AT1G56560

neutral invertase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
21192137 .. 21195166
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56560.1

Sequence Viewer

Length: 1851 bp
ATGAGCGCAATCTATCTCCTCCGCAAAATTTCCACGAAAACTCCTTCACGATTTCACAGAAGCCTCTTCTTCTCCACTTTCTCCAAGGATTCACCACCAGATTTATCTCGAACCACCTCAATTCGCCATTTATCATCAAGCCAGAGATTCGTCTCTTCGTCCATTTACTGTTTCCCCCAATCAAAGATTTTACCAAATCGATTTTCCGAGAAGACGACGGGAATCTCCGTAAGACAATTCTCAACATCCGTTGAAACTAATCTCAGTGACAAGAGTTTCGAGAGAATTCATGTTCAAAGTGATGCAATTTTAGAAAGGATACACAAAAACGAAGAAGAAGTAGAAACAGTTTCTATTGGTAGTGAGAAAGTTGTGAGAGAAGAGAGTGAAGCTGAGAAAGAAGCGTGGAGGATTTTGGAAAACGCTGTTGTTAGGTATTGTGGTTCTCCGGTTGGGACAGTGGCGGCGAATGATCCTGGAGATAAGATGCCTTTGAATTATGATCAAGTTTTTATAAGAGATTTTGTGCCTTCTGCTTTGGCTTTTTTGCTTAAAGGTGAAGGTGATATTGTTAGGAACTTTCTCCTTCATACATTACAGCTTCAGAGTTGGGAGAAAACTGTAGACTGTTACAGTCCTGGACAGGGTTTGATGCCTGCAAGTTTTAAAGTAAGAACTGTGGCGCTTGATGAGAACACTACGGAAGAGGTTTTGGATCCGGATTTTGGTGAATCAGCTATTGGTCGTGTTGCTCCTGTGGATTCTGGTTTGTGGTGGATTATTCTCTTGAGGGCATATGGAAAGATAACTGGAGATTTCTCGTTACAAGAGAGGATAGATGTTCAGACAGGGATAAAGCTTATCATGAACTTGTGTTTAGCAGATGGATTTGATATGTTTCCAACACTTTTGGTCACTGATGGTTCTTGTATGATTGATCGTCGTATGGGTATCCATGGCCACCCTCTCGAAATCCAATCGTTATTCTACTCAGCACTAAGATGCTCCCGTGAGATGCTTTCTGTTAATGATAGCTCTAAGGATCTTGTAAGAGCCATTAACAATAGATTAAGTGCTTTGTCCTTTCATATCAGAGAATACTACTGGGTGGACATAAAAAAGATCAATGAGATATACCGTTACAAGACAGAAGAGTATTCCACGGATGCGACTAACAAGTTCAACATCTATCCTGAGCAAATTCCTCCATGGCTCATGGACTGGATACCCGAGCAAGGTGGGTATCTCCTTGGGAACCTACAACCTGCACACATGGATTTCAGATTCTTCACGCTTGGGAACTTTTGGTCTATTGTTTCGTCCTTGGCTACACCAAAGCAGAATGAAGCTATATTGAACTTAATTGAAGCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCATTAGAGTACGATGATTGGCGTATAATAACTGGAAGCGACCCAAAGAACACGCCTTGGTCGTATCACAACAGTGGATCCTGGCCAACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGATGGGAAGACCAGAGCTAGCTGAAAAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCAGATCGTTGGCCAGAGTACTACGACACCCGATCTGGCAAATTCATTGGAAAGCAGTCTCGCCTCTACCAGACATGGACAGTCGCTGGATTCTTGACTTCTAAACTCCTCCTAGCAAATCCAGAGATGGCATCACTGTTATTCTGGGAAGAAGATTACGAACTTCTCGATATTTGTGCATGTGGTCTTAGAAAATCTGACCGGAAGAAATGCTCCCGAGTCGCTGCCAAGACTCAGATTCTTGTTCGATGA

Protein Analysis

616

Amino Acids

70.44

Weight (kDa)

6.15

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_100 PF12899 135 - 574 2.3e-222 Alkaline and neutral invertase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011833)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 1273
AccI GTMKAC 1 cut(s) 624
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 2 cut(s) 22, 464
AclWI GGATC 6 cut(s) 467, 710, 723, 1050, 1491, 1504
AcoI YGGCCR 3 cut(s) 958, 1502, 1610
AcsI RAATTY 4 cut(s) 27, 285, 1200, 1640
AcuI CTGAAG 1 cut(s) 587
AfaI GTAC 2 cut(s) 1430, 1619
AfiI CCNNNNNNNGG 3 cut(s) 644, 725, 1235
AflII CTTAAG 1 cut(s) 1403
AgsI TTSAA 6 cut(s) 254, 296, 496, 1183, 1357, 1367
AjnI CCWGG 3 cut(s) 475, 637, 1499
AjuI GAANNNNNNNTTGG 6 cut(s) 187, 219, 723, 755, 1580, 1612
AleI CACNNNNGTG 1 cut(s) 1491
AluBI AGCT 9 cut(s) 392, 601, 737, 859, 1035, 1349, 1370, 1558, 1562
AluI AGCT 9 cut(s) 392, 601, 737, 859, 1035, 1349, 1370, 1558, 1562
Alw26I GTCTC 3 cut(s) 157, 1585, 1662
AlwI GGATC 6 cut(s) 467, 710, 723, 1050, 1491, 1504
AlwNI CAGNNNCTG 2 cut(s) 1583, 1685
Ama87I CYCGRG 2 cut(s) 1229, 1815
Aor13HI TCCGGA 1 cut(s) 718
AoxI GGCC 3 cut(s) 958, 1502, 1610
ApeKI GCWGC 1 cut(s) 1823
ApoI RAATTY 4 cut(s) 27, 285, 1200, 1640
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 2 cut(s) 8, 685
AsuHPI GGTGA 4 cut(s) 84, 569, 575, 740
AsuNHI GCTAGC 1 cut(s) 1558
AvaI CYCGRG 2 cut(s) 1229, 1815
BalI TGGCCA 3 cut(s) 960, 1504, 1612
BamHI GGATCC 2 cut(s) 715, 1496
BbsI GAAGAC 2 cut(s) 218, 1555
BbvI GCAGC 1 cut(s) 1810
BccI CCATC 4 cut(s) 878, 914, 1537, 1720
BcgI CGANNNNNNTGC 2 cut(s) 1757, 1791
BciT130I CCWGG 3 cut(s) 477, 639, 1501
BciVI GTATCC 3 cut(s) 312, 962, 1218
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 3 cut(s) 157, 1585, 1662
BfaI CTAG 2 cut(s) 1559, 1712
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 686
BfrI CTTAAG 1 cut(s) 1403
BfuAI ACCTGC 1 cut(s) 1273
BfuI GTATCC 3 cut(s) 312, 962, 1218
BglII AGATCT 1 cut(s) 1407
BisI GCNGC 2 cut(s) 465, 1824
BlsI GCNGC 2 cut(s) 466, 1825
BmcAI AGTACT 1 cut(s) 1619
Bme1390I CCNGG 3 cut(s) 477, 639, 1501
BmeT110I CYCGRG 2 cut(s) 1229, 1815
BmiI GGNNCC 3 cut(s) 717, 1256, 1498
BmrFI CCNGG 3 cut(s) 477, 639, 1501
BmrI ACTGGG 1 cut(s) 1114
BmsI GCATC 7 cut(s) 292, 477, 642, 992, 1005, 1156, 1739
BmtI GCTAGC 1 cut(s) 1562
BmuI ACTGGG 1 cut(s) 1114
BpiI GAAGAC 2 cut(s) 218, 1555
BpmI CTGGAG 2 cut(s) 498, 831
Bpu10I CCTNAGC 1 cut(s) 1194
BpuEI CTTGAG 1 cut(s) 808
Bsa29I ATCGAT 1 cut(s) 199
BsaJI CCNNGG 7 cut(s) 84, 955, 1161, 1208, 1249, 1323, 1475
BsaWI WCCGGW 3 cut(s) 448, 718, 1800
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 3 cut(s) 644, 725, 1235
Bse1I ACTGG 4 cut(s) 814, 1109, 1226, 1456
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 3 cut(s) 477, 639, 1501
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 7 cut(s) 84, 955, 1161, 1208, 1249, 1323, 1475
BseGI GGATG 2 cut(s) 245, 1171
BseLI CCNNNNNNNGG 3 cut(s) 644, 725, 1235
BseMII CTCAG 6 cut(s) 277, 384, 1005, 1185, 1575, 1847
BseNI ACTGG 4 cut(s) 814, 1109, 1226, 1456
BseRI GAGGAG 2 cut(s) 8, 1697
BseXI GCAGC 1 cut(s) 1810
BsgI GTGCAG 1 cut(s) 1251
BshFI GGCC 3 cut(s) 960, 1504, 1612
BshVI ATCGAT 1 cut(s) 199
BsiHKCI CYCGRG 2 cut(s) 1229, 1815
BsiSI CCGG 3 cut(s) 449, 719, 1801
BslFI GGGAC 2 cut(s) 469, 1391
BslI CCNNNNNNNGG 3 cut(s) 644, 725, 1235
BsmAI GTCTC 3 cut(s) 157, 1585, 1662
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 469, 1391
BsnI GGCC 3 cut(s) 960, 1504, 1612
BsoBI CYCGRG 2 cut(s) 1229, 1815
Bsp13I TCCGGA 1 cut(s) 718
Bsp19I CCATGG 2 cut(s) 955, 1208
BspACI CCGC 2 cut(s) 22, 464
BspANI GGCC 3 cut(s) 960, 1504, 1612
BspCNI CTCAG 6 cut(s) 276, 385, 1004, 1186, 1576, 1846
BspDI ATCGAT 1 cut(s) 199
BspEI TCCGGA 1 cut(s) 718
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 3 cut(s) 717, 1256, 1498
BspMI ACCTGC 1 cut(s) 1273
BspOI GCTAGC 1 cut(s) 1562
BspPI GGATC 6 cut(s) 467, 710, 723, 1050, 1491, 1504
BspTI CTTAAG 1 cut(s) 1403
BsrI ACTGG 4 cut(s) 814, 1109, 1226, 1456
BssECI CCNNGG 7 cut(s) 84, 955, 1161, 1208, 1249, 1323, 1475
BssT1I CCWWGG 6 cut(s) 84, 955, 1208, 1249, 1323, 1475
Bst2UI CCWGG 3 cut(s) 477, 639, 1501
Bst6I CTCTTC 6 cut(s) 71, 160, 375, 699, 1146, 1583
BstAFI CTTAAG 1 cut(s) 1403
BstC8I GCNNGC 2 cut(s) 657, 1560
BstDEI CTNAG 9 cut(s) 263, 393, 991, 998, 1038, 1194, 1584, 1787, 1833
BstDSI CCRYGG 3 cut(s) 955, 1161, 1208
BstF5I GGATG 2 cut(s) 245, 1171
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 2 cut(s) 8, 685
BstMAI GTCTC 3 cut(s) 157, 1585, 1662
BstMWI GCNNNNNNNGC 1 cut(s) 1568
BstNI CCWGG 3 cut(s) 477, 639, 1501
BstNSI RCATGY 2 cut(s) 1536, 1782
BstSCI CCNGG 3 cut(s) 475, 637, 1499
BstSFI CTRYAG 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 1810
BstV2I GAAGAC 2 cut(s) 218, 1555
BstX2I RGATCY 4 cut(s) 715, 1042, 1407, 1496
BstYI RGATCY 4 cut(s) 715, 1042, 1407, 1496
Bsu15I ATCGAT 1 cut(s) 199
BsuI GTATCC 3 cut(s) 312, 962, 1218
BsuRI GGCC 3 cut(s) 960, 1504, 1612
BsuTUI ATCGAT 1 cut(s) 199
BtgI CCRYGG 3 cut(s) 955, 1161, 1208
BtsCI GGATG 2 cut(s) 245, 1171
BtsI GCAGTG 1 cut(s) 1584
BtsIMutI CAGTG 6 cut(s) 271, 465, 915, 1498, 1584, 1733
BveI ACCTGC 1 cut(s) 1273
Cac8I GCNNGC 2 cut(s) 657, 1560
CaiI CAGNNNCTG 2 cut(s) 1583, 1685
CciI TCATGA 1 cut(s) 864
CfoI GCGC 2 cut(s) 8, 685
ClaI ATCGAT 1 cut(s) 199
Csp6I GTAC 2 cut(s) 1429, 1618
CviAII CATG 9 cut(s) 290, 865, 956, 1209, 1216, 1273, 1533, 1674, 1779
CviQI GTAC 2 cut(s) 1429, 1618
DdeI CTNAG 9 cut(s) 263, 393, 991, 998, 1038, 1194, 1584, 1787, 1833
DraI TTTAAA 1 cut(s) 667
EaeI YGGCCR 3 cut(s) 958, 1502, 1610
Eam1104I CTCTTC 6 cut(s) 71, 160, 375, 699, 1146, 1583
EarI CTCTTC 6 cut(s) 71, 160, 375, 699, 1146, 1583
Eco130I CCWWGG 6 cut(s) 84, 955, 1208, 1249, 1323, 1475
Eco57I CTGAAG 1 cut(s) 587
Eco88I CYCGRG 2 cut(s) 1229, 1815
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 475, 637, 1499
EcoT14I CCWWGG 6 cut(s) 84, 955, 1208, 1249, 1323, 1475
ErhI CCWWGG 6 cut(s) 84, 955, 1208, 1249, 1323, 1475
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 9 cut(s) 293, 868, 959, 1212, 1219, 1276, 1536, 1677, 1782
FaqI GGGAC 2 cut(s) 469, 1391
FatI CATG 9 cut(s) 289, 864, 955, 1208, 1215, 1272, 1532, 1673, 1778
FauNDI CATATG 1 cut(s) 796
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 2 cut(s) 465, 1824
FokI GGATG 2 cut(s) 232, 1178
Fsp4HI GCNGC 2 cut(s) 465, 1824
FspBI CTAG 2 cut(s) 1559, 1712
GlaI GCGC 2 cut(s) 7, 684
GluI GCNGC 2 cut(s) 465, 1824
GsuI CTGGAG 2 cut(s) 498, 831
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 3 cut(s) 960, 1504, 1612
HapII CCGG 3 cut(s) 449, 719, 1801
HhaI GCGC 2 cut(s) 8, 685
Hin1II CATG 9 cut(s) 293, 868, 959, 1212, 1219, 1276, 1536, 1677, 1782
Hin6I GCGC 2 cut(s) 6, 683
HinP1I GCGC 2 cut(s) 6, 683
HindIII AAGCTT 1 cut(s) 857
HpaII CCGG 3 cut(s) 449, 719, 1801
HphI GGTGA 4 cut(s) 84, 569, 575, 740
Hpy166II GTNNAC 3 cut(s) 625, 1111, 1524
Hpy188I TCNGA 7 cut(s) 208, 606, 846, 1094, 1283, 1798, 1836
Hpy8I GTNNAC 3 cut(s) 625, 1111, 1524
Hpy99I CGWCG 2 cut(s) 220, 945
HpyAV CCTTC 4 cut(s) 54, 540, 554, 596
HpyCH4V TGCA 6 cut(s) 305, 659, 1268, 1421, 1577, 1778
HpyF10VI GCNNNNNNNGC 1 cut(s) 1568
HpyF3I CTNAG 9 cut(s) 263, 393, 991, 998, 1038, 1194, 1584, 1787, 1833
Hsp92II CATG 9 cut(s) 293, 868, 959, 1212, 1219, 1276, 1536, 1677, 1782
HspAI GCGC 2 cut(s) 6, 683
Kpn2I TCCGGA 1 cut(s) 718
Ksp22I TGATCA 1 cut(s) 502
LmnI GCTCC 3 cut(s) 757, 1010, 1817
Lsp1109I GCAGC 1 cut(s) 1810
LweI GCATC 7 cut(s) 292, 477, 642, 992, 1005, 1156, 1739
MaeI CTAG 2 cut(s) 1559, 1712
MaeIII GTNAC 6 cut(s) 266, 629, 822, 913, 1139, 1412
MflI RGATCY 4 cut(s) 715, 1042, 1407, 1496
MlsI TGGCCA 3 cut(s) 960, 1504, 1612
MluCI AATT 9 cut(s) 27, 120, 236, 285, 306, 496, 1200, 1362, 1640
MluNI TGGCCA 3 cut(s) 960, 1504, 1612
MlyI GAGTC 2 cut(s) 1825, 1827
MmeI TCCRAC 1 cut(s) 926
Mox20I TGGCCA 3 cut(s) 960, 1504, 1612
MroI TCCGGA 1 cut(s) 718
MscI TGGCCA 3 cut(s) 960, 1504, 1612
MseI TTAA 7 cut(s) 552, 666, 1026, 1059, 1070, 1361, 1404
MslI CAYNNNNRTG 3 cut(s) 1000, 1491, 1531
Msp20I TGGCCA 3 cut(s) 960, 1504, 1612
MspCI CTTAAG 1 cut(s) 1403
MspI CCGG 3 cut(s) 449, 719, 1801
MspR9I CCNGG 3 cut(s) 477, 639, 1501
MvaI CCWGG 3 cut(s) 477, 639, 1501
MwoI GCNNNNNNNGC 1 cut(s) 1568
NcoI CCATGG 2 cut(s) 955, 1208
NdeI CATATG 1 cut(s) 796
NheI GCTAGC 1 cut(s) 1558
NlaIII CATG 9 cut(s) 293, 868, 959, 1212, 1219, 1276, 1536, 1677, 1782
NlaIV GGNNCC 3 cut(s) 717, 1256, 1498
NmuCI GTSAC 2 cut(s) 266, 913
NspI RCATGY 2 cut(s) 1536, 1782
OliI CACNNNNGTG 1 cut(s) 1491
PagI TCATGA 1 cut(s) 864
PcsI WCGNNNNNNNCGW 2 cut(s) 1478, 1764
PfeI GAWTC 8 cut(s) 89, 147, 222, 731, 761, 1284, 1689, 1837
PfoI TCCNGGA 2 cut(s) 475, 637
PkrI GCNGC 2 cut(s) 466, 1825
PleI GAGTC 2 cut(s) 1825, 1826
PpsI GAGTC 2 cut(s) 1825, 1826
PsiI TTATAA 1 cut(s) 515
Psp6I CCWGG 3 cut(s) 475, 637, 1499
PspGI CCWGG 3 cut(s) 475, 637, 1499
PspN4I GGNNCC 3 cut(s) 717, 1256, 1498
PstNI CAGNNNCTG 2 cut(s) 1583, 1685
PsuI RGATCY 4 cut(s) 715, 1042, 1407, 1496
RsaI GTAC 2 cut(s) 1430, 1619
RsaNI GTAC 2 cut(s) 1429, 1618
RseI CAYNNNNRTG 3 cut(s) 1000, 1491, 1531
SaqAI TTAA 7 cut(s) 552, 666, 1026, 1059, 1070, 1361, 1404
SatI GCNGC 2 cut(s) 465, 1824
ScaI AGTACT 1 cut(s) 1619
SchI GAGTC 2 cut(s) 1825, 1827
ScrFI CCNGG 3 cut(s) 477, 639, 1501
SfaNI GCATC 7 cut(s) 292, 477, 642, 992, 1005, 1156, 1739
SfcI CTRYAG 1 cut(s) 621
SmiMI CAYNNNNRTG 3 cut(s) 1000, 1491, 1531
SmlI CTYRAG 2 cut(s) 787, 1403
SmoI CTYRAG 2 cut(s) 787, 1403
Sse9I AATT 9 cut(s) 27, 120, 236, 285, 306, 496, 1200, 1362, 1640
SsiI CCGC 2 cut(s) 22, 464
SspMI CTAG 2 cut(s) 1559, 1712
StyD4I CCNGG 3 cut(s) 475, 637, 1499
StyI CCWWGG 6 cut(s) 84, 955, 1208, 1249, 1323, 1475
TaqI TCGA 6 cut(s) 109, 199, 279, 969, 1767, 1846
TasI AATT 9 cut(s) 27, 120, 236, 285, 306, 496, 1200, 1362, 1640
TatI WGTACW 1 cut(s) 1617
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 8 cut(s) 89, 147, 222, 731, 761, 1284, 1689, 1837
Tru1I TTAA 7 cut(s) 552, 666, 1026, 1059, 1070, 1361, 1404
Tru9I TTAA 7 cut(s) 552, 666, 1026, 1059, 1070, 1361, 1404
TscAI CASTG 6 cut(s) 271, 465, 922, 1498, 1584, 1740
TseFI GTSAC 2 cut(s) 266, 913
TseI GCWGC 1 cut(s) 1823
Tsp45I GTSAC 2 cut(s) 266, 913
TspDTI ATGAA 7 cut(s) 278, 578, 881, 1076, 1359, 1553, 1633
TspGWI ACGGA 4 cut(s) 217, 238, 716, 1178
TspRI CASTG 6 cut(s) 271, 465, 922, 1498, 1584, 1740
Vha464I CTTAAG 1 cut(s) 1403
XapI RAATTY 4 cut(s) 27, 285, 1200, 1640
XceI RCATGY 2 cut(s) 1536, 1782
XcmI CCANNNNNNNNNTGG 1 cut(s) 1512
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 2 cut(s) 1559, 1712
ZrmI AGTACT 1 cut(s) 1619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.