AT1G55805

Belongs to the BolA IbaG family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016082
Physical Location & Seq
Reverse (-)
20858610 .. 20859483
874 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55805.1

Sequence Viewer

Length: 483 bp
ATGTTTTCATCTTCGATTAGGTTAATCGTATCTGGGTTCCACCGGACTCAACCCCTAAAATCGCCGGTAAATTCTCCGAGCGTCTTCATCTCCGTACCTAAATTCTTCAACTCTGAGTCAAAATCGACGGGAACTGGTTCAAGATCCGTAGCAATGAGCAGCGTTGAGAAAACCGGGTCGGATTCTGGAGCAATAGAGAATCGAGCGAGCAGGATGAGAGAGAAGCTTCAAAAAGAGCTCGAACCAGTGGAGTTAGTGATCGAAGATGTTTCGTATCAGCACGCTGGTCACGCCGGAATGAAAGGTAGAACCGACGATGAGACGCATTTCAATGTGAAGATCGTTTCTAAAGGATTCGAGGGAATGAATTTGGTGAAGAGACACAGGTTGGTCTATCATTTGCTCCGGGAAGAGTTGGATACTGGATTGCACGCTCTTTCTATCGTCTCCAAGACGCCGTCTGAGTCTCCTTCTAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BolA

Protein Analysis

160

Amino Acids

17.67

Weight (kDa)

9.22

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BolA PF01722 76 - 155 2.8e-29 BolA-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55805
fragaria_vesca FvH4_5g18310
malus_domestica MD06G1238900.v1.1
prunus_persica Prupe.5G242800_v2.0.a1
pyrus_communis pycom06g21450
rosa_chinensis RchiOBHm_Chr7g0177271
rosa_laevigata RLG00000005550
rosa_multiflora Rmu_sc0005310.1_g000011
rosa_roxburghii Rroxscaffold_3G00276000
rosa_rugosa Rorug06G0404300
rosa_samantha Rh7AG004300 Rh7BG004100 Rh7CG004000 Rh7DG004000
rosa_wichuraiana Rw7G000350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 3 cut(s) 70, 101, 367
AcyI GRCGYC 1 cut(s) 455
AfaI GTAC 1 cut(s) 96
AgsI TTSAA 4 cut(s) 109, 141, 230, 331
AluBI AGCT 2 cut(s) 226, 238
AluI AGCT 2 cut(s) 226, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 4 cut(s) 314, 373, 451, 471
AlwI GGATC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 3 cut(s) 70, 101, 367
Asp700I GAANNNNTTC 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 175, 407
AsuHPI GGTGA 1 cut(s) 385
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 442
BciVI GTATCC 1 cut(s) 412
BcnI CCSGG 2 cut(s) 175, 407
BcoDI GTCTC 4 cut(s) 314, 373, 451, 471
BfaI CTAG 1 cut(s) 481
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 175, 407
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 2 cut(s) 175, 407
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 207
BpuMI CCSGG 2 cut(s) 175, 407
BsaHI GRCGYC 1 cut(s) 455
BsaWI WCCGGW 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 3 cut(s) 139, 245, 427
Bse3DI GCAATG 1 cut(s) 159
BseGI GGATG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 105, 453
BseNI ACTGG 3 cut(s) 139, 245, 427
BseXI GCAGC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 5 cut(s) 43, 65, 174, 294, 406
BsmAI GTCTC 4 cut(s) 314, 373, 451, 471
BsmBI CGTCTC 2 cut(s) 314, 451
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 3 cut(s) 143, 258, 339
BspCNI CTCAG 2 cut(s) 106, 454
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 3 cut(s) 139, 245, 427
BssAI RCCGGY 1 cut(s) 64
BssMI GATC 3 cut(s) 143, 258, 339
BssNI GRCGYC 1 cut(s) 455
Bst6I CTCTTC 2 cut(s) 371, 405
BstACI GRCGYC 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 208, 282, 432
BstDEI CTNAG 2 cut(s) 114, 462
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 3 cut(s) 146, 261, 342
BstMAI GTCTC 4 cut(s) 314, 373, 451, 471
BstMBI GATC 3 cut(s) 143, 258, 339
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 173, 405
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuI GTATCC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 3 cut(s) 208, 282, 432
Cfr10I RCCGGY 1 cut(s) 64
CseI GACGC 3 cut(s) 70, 331, 463
Csp6I GTAC 1 cut(s) 95
CviJI RGCY 2 cut(s) 226, 238
CviKI_1 RGCY 2 cut(s) 226, 238
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 2 cut(s) 114, 462
DpnI GATC 3 cut(s) 145, 260, 341
DpnII GATC 3 cut(s) 143, 258, 339
Eam1104I CTCTTC 2 cut(s) 371, 405
EarI CTCTTC 2 cut(s) 371, 405
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 2 cut(s) 314, 451
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 481
GluI GCNGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 207
HapII CCGG 5 cut(s) 43, 65, 174, 294, 406
HgaI GACGC 3 cut(s) 70, 331, 463
Hin1I GRCGYC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 6 cut(s) 46, 116, 182, 199, 354, 464
HpaII CCGG 5 cut(s) 43, 65, 174, 294, 406
HphI GGTGA 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 78, 115, 181, 463
Hpy188III TCNNGA 2 cut(s) 141, 186
Hpy99I CGWCG 2 cut(s) 130, 317
HpyAV CCTTC 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 114, 462
Hsp92I GRCGYC 1 cut(s) 455
Kzo9I GATC 3 cut(s) 143, 258, 339
LmnI GCTCC 2 cut(s) 188, 408
Lsp1109I GCAGC 1 cut(s) 171
MaeI CTAG 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 145, 260, 341
MboI GATC 3 cut(s) 143, 258, 339
MboII GAAGA 7 cut(s) 3, 76, 97, 275, 349, 388, 422
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 70, 101, 367
MlyI GAGTC 3 cut(s) 40, 125, 473
MmeI TCCRAC 2 cut(s) 159, 396
MnlI CCTC 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 5 cut(s) 43, 65, 174, 294, 406
MspR9I CCNGG 2 cut(s) 175, 407
MwoI GCNNNNNNNGC 1 cut(s) 290
NciI CCSGG 2 cut(s) 175, 407
NdeII GATC 3 cut(s) 143, 258, 339
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 182, 199, 354
PflFI GACNNNGTC 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 3 cut(s) 40, 124, 472
PpsI GAGTC 3 cut(s) 40, 124, 472
Psp124BI GAGCTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 457
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 330
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 3 cut(s) 143, 258, 339
SchI GAGTC 3 cut(s) 40, 125, 473
ScrFI CCNGG 2 cut(s) 175, 407
SduI GDGCHC 1 cut(s) 240
SetI ASST 6 cut(s) 23, 100, 228, 240, 307, 389
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 3 cut(s) 70, 101, 367
SspMI CTAG 1 cut(s) 481
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 173, 405
TaqI TCGA 6 cut(s) 14, 125, 202, 240, 261, 357
TasI AATT 3 cut(s) 70, 101, 367
TfiI GAWTC 3 cut(s) 182, 199, 354
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 76, 314, 380
TspGWI ACGGA 2 cut(s) 82, 136
TspRI CASTG 1 cut(s) 252
Tth111I GACNNNGTC 1 cut(s) 457
XapI RAATTY 3 cut(s) 70, 101, 367
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.