MD06G1238900.v1.1

Belongs to the BolA IbaG family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016082
Physical Location & Seq
Reverse (-)
36965237 .. 36965596
360 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1238900.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGTGCTGGAGTGTGGAGAAAGAGAGATGGGTTCGAGAGGAGCAGCGATGGTGGTGTCGCAGCTGACACGAGCAAGCAGAATGAGGACGAAATTGCAGAGGGCGTTGGAAGCGAGCGTTTTGGAGATTGAAGACGTGTCGCATCAGCACGCCGGCCACGCCGCCATGAGAGAGAAGGCCAATGGCAATGGCGAAACTCACTTCAACCTCAAGGTCGTGTCCCCAAAGTTCGAGGGGCAGAGCCTGGTGAAACGACACCGCATGGTCTACGATGCCTTGGCCGACGAGCTCCAGTCCGGGCTCCACGCGCTGTCCATCGTGGCCAAGACTCCCCAAGAGATTGTCCTCAACCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BolA

Protein Analysis

120

Amino Acids

13.13

Weight (kDa)

8.89

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BolA PF01722 32 - 113 5.5e-32 BolA-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55805
fragaria_vesca FvH4_5g18310
malus_domestica MD06G1238900.v1.1
prunus_persica Prupe.5G242800_v2.0.a1
pyrus_communis pycom06g21450
rosa_chinensis RchiOBHm_Chr7g0177271
rosa_laevigata RLG00000005550
rosa_multiflora Rmu_sc0005310.1_g000011
rosa_roxburghii Rroxscaffold_3G00276000
rosa_rugosa Rorug06G0404300
rosa_samantha Rh7AG004300 Rh7BG004100 Rh7CG004000 Rh7DG004000
rosa_wichuraiana Rw7G000350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 308
AciI CCGC 2 cut(s) 162, 259
AcoI YGGCCR 3 cut(s) 154, 279, 321
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 2 cut(s) 131, 205
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 2 cut(s) 64, 289
AluI AGCT 2 cut(s) 64, 289
Alw21I GWGCWC 1 cut(s) 291
AlwNI CAGNNNCTG 1 cut(s) 244
AoxI GGCC 4 cut(s) 154, 177, 279, 321
ApeKI GCWGC 2 cut(s) 44, 61
AspLEI GCGC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 259
BalI TGGCCA 1 cut(s) 323
BanII GRGCYC 2 cut(s) 291, 303
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 56, 73
BccI CCATC 3 cut(s) 22, 43, 323
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 1 cut(s) 298
BisI GCNGC 3 cut(s) 45, 62, 162
BlsI GCNGC 3 cut(s) 46, 63, 163
Bme1390I CCNGG 2 cut(s) 245, 298
BmgBI CACGTC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 245, 298
BmsI GCATC 2 cut(s) 151, 262
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 2 cut(s) 29, 275
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 56, 73
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 4 cut(s) 156, 179, 281, 323
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 153, 297
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 4 cut(s) 156, 179, 281, 323
Bsp1286I GDGCHC 2 cut(s) 291, 303
BspACI CCGC 2 cut(s) 162, 259
BspANI GGCC 4 cut(s) 156, 179, 281, 323
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 276
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 245
BstC8I GCNNGC 4 cut(s) 76, 115, 150, 154
BstFNI CGCG 1 cut(s) 308
BstHHI GCGC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 110, 158, 307
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 243, 296
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 56, 73
BstV2I GAAGAC 1 cut(s) 138
BsuRI GGCC 4 cut(s) 156, 179, 281, 323
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 136
Cac8I GCNNGC 4 cut(s) 76, 115, 150, 154
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 152
CviAII CATG 2 cut(s) 166, 262
CviJI RGCY 8 cut(s) 64, 156, 179, 243, 281, 289, 301, 323
CviKI_1 RGCY 8 cut(s) 64, 156, 179, 243, 281, 289, 301, 323
EaeI YGGCCR 3 cut(s) 154, 279, 321
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 291, 303
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 291, 303
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 169, 265
FaiI YATR 2 cut(s) 167, 263
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 165, 261
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 45, 62, 162
FriOI GRGCYC 2 cut(s) 291, 303
Fsp4HI GCNGC 3 cut(s) 45, 62, 162
GlaI GCGC 1 cut(s) 309
GluI GCNGC 3 cut(s) 45, 62, 162
GsuI CTGGAG 2 cut(s) 29, 275
HaeIII GGCC 4 cut(s) 156, 179, 281, 323
HapII CCGG 2 cut(s) 153, 297
HhaI GCGC 1 cut(s) 310
Hin1II CATG 2 cut(s) 169, 265
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 1 cut(s) 328
HpaII CCGG 2 cut(s) 153, 297
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 158, 307
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 169, 265
HspAI GCGC 1 cut(s) 308
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
LmnI GCTCC 3 cut(s) 41, 294, 306
LpnPI CCDG 5 cut(s) 166, 230, 257, 305, 310
Lsp1109I GCAGC 2 cut(s) 56, 73
LweI GCATC 2 cut(s) 151, 262
MaeII ACGT 1 cut(s) 135
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 291, 303
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 6 cut(s) 32, 78, 93, 218, 226, 356
Mox20I TGGCCA 1 cut(s) 323
MroNI GCCGGC 1 cut(s) 152
MscI TGGCCA 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 2 cut(s) 153, 297
MspR9I CCNGG 2 cut(s) 245, 298
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 110, 158, 307
NaeI GCCGGC 1 cut(s) 154
NciI CCSGG 1 cut(s) 298
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 169, 265
NlaIV GGNNCC 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 154
PkrI GCNGC 3 cut(s) 46, 63, 163
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 302
PstNI CAGNNNCTG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 64
SacI GAGCTC 1 cut(s) 291
SatI GCNGC 3 cut(s) 45, 62, 162
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 245, 298
SduI GDGCHC 2 cut(s) 291, 303
SetI ASST 5 cut(s) 66, 138, 210, 216, 291
SfaNI GCATC 2 cut(s) 151, 262
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 162, 259
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 243, 296
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 35, 231
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 164
TseI GCWGC 2 cut(s) 44, 61
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.