 3152, 4342
Bst6I CTCTTC 5 cut(s) 1311, 2330, 2495, 4290, 4369
BstACI GRCGYC 1 cut(s) 2051
BstAFI CTTAAG 1 cut(s) 3446
BstAPI GCANNNNNTGC 3 cut(s) 356, 974, 5045
BstAUI TGTACA 2 cut(s) 808, 2389
BstBI TTCGAA 1 cut(s) 1604
BstDSI CCRYGG 3 cut(s) 523, 3152, 5200
BstENI CCTNNNNNAGG 2 cut(s) 401, 3128
BstH2I RGCGCY 2 cut(s) 2628, 2949
BstHHI GCGC 3 cut(s) 2627, 2948, 4319
BstMAI GTCTC 8 cut(s) 47, 899, 1499, 1780, 1781, 1987, 2982, 4088
BstNSI RCATGY 1 cut(s) 1004
BstPAI GACNNNNGTC 1 cut(s) 3396
BstSFI CTRYAG 8 cut(s) 357, 1341, 2226, 2706, 3762, 3960, 4257, 4508
BstSLI GKGCMC 3 cut(s) 1886, 3493, 3870
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 4 cut(s) 550, 1934, 4114, 5114
BstXI CCANNNNNNTGG 2 cut(s) 2206, 3463
BstYI RGATCY 4 cut(s) 550, 1934, 4114, 5114
BsuI GTATCC 3 cut(s) 613, 718, 3205
BsuRI GGCC 8 cut(s) 89, 145, 171, 540, 2574, 3523, 3605, 5106
BtgI CCRYGG 3 cut(s) 523, 3152, 5200
BtrI CACGTC 1 cut(s) 3494
BtsI GCAGTG 1 cut(s) 1777
BveI ACCTGC 1 cut(s) 5069
CaiI CAGNNNCTG 9 cut(s) 280, 356, 2972, 3362, 4703, 4775, 4961, 5045, 5048
CciI TCATGA 1 cut(s) 2359
CfoI GCGC 3 cut(s) 2627, 2948, 4319
Cfr10I RCCGGY 1 cut(s) 1972
Cfr13I GGNCC 7 cut(s) 213, 539, 926, 3604, 3983, 4151, 4625
CsiI ACCWGGT 1 cut(s) 2236
CspCI CAANNNNNGTGG 2 cut(s) 4579, 4614
DraI TTTAAA 1 cut(s) 1579
DraIII CACNNNGTG 1 cut(s) 4721
EaeI YGGCCR 2 cut(s) 143, 5104
Eam1104I CTCTTC 5 cut(s) 1311, 2330, 2495, 4290, 4369
EarI CTCTTC 5 cut(s) 1311, 2330, 2495, 4290, 4369
EciI GGCGGA 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 2609
Eco130I CCWWGG 4 cut(s) 523, 2199, 3152, 4342
Eco147I AGGCCT 1 cut(s) 3523
Eco24I GRGCYC 2 cut(s) 1131, 2611
Eco31I GGTCTC 1 cut(s) 1987
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 5 cut(s) 213, 926, 3983, 4151, 4625
Eco47III AGCGCT 1 cut(s) 2626
Eco53kI GAGCTC 1 cut(s) 2609
Eco57I CTGAAG 6 cut(s) 2519, 4848, 4878, 4908, 4938, 4977
Eco88I CYCGRG 1 cut(s) 1370
EcoICRI GAGCTC 1 cut(s) 2609
EcoNI CCTNNNNNAGG 2 cut(s) 401, 3128
EcoO109I RGGNCCY 1 cut(s) 4151
EcoRI GAATTC 2 cut(s) 2482, 3949
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 4 cut(s) 523, 2199, 3152, 4342
EcoT38I GRGCYC 2 cut(s) 1131, 2611
ErhI CCWWGG 4 cut(s) 523, 2199, 3152, 4342
FalI AAGNNNNNCTT 8 cut(s) 250, 282, 913, 945, 1443, 1475, 1626, 1658
FaqI GGGAC 4 cut(s) 120, 1736, 2471, 3675
FauI CCCGC 1 cut(s) 5048
FbaI TGATCA 1 cut(s) 2539
FblI GTMKAC 3 cut(s) 1137, 2677, 4693
FriOI GRGCYC 2 cut(s) 1131, 2611
GlaI GCGC 3 cut(s) 2626, 2947, 4318
GsaI CCCAGC 5 cut(s) 1379, 3010, 3245, 4965, 5037
GsuI CTGGAG 8 cut(s) 971, 2312, 2485, 3149, 3798, 4968, 4998, 5145
HaeII RGCGCY 2 cut(s) 2628, 2949
HaeIII GGCC 8 cut(s) 89, 145, 171, 540, 2574, 3523, 3605, 5106
HapII CCGG 5 cut(s) 142, 195, 1973, 4782, 5151
HhaI GCGC 3 cut(s) 2627, 2948, 4319
Hin1I GRCGYC 1 cut(s) 2051
Hin6I GCGC 3 cut(s) 2625, 2946, 4317
HinP1I GCGC 3 cut(s) 2625, 2946, 4317
HincII GTYRAC 3 cut(s) 1586, 1821, 1957
HindII GTYRAC 3 cut(s) 1586, 1821, 1957
HindIII AAGCTT 2 cut(s) 1397, 2436
HpaI GTTAAC 1 cut(s) 1957
HpaII CCGG 5 cut(s) 142, 195, 1973, 4782, 5151
HphI GGTGA 6 cut(s) 704, 1118, 1191, 2606, 2757, 4707
Hpy99I CGWCG 2 cut(s) 185, 389
HpyCH4IV ACGT 3 cut(s) 2051, 2330, 3493
HpySE526I ACGT 3 cut(s) 2051, 2330, 3493
Hsp92I GRCGYC 1 cut(s) 2051
HspAI GCGC 3 cut(s) 2625, 2946, 4317
KpnI GGTACC 3 cut(s) 1340, 3425, 5225
Ksp22I TGATCA 1 cut(s) 2539
KspAI GTTAAC 1 cut(s) 1957
LguI GCTCTTC 2 cut(s) 2330, 4369
LmnI GCTCC 8 cut(s) 1043, 1417, 2606, 3003, 4306, 4987, 5017, 5066
MabI ACCWGGT 1 cut(s) 2236
MaeII ACGT 3 cut(s) 2051, 2330, 3493
MaeIII GTNAC 7 cut(s) 1037, 1273, 1538, 2763, 3781, 4165, 4432
MflI RGATCY 4 cut(s) 550, 1934, 4114, 5114
MhlI GDGCHC 6 cut(s) 1131, 1886, 2342, 2611, 3493, 3870
MlsI TGGCCA 1 cut(s) 5106
MluNI TGGCCA 1 cut(s) 5106
MlyI GAGTC 4 cut(s) 292, 1826, 2771, 2984
MmeI TCCRAC 5 cut(s) 1925, 2187, 2392, 4603, 5193
Mox20I TGGCCA 1 cut(s) 5106
MroXI GAANNNNTTC 1 cut(s) 2355
MscI TGGCCA 1 cut(s) 5106
MslI CAYNNNNRTG 2 cut(s) 1889, 2568
Msp20I TGGCCA 1 cut(s) 5106
MspA1I CMGCKG 4 cut(s) 2003, 4322, 4796, 5045
MspCI CTTAAG 1 cut(s) 3446
MspI CCGG 5 cut(s) 142, 195, 1973, 4782, 5151
Mva1269I GAATGC 7 cut(s) 784, 994, 1209, 2148, 2647, 3204, 4276
NciI CCSGG 2 cut(s) 142, 196
NcoI CCATGG 2 cut(s) 523, 3152
NheI GCTAGC 1 cut(s) 4742
NmeAIII GCCGAG 1 cut(s) 265
NmuCI GTSAC 4 cut(s) 2763, 3781, 4165, 4432
NspI RCATGY 1 cut(s) 1004
NspV TTCGAA 1 cut(s) 1604
OliI CACNNNNGTG 1 cut(s) 1889
PacI TTAATTAA 1 cut(s) 2550
PagI TCATGA 1 cut(s) 2359
PaqCI CACCTGC 1 cut(s) 5069
PceI AGGCCT 1 cut(s) 3523
PciSI GCTCTTC 2 cut(s) 2330, 4369
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 7 cut(s) 784, 994, 1209, 2148, 2647, 3204, 4276
PdmI GAANNNNTTC 1 cut(s) 2355
PflMI CCANNNNNTGG 2 cut(s) 4703, 5021
PfoI TCCNGGA 3 cut(s) 396, 683, 4117
PleI GAGTC 4 cut(s) 291, 1825, 2770, 2984
PpsI GAGTC 4 cut(s) 291, 1825, 2770, 2984
PpuMI RGGWCCY 1 cut(s) 4151
PshAI GACNNNNGTC 1 cut(s) 3396
PshBI ATTAAT 2 cut(s) 599, 2546
Psp124BI GAGCTC 1 cut(s) 2611
Psp5II RGGWCCY 1 cut(s) 4151
PspFI CCCAGC 5 cut(s) 1375, 3006, 3241, 4961, 5033
PspPI GGNCC 7 cut(s) 213, 539, 926, 3604, 3983, 4151, 4625
PspPPI RGGWCCY 1 cut(s) 4151
PsrI GAACNNNNNNTAC 2 cut(s) 1933, 1965
PstI CTGCAG 3 cut(s) 361, 2710, 3766
PstNI CAGNNNCTG 9 cut(s) 280, 356, 2972, 3362, 4703, 4775, 4961, 5045, 5048
PsuI RGATCY 4 cut(s) 550, 1934, 4114, 5114
PvuII CAGCTG 4 cut(s) 2003, 4322, 4796, 5045
RseI CAYNNNNRTG 2 cut(s) 1889, 2568
SacI GAGCTC 1 cut(s) 2611
SapI GCTCTTC 2 cut(s) 2330, 4369
Sau96I GGNCC 7 cut(s) 213, 539, 926, 3604, 3983, 4151, 4625
SchI GAGTC 4 cut(s) 292, 1826, 2771, 2984
SduI GDGCHC 6 cut(s) 1131, 1886, 2342, 2611, 3493, 3870
SexAI ACCWGGT 1 cut(s) 2236
SfcI CTRYAG 8 cut(s) 357, 1341, 2226, 2706, 3762, 3960, 4257, 4508
SfuI TTCGAA 1 cut(s) 1604
SinI GGWCC 5 cut(s) 213, 926, 3983, 4151, 4625
SmiMI CAYNNNNRTG 2 cut(s) 1889, 2568
SmlI CTYRAG 6 cut(s) 1517, 1726, 1743, 2492, 2576, 3446
SmoI CTYRAG 6 cut(s) 1517, 1726, 1743, 2492, 2576, 3446
SpeI ACTAGT 1 cut(s) 3395
SseBI AGGCCT 1 cut(s) 3523
SspI AATATT 3 cut(s) 2017, 3654, 4026
SstI GAGCTC 1 cut(s) 2611
StuI AGGCCT 1 cut(s) 3523
StyI CCWWGG 4 cut(s) 523, 2199, 3152, 4342
TaiI ACGT 3 cut(s) 2054, 2333, 3496
TaqI TCGA 7 cut(s) 120, 1511, 1604, 2072, 2620, 2861, 3996
TatI WGTACW 5 cut(s) 808, 1648, 1756, 2389, 5093
TauI GCSGC 3 cut(s) 239, 2009, 4826
TseFI GTSAC 4 cut(s) 2763, 3781, 4165, 4432
Tsp45I GTSAC 4 cut(s) 2763, 3781, 4165, 4432
TspGWI ACGGA 7 cut(s) 373, 1056, 1248, 1421, 2204, 2419, 4386
Van91I CCANNNNNTGG 2 cut(s) 4703, 5021
Vha464I CTTAAG 1 cut(s) 3446
VneI GTGCAC 1 cut(s) 3489
VpaK11BI GGWCC 5 cut(s) 213, 926, 3983, 4151, 4625
VspI ATTAAT 2 cut(s) 599, 2546
XagI CCTNNNNNAGG 2 cut(s) 401, 3128
XapI RAATTY 9 cut(s) 1361, 2065, 2174, 2482, 2588, 3892, 3949, 4231, 4537
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 1 cut(s) 1004
XcmI CCANNNNNNNNNTGG 3 cut(s) 223, 530, 5114
XmiI GTMKAC 3 cut(s) 1137, 2677, 4693
XmnI GAANNNNTTC 1 cut(s) 2355
ZraI GACGTC 1 cut(s) 2052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.