Prupe.5G242800_v2.0.a1

Belongs to the BolA IbaG family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016082
Physical Location & Seq
Reverse (-)
18248412 .. 18249171
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G242800.1

Sequence Viewer

Length: 327 bp
ATGGGTTCAAGAGGAGGAGCGAAGGTTTTGCAGCTGTCTCGAGCGAGCAGAATGAGGACGAAATTGCAGACGGCGTTGGAAGCGAGCGTTTTGGAGATAGAAGACGTGTCGCATCAGCACGCAGGCCACGCCGCCATGAGGGCCAACGCTAACAACAAGGATGGCGAAACGCACTTCAACCTCAAGGTCGTGTCCCCAAAATTCGAGGGGCAGAGCCTGGTGAAACGACACCGCATGGTGTACGACGCCTTAGCCGACGAGCTCCAGTCTGGTCTCCATGCGCTGTCTATTGTGGCCAAGACTCCCCAAGAGATTGGCCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BolA

Protein Analysis

109

Amino Acids

11.77

Weight (kDa)

9.69

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55805
fragaria_vesca FvH4_5g18310
malus_domestica MD06G1238900.v1.1
prunus_persica Prupe.5G242800_v2.0.a1
pyrus_communis pycom06g21450
rosa_chinensis RchiOBHm_Chr7g0177271
rosa_laevigata RLG00000005550
rosa_multiflora Rmu_sc0005310.1_g000011
rosa_roxburghii Rroxscaffold_3G00276000
rosa_rugosa Rorug06G0404300
rosa_samantha Rh7AG004300 Rh7BG004100 Rh7CG004000 Rh7DG004000
rosa_wichuraiana Rw7G000350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 132, 232
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 138
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 2 cut(s) 9, 178
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 2 cut(s) 34, 262
AluI AGCT 2 cut(s) 34, 262
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 42, 278
AlwNI CAGNNNCTG 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 4 cut(s) 124, 141, 294, 316
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 141, 317
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 39
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 87
BcgI CGANNNNNNTGC 4 cut(s) 10, 20, 44, 54
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 42, 278
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 32, 132
BlsI GCNGC 2 cut(s) 33, 133
Bme1390I CCNGG 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 39
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 141, 317
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 4 cut(s) 126, 143, 296, 318
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 42, 278
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 4 cut(s) 126, 143, 296, 318
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 264
BspACI CCGC 2 cut(s) 132, 232
BspANI GGCC 4 cut(s) 126, 143, 296, 318
BspLI GGNNCC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 265
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 46, 85, 120, 124
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 42, 278
BstMWI GCNNNNNNNGC 3 cut(s) 80, 128, 140
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 4 cut(s) 126, 143, 296, 318
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 4 cut(s) 46, 85, 120, 124
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 141, 317
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 241
CviAII CATG 3 cut(s) 136, 235, 278
CviJI RGCY 8 cut(s) 34, 126, 143, 216, 254, 262, 296, 318
CviKI_1 RGCY 8 cut(s) 34, 126, 143, 216, 254, 262, 296, 318
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 3 cut(s) 139, 238, 281
FaiI YATR 3 cut(s) 137, 236, 279
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 135, 234, 277
Fnu4HI GCNGC 2 cut(s) 32, 132
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 32, 132
GlaI GCGC 1 cut(s) 282
GluI GCNGC 2 cut(s) 32, 132
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 4 cut(s) 126, 143, 296, 318
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 3 cut(s) 139, 238, 281
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 9, 39
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 2 cut(s) 248, 260
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 31, 67
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 128, 140
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 3 cut(s) 139, 238, 281
HspAI GCGC 1 cut(s) 281
LmnI GCTCC 2 cut(s) 17, 267
LpnPI CCDG 5 cut(s) 108, 203, 230, 255, 278
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 121
MaeII ACGT 1 cut(s) 105
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 2 cut(s) 62, 200
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 5, 8, 48, 132, 191, 199
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 3 cut(s) 80, 128, 140
NlaIII CATG 3 cut(s) 139, 238, 281
NlaIV GGNNCC 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PkrI GCNGC 2 cut(s) 33, 133
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 2 cut(s) 141, 317
PstNI CAGNNNCTG 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 264
SatI GCNGC 2 cut(s) 32, 132
Sau96I GGNCC 2 cut(s) 141, 317
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 264
SetI ASST 6 cut(s) 27, 36, 108, 183, 189, 264
SfaNI GCATC 1 cut(s) 121
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmlI CTYRAG 2 cut(s) 39, 182
SmoI CTYRAG 2 cut(s) 39, 182
Sse9I AATT 2 cut(s) 62, 200
SsiI CCGC 2 cut(s) 132, 232
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 40, 204
TasI AATT 2 cut(s) 62, 200
TauI GCSGC 1 cut(s) 134
TseI GCWGC 1 cut(s) 31
XapI RAATTY 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.