Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007404.1

Orthogroup ID

OG0011833

Physical Location & Seq

Genomic Coordinates Forward (+)

4056 .. 6239

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007404.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgcctgcaagttttaaagtcagaactgtgcctctcgatgagaacaagtttgaagaagttttggatccagattttggtgaatcagctattggccgagttgcacctgtggattctggtttgtggtggattattctattgagggcttatggaaagataactggtgactatggattacaggaaagggtggatgttcagacaggcttgaaaatgatcctgcacttgtgtttgactgatgggtttgatatgtttccttctcttttagtcacagatggctcctgtatgatagaccgtcggatgggtattcacggtcatcccctcgagatccaagccttattttactcggctctaaggtgctcccgtgagatgcttgccgtaaatgatggatccaagaatttggtaagggctatcaacaacagactcagtgctttgtcattccacatcagagaatattactgggtggatatgaaaaagattaatgagatatatcgatataagacagaggagtactctacagaagccaccaacaagtttaatatatatcctgaacaaattcctttatggttaatggactggattccagaggaaggtggattctttattggcaatctacaaccagctcacatggactttaggtttttcacacttggaaatctttggtccattgtttcatctttgggtactccaaaacaaaatcaagctatattgaatttggttgaagccaagtgggatgatcttgtggggcatatgccacttaagatatgctatcctgccttggaatatgaagagtggcgtataatcactggcagcgacccaaagaataccccttggtcgtatcataatggtggatcttggcccacacttctgtggcagttcacattggcatgcatcaagatgggcagaacagaactagctgaaaaggcagttgctttagctgagaagagcctgcgagctgaccgctggcctgagtattacgataccaaaactgggaaatttattggaaagcaatctcgactttaccaaacgtggaccattgccgggtaccttacaactaagatgctggtggagaatccagagaaggcggccttattattctgggaggaagattacgagcttcttgagatatgtgtttgcgcacttagcaagagtggccggaaaaagtgctccagaggtgcagctaggtctcagattcttatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009636 GO:0009987 GO:0010035 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0090599 GO:0099402 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

398

Amino Acids

45.73

Weight (kDa)

6.05

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56560 AT3G05820 AT3G05820
fragaria_vesca	FvH4_6g07880 FvH4_6g07880 FvH4_6g07880
malus_domestica	MD04G1191300.v1.1
prunus_persica	Prupe.6G309800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457581
rosa_laevigata	RLG00000025208
rosa_multiflora	Rmu_sc0005321.1_g000004 Rmu_sc0007404.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421710
rosa_rugosa	Rorug03G0021600
rosa_samantha	Rh3AG082200 Rh3BG084500 Rh3CG084700 Rh3DG085900
rosa_wichuraiana	Rw3G007060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1132
Acc65I	GGTACC	1 cut(s)	1038
AccB1I	GGYRCC	1 cut(s)	1038
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	2 cut(s)	955, 1079
AclWI	GGATC	7 cut(s)	59, 72, 205, 316, 378, 391, 853
AcoI	YGGCCR	2 cut(s)	91, 1147
AcsI	RAATTY	4 cut(s)	391, 549, 706, 989
AfaI	GTAC	3 cut(s)	506, 679, 1040
AfiI	CCNNNNNNNGG	5 cut(s)	74, 295, 584, 984, 1035
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	4 cut(s)	53, 205, 706, 716
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AleI	CACNNNNGTG	1 cut(s)	862
AluBI	AGCT	8 cut(s)	86, 617, 698, 911, 932, 950, 1111, 1175
AluI	AGCT	8 cut(s)	86, 617, 698, 911, 932, 950, 1111, 1175
Alw21I	GWGCWC	2 cut(s)	356, 1163
Alw26I	GTCTC	1 cut(s)	1185
AlwI	GGATC	7 cut(s)	59, 72, 205, 316, 378, 391, 853
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	5 cut(s)	91, 851, 959, 1080, 1147
ApeKI	GCWGC	2 cut(s)	804, 1172
ApoI	RAATTY	4 cut(s)	391, 549, 706, 989
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	1038
AspLEI	GCGC	1 cut(s)	1133
AspS9I	GGNCC	3 cut(s)	657, 852, 1026
AsuC2I	CCSGG	1 cut(s)	1036
AsuHPI	GGTGA	2 cut(s)	89, 173
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	657, 1026
BamHI	GGATCC	2 cut(s)	64, 383
BanI	GGYRCC	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	356, 1163
BbvI	GCAGC	2 cut(s)	816, 1184
BccI	CCATC	5 cut(s)	227, 263, 289, 374, 886
BceAI	ACGGC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	1036
BcoDI	GTCTC	1 cut(s)	1185
BfaI	CTAG	2 cut(s)	908, 1176
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	752
BisI	GCNGC	3 cut(s)	805, 1080, 1173
BlsI	GCNGC	3 cut(s)	806, 1081, 1174
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	1036
Bme18I	GGWCC	2 cut(s)	657, 1026
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	657, 852, 1026
BmiI	GGNNCC	4 cut(s)	66, 274, 385, 1040
BmrFI	CCNGG	1 cut(s)	1036
BmrI	ACTGGG	2 cut(s)	463, 993
BmsI	GCATC	3 cut(s)	354, 894, 1044
BmuI	ACTGGG	2 cut(s)	463, 993
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	1 cut(s)	1147
BpuEI	CTTGAG	1 cut(s)	1136
BpuMI	CCSGG	1 cut(s)	1036
Bsa29I	ATCGAT	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	1185
BsaJI	CCNNGG	2 cut(s)	771, 824
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 295, 584, 984, 1035
Bse1I	ACTGG	5 cut(s)	163, 458, 575, 805, 988
Bse3DI	GCAATG	1 cut(s)	1029
BseCI	ATCGAT	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	771, 824
BseGI	GGATG	4 cut(s)	193, 300, 310, 733
BseLI	CCNNNNNNNGG	5 cut(s)	74, 295, 584, 984, 1035
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	4 cut(s)	433, 924, 954, 1196
BseNI	ACTGG	5 cut(s)	163, 458, 575, 805, 988
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	2 cut(s)	816, 1184
BsgI	GTGCAG	2 cut(s)	200, 1191
BshFI	GGCC	5 cut(s)	93, 853, 961, 1082, 1149
BshNI	GGYRCC	1 cut(s)	1038
BshVI	ATCGAT	1 cut(s)	487
BsiHKAI	GWGCWC	2 cut(s)	356, 1163
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	1035, 1150
BslI	CCNNNNNNNGG	5 cut(s)	74, 295, 584, 984, 1035
BsmAI	GTCTC	1 cut(s)	1185
BsnI	GGCC	5 cut(s)	93, 853, 961, 1082, 1149
Bso31I	GGTCTC	1 cut(s)	1185
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	356, 1163
Bsp143I	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
BspACI	CCGC	2 cut(s)	955, 1079
BspANI	GGCC	5 cut(s)	93, 853, 961, 1082, 1149
BspCNI	CTCAG	4 cut(s)	432, 925, 955, 1195
BspDI	ATCGAT	1 cut(s)	487
BspLI	GGNNCC	4 cut(s)	66, 274, 385, 1040
BspPI	GGATC	7 cut(s)	59, 72, 205, 316, 378, 391, 853
BspQI	GCTCTTC	1 cut(s)	932
BspT107I	GGYRCC	1 cut(s)	1038
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	1185
BsrDI	GCAATG	1 cut(s)	1029
BsrI	ACTGG	5 cut(s)	163, 458, 575, 805, 988
BssECI	CCNNGG	2 cut(s)	771, 824
BssMI	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
BssT1I	CCWWGG	2 cut(s)	771, 824
Bst4CI	ACNGT	3 cut(s)	28, 290, 308
Bst6I	CTCTTC	2 cut(s)	777, 932
BstAFI	CTTAAG	1 cut(s)	752
BstC8I	GCNNGC	6 cut(s)	6, 369, 883, 944, 948, 959
BstDEI	CTNAG	7 cut(s)	347, 419, 933, 963, 1050, 1136, 1182
BstF5I	GGATG	4 cut(s)	193, 300, 310, 733
BstHHI	GCGC	1 cut(s)	1133
BstKTI	GATC	6 cut(s)	67, 213, 324, 386, 733, 848
BstMAI	GTCTC	1 cut(s)	1185
BstMBI	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
BstMWI	GCNNNNNNNGC	3 cut(s)	917, 1137, 1146
BstNSI	RCATGY	1 cut(s)	885
BstSCI	CCNGG	1 cut(s)	1034
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	816, 1184
BstX2I	RGATCY	4 cut(s)	64, 321, 383, 845
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	4 cut(s)	64, 321, 383, 845
Bsu15I	ATCGAT	1 cut(s)	487
BsuRI	GGCC	5 cut(s)	93, 853, 961, 1082, 1149
BsuTUI	ATCGAT	1 cut(s)	487
BtsCI	GGATG	4 cut(s)	193, 300, 310, 733
BtsIMutI	CAGTG	2 cut(s)	427, 798
Cac8I	GCNNGC	6 cut(s)	6, 369, 883, 944, 948, 959
CfoI	GCGC	1 cut(s)	1133
Cfr13I	GGNCC	3 cut(s)	657, 852, 1026
ClaI	ATCGAT	1 cut(s)	487
Csp6I	GTAC	3 cut(s)	505, 678, 1039
CviAII	CATG	2 cut(s)	622, 882
CviQI	GTAC	3 cut(s)	505, 678, 1039
DdeI	CTNAG	7 cut(s)	347, 419, 933, 963, 1050, 1136, 1182
DpnI	GATC	6 cut(s)	66, 212, 323, 385, 732, 847
DpnII	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
DraI	TTTAAA	1 cut(s)	16
EaeI	YGGCCR	2 cut(s)	91, 1147
Eam1104I	CTCTTC	2 cut(s)	777, 932
EarI	CTCTTC	2 cut(s)	777, 932
Eco130I	CCWWGG	2 cut(s)	771, 824
Eco31I	GGTCTC	1 cut(s)	1185
Eco47I	GGWCC	2 cut(s)	657, 1026
Eco88I	CYCGRG	1 cut(s)	317
EcoT14I	CCWWGG	2 cut(s)	771, 824
EcoT22I	ATGCAT	1 cut(s)	887
ErhI	CCWWGG	2 cut(s)	771, 824
FaeI	CATG	2 cut(s)	625, 885
FalI	AAGNNNNNCTT	2 cut(s)	1067, 1099
FatI	CATG	2 cut(s)	621, 881
FauNDI	CATATG	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	805, 1080, 1173
FokI	GGATG	4 cut(s)	200, 297, 307, 740
Fsp4HI	GCNGC	3 cut(s)	805, 1080, 1173
FspBI	CTAG	2 cut(s)	908, 1176
FspI	TGCGCA	1 cut(s)	1132
GlaI	GCGC	1 cut(s)	1132
GluI	GCNGC	3 cut(s)	805, 1080, 1173
GsuI	CTGGAG	1 cut(s)	1147
HaeIII	GGCC	5 cut(s)	93, 853, 961, 1082, 1149
HapII	CCGG	2 cut(s)	1035, 1150
HhaI	GCGC	1 cut(s)	1133
Hin1II	CATG	2 cut(s)	625, 885
Hin6I	GCGC	1 cut(s)	1131
HinP1I	GCGC	1 cut(s)	1131
HinfI	GANTC	7 cut(s)	80, 110, 417, 574, 591, 1066, 1186
HpaII	CCGG	2 cut(s)	1035, 1150
HphI	GGTGA	2 cut(s)	89, 173
Hpy166II	GTNNAC	2 cut(s)	873, 1026
Hpy188I	TCNGA	5 cut(s)	23, 195, 294, 443, 1185
Hpy8I	GTNNAC	2 cut(s)	873, 1026
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	261, 578, 1069
HpyCH4III	ACNGT	3 cut(s)	28, 290, 308
HpyCH4IV	ACGT	1 cut(s)	1022
HpyCH4V	TGCA	5 cut(s)	8, 101, 217, 885, 1172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	917, 1137, 1146
HpyF3I	CTNAG	7 cut(s)	347, 419, 933, 963, 1050, 1136, 1182
HpySE526I	ACGT	1 cut(s)	1022
Hsp92II	CATG	2 cut(s)	625, 885
HspAI	GCGC	1 cut(s)	1131
KpnI	GGTACC	1 cut(s)	1042
Kzo9I	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
LguI	GCTCTTC	1 cut(s)	932
LmnI	GCTCC	3 cut(s)	278, 359, 1166
Lsp1109I	GCAGC	2 cut(s)	816, 1184
LweI	GCATC	3 cut(s)	354, 894, 1044
MaeI	CTAG	2 cut(s)	908, 1176
MaeII	ACGT	1 cut(s)	1022
MaeIII	GTNAC	2 cut(s)	161, 262
MalI	GATC	6 cut(s)	66, 212, 323, 385, 732, 847
MboI	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
MboII	GAAGA	4 cut(s)	65, 794, 949, 1112
MflI	RGATCY	4 cut(s)	64, 321, 383, 845
MhlI	GDGCHC	2 cut(s)	356, 1163
MluCI	AATT	4 cut(s)	391, 549, 706, 989
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	7 cut(s)	42, 132, 326, 493, 574, 1090, 1160
Mph1103I	ATGCAT	1 cut(s)	887
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	5 cut(s)	15, 474, 531, 563, 753
MslI	CAYNNNNRTG	4 cut(s)	840, 862, 880, 890
MspA1I	CMGCKG	1 cut(s)	957
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	2 cut(s)	1035, 1150
MspR9I	CCNGG	1 cut(s)	1036
MwoI	GCNNNNNNNGC	3 cut(s)	917, 1137, 1146
NciI	CCSGG	1 cut(s)	1036
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
NlaIII	CATG	2 cut(s)	625, 885
NlaIV	GGNNCC	4 cut(s)	66, 274, 385, 1040
NmeAIII	GCCGAG	2 cut(s)	119, 320
NmuCI	GTSAC	2 cut(s)	161, 262
NsbI	TGCGCA	1 cut(s)	1132
NsiI	ATGCAT	1 cut(s)	887
NspI	RCATGY	1 cut(s)	885
OliI	CACNNNNGTG	1 cut(s)	862
PaeI	GCATGC	1 cut(s)	885
PaeR7I	CTCGAG	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	6 cut(s)	80, 110, 574, 591, 1066, 1186
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	806, 1081, 1174
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	474
PspN4I	GGNNCC	4 cut(s)	66, 274, 385, 1040
PspPI	GGNCC	3 cut(s)	657, 852, 1026
PsuI	RGATCY	4 cut(s)	64, 321, 383, 845
RsaI	GTAC	3 cut(s)	506, 679, 1040
RsaNI	GTAC	3 cut(s)	505, 678, 1039
RseI	CAYNNNNRTG	4 cut(s)	840, 862, 880, 890
SapI	GCTCTTC	1 cut(s)	932
SaqAI	TTAA	5 cut(s)	15, 474, 531, 563, 753
SatI	GCNGC	3 cut(s)	805, 1080, 1173
Sau3AI	GATC	6 cut(s)	64, 210, 321, 383, 730, 845
Sau96I	GGNCC	3 cut(s)	657, 852, 1026
ScaI	AGTACT	1 cut(s)	506
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	1036
SduI	GDGCHC	2 cut(s)	356, 1163
SfaNI	GCATC	3 cut(s)	354, 894, 1044
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	1 cut(s)	317
SinI	GGWCC	2 cut(s)	657, 1026
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	4 cut(s)	840, 862, 880, 890
SmlI	CTYRAG	3 cut(s)	317, 752, 1115
SmoI	CTYRAG	3 cut(s)	317, 752, 1115
SphI	GCATGC	1 cut(s)	885
Sse9I	AATT	4 cut(s)	391, 549, 706, 989
SsiI	CCGC	2 cut(s)	955, 1079
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	2 cut(s)	908, 1176
StyD4I	CCNGG	1 cut(s)	1034
StyI	CCWWGG	2 cut(s)	771, 824
TaaI	ACNGT	3 cut(s)	28, 290, 308
TaiI	ACGT	1 cut(s)	1025
TaqI	TCGA	4 cut(s)	36, 318, 487, 1009
TasI	AATT	4 cut(s)	391, 549, 706, 989
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	1082
TfiI	GAWTC	6 cut(s)	80, 110, 574, 591, 1066, 1186
Tru1I	TTAA	5 cut(s)	15, 474, 531, 563, 753
Tru9I	TTAA	5 cut(s)	15, 474, 531, 563, 753
TscAI	CASTG	2 cut(s)	427, 805
TseFI	GTSAC	2 cut(s)	161, 262
TseI	GCWGC	2 cut(s)	804, 1172
Tsp45I	GTSAC	2 cut(s)	161, 262
TspDTI	ATGAA	3 cut(s)	479, 657, 795
TspRI	CASTG	2 cut(s)	427, 805
Van91I	CCANNNNNTGG	1 cut(s)	74
Vha464I	CTTAAG	1 cut(s)	752
VpaK11BI	GGWCC	2 cut(s)	657, 1026
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	4 cut(s)	391, 549, 706, 989
XceI	RCATGY	1 cut(s)	885
XhoI	CTCGAG	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	2 cut(s)	908, 1176
ZrmI	AGTACT	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.