Rmu_sc0005310.1_g000011

Belongs to the BolA IbaG family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005310.1
OG0016082
Physical Location & Seq
Reverse (-)
65084 .. 65404
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005310.1_g000011.1.cds

Sequence Viewer

Length: 321 bp
atgggttctagaggaggagcgacggttttgcagcagctaagtcgggcaagccgaatgagaacgaaactgcagacggcgttggaagccagcgctctggacatagaagacgtgtcacatcagcacgcgggacacgccgccatgagggataacaacgccggtgagactcatttcaacctgaagatcgtgtcccccaaattcgaggggcagagcctcgttaaacgacaccgcatggtgtatgatgccttggccgacgagctccagtccggtcttcatgcgctctccattgtcgccaagactccccaagaaaccggccccaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BolA

Protein Analysis

106

Amino Acids

11.52

Weight (kDa)

9.22

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55805
fragaria_vesca FvH4_5g18310
malus_domestica MD06G1238900.v1.1
prunus_persica Prupe.5G242800_v2.0.a1
pyrus_communis pycom06g21450
rosa_chinensis RchiOBHm_Chr7g0177271
rosa_laevigata RLG00000005550
rosa_multiflora Rmu_sc0005310.1_g000011
rosa_roxburghii Rroxscaffold_3G00276000
rosa_rugosa Rorug06G0404300
rosa_samantha Rh7AG004300 Rh7BG004100 Rh7CG004000 Rh7DG004000
rosa_wichuraiana Rw7G000350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 3 cut(s) 125, 135, 226
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 197
AfeI AGCGCT 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 141
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 109
AluBI AGCT 2 cut(s) 37, 256
AluI AGCT 2 cut(s) 37, 256
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 155
Aor51HI AGCGCT 1 cut(s) 91
AoxI GGCC 2 cut(s) 246, 310
ApeKI GCWGC 2 cut(s) 31, 34
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 2 cut(s) 92, 277
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 2 cut(s) 111, 260
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 43, 46
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 4 cut(s) 10, 23, 44, 57
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 3 cut(s) 32, 35, 135
BlsI GCNGC 3 cut(s) 33, 36, 136
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 313
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 2 cut(s) 111, 260
BpmI CTGGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 2 cut(s) 155, 308
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 2 cut(s) 43, 46
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 248, 312
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 156, 264, 309
BslFI GGGAC 2 cut(s) 141, 172
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 141, 172
BsnI GGCC 2 cut(s) 248, 312
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 3 cut(s) 125, 135, 226
BspANI GGCC 2 cut(s) 248, 312
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 72
BsrFI RCCGGY 2 cut(s) 155, 308
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 2 cut(s) 155, 308
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 49, 88, 123
BstDEI CTNAG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 277
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 83, 131
BstSFI CTRYAG 1 cut(s) 68
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 43, 46
BstV2I GAAGAC 2 cut(s) 111, 260
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 2 cut(s) 248, 312
BtrI CACGTC 1 cut(s) 109
Cac8I GCNNGC 3 cut(s) 49, 88, 123
CfoI GCGC 2 cut(s) 92, 277
Cfr10I RCCGGY 2 cut(s) 155, 308
Cfr13I GGNCC 1 cut(s) 311
CviAII CATG 3 cut(s) 139, 229, 272
CviJI RGCY 7 cut(s) 37, 51, 86, 210, 248, 256, 312
CviKI_1 RGCY 7 cut(s) 37, 51, 86, 210, 248, 256, 312
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 258
Eco47III AGCGCT 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 142, 232, 275
FaiI YATR 5 cut(s) 101, 140, 230, 237, 273
FaqI GGGAC 2 cut(s) 141, 172
FatI CATG 3 cut(s) 138, 228, 271
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 32, 35, 135
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 32, 35, 135
FspBI CTAG 1 cut(s) 9
GlaI GCGC 2 cut(s) 91, 276
GluI GCNGC 3 cut(s) 32, 35, 135
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 248, 312
HapII CCGG 3 cut(s) 156, 264, 309
HhaI GCGC 2 cut(s) 92, 277
Hin1II CATG 3 cut(s) 142, 232, 275
Hin6I GCGC 2 cut(s) 90, 275
HinP1I GCGC 2 cut(s) 90, 275
HinfI GANTC 2 cut(s) 163, 295
HpaII CCGG 3 cut(s) 156, 264, 309
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 9, 95
Hpy99I CGWCG 2 cut(s) 25, 254
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 31, 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 131
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 3 cut(s) 142, 232, 275
HspAI GCGC 2 cut(s) 90, 275
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 17, 261
LpnPI CCDG 6 cut(s) 80, 100, 169, 188, 272, 277
Lsp1109I GCAGC 2 cut(s) 43, 46
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 111
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 3 cut(s) 116, 190, 260
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 1 cut(s) 194
MlyI GAGTC 2 cut(s) 157, 289
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 5, 8, 135, 193, 221
MseI TTAA 1 cut(s) 216
MspI CCGG 3 cut(s) 156, 264, 309
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 83, 131
NdeII GATC 1 cut(s) 180
NlaIII CATG 3 cut(s) 142, 232, 275
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PkrI GCNGC 3 cut(s) 33, 36, 136
PleI GAGTC 2 cut(s) 157, 289
PpsI GAGTC 2 cut(s) 157, 289
Psp124BI GAGCTC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 72
SacI GAGCTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 32, 35, 135
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 2 cut(s) 157, 289
SduI GDGCHC 1 cut(s) 258
SetI ASST 4 cut(s) 39, 111, 177, 258
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 68
SgrAI CRCCGGYG 1 cut(s) 155
Sse9I AATT 1 cut(s) 194
SsiI CCGC 3 cut(s) 125, 135, 226
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 258
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 194
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 2 cut(s) 31, 34
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 260
XapI RAATTY 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 8
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.