Rh7CG004000

Belongs to the BolA IbaG family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016082
Physical Location & Seq
Forward (+)
355945 .. 356211
267 bp
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UTR
Exon/CDS
Intron
Rh7CG004000.1

Sequence Viewer

Length: 267 bp
ATGAGAACGAAACTGCAGACGGCGTTGGAAGCCAGCGCTCTGGACATAGAAGACGTGTCACATCAGCACGCCGGACACGCCGCCATGAGGGATAACAACGCCGGCGAGACTCATTTCAACCTGAAGATCGTGTCCCCCAAATTCGAGGGGCAGAGCCTCGTTAAACGACACCGCATGGTGTATGATGCCTTGGCCGACGAGCTCCAGTCCGGTCTTCATGCGCTCTCCATCGTCGCCAAGACTCCCCAAGAAACCGGCCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BolA

Protein Analysis

88

Amino Acids

9.66

Weight (kDa)

6.58

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BolA PF01722 5 - 84 1.2e-32 BolA-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55805
fragaria_vesca FvH4_5g18310
malus_domestica MD06G1238900.v1.1
prunus_persica Prupe.5G242800_v2.0.a1
pyrus_communis pycom06g21450
rosa_chinensis RchiOBHm_Chr7g0177271
rosa_laevigata RLG00000005550
rosa_multiflora Rmu_sc0005310.1_g000011
rosa_roxburghii Rroxscaffold_3G00276000
rosa_rugosa Rorug06G0404300
rosa_samantha Rh7AG004300 Rh7BG004100 Rh7CG004000 Rh7DG004000
rosa_wichuraiana Rw7G000350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 172
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 143
AfeI AGCGCT 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 1 cut(s) 118
AjiI CACGTC 1 cut(s) 55
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 37
AoxI GGCC 2 cut(s) 192, 256
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 2 cut(s) 38, 223
AspS9I GGNCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 2 cut(s) 57, 206
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 259
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 2 cut(s) 57, 206
BpmI CTGGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 2 cut(s) 101, 254
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 205
BshFI GGCC 2 cut(s) 194, 258
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 4 cut(s) 72, 102, 210, 255
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 2 cut(s) 194, 258
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 2 cut(s) 81, 172
BspANI GGCC 2 cut(s) 194, 258
BspLI GGNNCC 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 18
BsrFI RCCGGY 2 cut(s) 101, 254
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 2 cut(s) 101, 254
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 34, 69, 103
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 223
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 29, 77
BstSFI CTRYAG 1 cut(s) 14
BstV2I GAAGAC 2 cut(s) 57, 206
BstXI CCANNNNNNTGG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 194, 258
BtrI CACGTC 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 34, 69, 103
CfoI GCGC 2 cut(s) 38, 223
Cfr10I RCCGGY 2 cut(s) 101, 254
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 3 cut(s) 85, 175, 218
CviJI RGCY 5 cut(s) 32, 156, 194, 202, 258
CviKI_1 RGCY 5 cut(s) 32, 156, 194, 202, 258
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EaeI YGGCCR 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 204
Eco47III AGCGCT 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 3 cut(s) 88, 178, 221
FaiI YATR 5 cut(s) 47, 86, 176, 183, 219
FaqI GGGAC 1 cut(s) 118
FatI CATG 3 cut(s) 84, 174, 217
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 81
GlaI GCGC 2 cut(s) 37, 222
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 194, 258
HapII CCGG 4 cut(s) 72, 102, 210, 255
HhaI GCGC 2 cut(s) 38, 223
Hin1II CATG 3 cut(s) 88, 178, 221
Hin6I GCGC 2 cut(s) 36, 221
HinP1I GCGC 2 cut(s) 36, 221
HinfI GANTC 2 cut(s) 109, 241
HpaII CCGG 4 cut(s) 72, 102, 210, 255
Hpy188III TCNNGA 1 cut(s) 41
Hpy99I CGWCG 2 cut(s) 200, 236
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 77
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 3 cut(s) 88, 178, 221
HspAI GCGC 2 cut(s) 36, 221
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 26, 46, 85, 115, 134, 218, 223
LweI GCATC 1 cut(s) 175
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 57
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 3 cut(s) 62, 136, 206
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 140
MlyI GAGTC 2 cut(s) 103, 235
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 3 cut(s) 81, 139, 167
MreI CGCCGGCG 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 1 cut(s) 162
MspI CCGG 4 cut(s) 72, 102, 210, 255
MwoI GCNNNNNNNGC 2 cut(s) 29, 77
NaeI GCCGGC 1 cut(s) 103
NdeII GATC 1 cut(s) 126
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 3 cut(s) 88, 178, 221
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 103, 235
PpsI GAGTC 2 cut(s) 103, 235
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 2 cut(s) 103, 235
SduI GDGCHC 1 cut(s) 204
SetI ASST 3 cut(s) 57, 123, 204
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 14
SgrAI CRCCGGYG 1 cut(s) 101
Sse9I AATT 1 cut(s) 140
SsiI CCGC 2 cut(s) 81, 172
SstI GAGCTC 1 cut(s) 204
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 140
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseFI GTSAC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 206
XapI RAATTY 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.