Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011833

Physical Location & Seq

Genomic Coordinates Reverse (-)

6690246 .. 6693732

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG085900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGATTTCCCTTAGTTTTCTTTGTCATTCTACAATGAAACCCACTTGTAGAATCCTGAGTAGTATTCGAAACTCTGCGTTTTTCGGGTTCGCGCCTGTTAAAATCCACAATGGGTCAGCAAAGAATGGAAATTTATCAAAGTTGTGCATCAATTTTGAGCAGAAAAGCCAATACCACACATACCCTTGTCGTGTGTTAGGATTTGGGAGTGTTTTGAGTGATACCCAGAAAGCCTTTTCGGTACCCAATTGGAGTTTTGGCCAATCTGGGGTTGTTTCTAGGTCATTTAGAAGTAGGGGTGTTTCTGTTATTGATAGTATTGGACCCAAGGGTCGTGATTTTTCGACATCGGTGGAGACCCGGGTGAATGAGAACAACTTTGAGAGGGTTTATGTTCAGGGTGGTATTAATGTGAAGCCTTTGGTGGTGGAAAGGATTGATAAGGATGAGAATGTTGTGGGGGAGGAACAGTCTAGGATAGAGGTTGCTGATGAAAATGTGAAGAATGTGGAGGCTTTGGATGAAGCTAAGGTTCTGAGTTCTGAGAGGGAGCTTTCAGATATTGAGAAGGAAGCTTGGAAGCTGTTGAGGGATTCGCTTGTGATGTATTGTGGGAGTCCTATTGGGACTATGGCTGCAAATGATCCGAATGATAAGCAGCCATTGAATTATGATCAGGTGTTTATACGTGATTTTGTTCCGTCAGCACTTGCTTTCTTGCTCAACGGAGAAGGAGAGATTGTGAGGAACTTCCTGCTTCATACATTGCAATTGCAGAGTTGGGAAAAAACTGTTGATTGCTATAGCCCAGGGCAGGGATTGATGCCTGCAAGTTTTAAAGTCAGAACTGTGCCTCTCGATGAGAACAAGTTTGAAGAAGTTTTGGATCCAGATTTTGGTGAATCAGCTATTGGCCGAGTTGCACCTGTGGATTCTGGTTTGTGGTGGATTATTCTATTGAGGGCTTATGGAAAGATAACTGGTGACTATGGATTACAGGAAAGGGTGGATGTTCAGACAGGCTTGAAAATGATCCTGCACTTGTGTTTAACTGATGGGTTTGATATGTTTCCTTCTCTTTTAGTCACGGATGGCTCCTGTATGATAGACCGTCGGATGGGTATTCACGGTCATCCCCTCGAGATCCAAGCCTTATTTTACTCGGCTCTAAGGTGCTCCCGTGAGATGCTTGCCGTAAATGATGGATCCAAGAATTTGGTAAGGGCTATCAACAACAGACTCAGTGCTTTGTCATTCCACATCAGAGAATATTACTGGGTGGATATGAAAAAGATTAATGAGATATATCGATATAAGACAGAGGAGTACTCTACAGAAGCCACCAACAAGTTTAATATATATCCTGAACAAATTCCTTTATGGTTAATGGACTGGATTCCAGAGGAAGGTGGATTCTTTATTGGCAATCTACAACCAGCTCACATGGACTTTAGGTTTTTCACACTTGGAAATCTTTGGTCCATTGTTTCATCTTTGGGTACTCCAAAACAAAATCAAGCTATATTGAATTTGGTTGAAGCCAAGTGGGATGATCTTGTGGGGCATATGCCACTTAAGATATGCTATCCTGCCTTGGAATATGAAGAGTGGCGTATAATCACTGGCAGCGACCCAAAGAATACCCCTTGGTCGTATCATAATGGTGGATCTTGGCCCACACTTCTGTGGCAGTTCACATTGGCATGCATCAAGATGGGCAGAACAGAACTAGCTGAAAAGGCAGTTGCTTTAGCTGAGAAGAGCCTGCGAGCTGACCGCTGGCCTGAATATTACGATACCAAAACTGGGAAATTTATTGGAAAGCAATCTCGACTTTACCAAACGTGGACCATTGCCGGGTACCTTACAACTAAGATGCTGGTGGAGAATCCAGAGAAGGCGGCCTTATTATTCTGGGAGGAAGATTACGAGCTTCTTGAGATATGTGTTTGCGCACTTAGCAAGAGTGGCCGGAAAAAGTGCTCCAGAGGTGCAGCTAGGTCTCAGATTCTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009636 GO:0009987 GO:0010035 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0090599 GO:0099402 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

672

Amino Acids

76.25

Weight (kDa)

6.0

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_100	PF12899	192 - 631	2.8e-223	Alkaline and neutral invertase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56560 AT3G05820 AT3G05820
fragaria_vesca	FvH4_6g07880 FvH4_6g07880 FvH4_6g07880
malus_domestica	MD04G1191300.v1.1
prunus_persica	Prupe.6G309800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457581
rosa_laevigata	RLG00000025208
rosa_multiflora	Rmu_sc0005321.1_g000004 Rmu_sc0007404.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421710
rosa_rugosa	Rorug03G0021600
rosa_samantha	Rh3AG082200 Rh3BG084500 Rh3CG084700 Rh3DG085900
rosa_wichuraiana	Rw3G007060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	330
Acc16I	TGCGCA	1 cut(s)	1954
Acc65I	GGTACC	2 cut(s)	241, 1860
AccB1I	GGYRCC	2 cut(s)	241, 1860
AccB7I	CCANNNNNTGG	1 cut(s)	896
AccII	CGCG	1 cut(s)	92
AciI	CCGC	2 cut(s)	1777, 1901
AclWI	GGATC	8 cut(s)	638, 881, 894, 1027, 1138, 1200, 1213, 1675
AcoI	YGGCCR	3 cut(s)	259, 913, 1969
AcsI	RAATTY	5 cut(s)	130, 1213, 1371, 1528, 1811
AfaI	GTAC	4 cut(s)	243, 1328, 1501, 1862
AfiI	CCNNNNNNNGG	8 cut(s)	268, 814, 815, 896, 1117, 1406, 1806, 1857
AflII	CTTAAG	1 cut(s)	1574
AgsI	TTSAA	5 cut(s)	667, 875, 1027, 1528, 1538
AjnI	CCWGG	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AleI	CACNNNNGTG	1 cut(s)	1684
Alw21I	GWGCWC	2 cut(s)	1178, 1985
Alw26I	GTCTC	2 cut(s)	350, 2007
AlwI	GGATC	8 cut(s)	638, 881, 894, 1027, 1138, 1200, 1213, 1675
Ama87I	CYCGRG	2 cut(s)	360, 1139
AoxI	GGCC	6 cut(s)	259, 913, 1673, 1781, 1902, 1969
ApeKI	GCWGC	4 cut(s)	635, 658, 1626, 1994
ApoI	RAATTY	5 cut(s)	130, 1213, 1371, 1528, 1811
AseI	ATTAAT	2 cut(s)	408, 1296
Asp700I	GAANNNNTTC	1 cut(s)	1371
Asp718I	GGTACC	2 cut(s)	241, 1860
AspLEI	GCGC	2 cut(s)	94, 1955
AspS9I	GGNCC	4 cut(s)	323, 1479, 1674, 1848
AsuC2I	CCSGG	3 cut(s)	361, 362, 1858
AsuHPI	GGTGA	3 cut(s)	376, 911, 995
AsuII	TTCGAA	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	360, 1139
AvaII	GGWCC	3 cut(s)	323, 1479, 1848
BalI	TGGCCA	1 cut(s)	261
BamHI	GGATCC	2 cut(s)	886, 1205
BanI	GGYRCC	2 cut(s)	241, 1860
Bbv12I	GWGCWC	2 cut(s)	1178, 1985
BbvI	GCAGC	4 cut(s)	622, 670, 1638, 2006
BccI	CCATC	5 cut(s)	1049, 1085, 1111, 1196, 1708
BceAI	ACGGC	1 cut(s)	1178
BciT130I	CCWGG	1 cut(s)	810
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	3 cut(s)	361, 362, 1858
BcoDI	GTCTC	2 cut(s)	350, 2007
BfaI	CTAG	4 cut(s)	279, 474, 1730, 1998
BfmI	CTRYAG	2 cut(s)	802, 1332
BfrI	CTTAAG	1 cut(s)	1574
BisI	GCNGC	5 cut(s)	636, 659, 1627, 1902, 1995
BlsI	GCNGC	5 cut(s)	637, 660, 1628, 1903, 1996
BmcAI	AGTACT	1 cut(s)	1328
Bme1390I	CCNGG	4 cut(s)	361, 362, 810, 1858
Bme18I	GGWCC	3 cut(s)	323, 1479, 1848
BmeT110I	CYCGRG	2 cut(s)	360, 1139
BmgT120I	GGNCC	4 cut(s)	323, 1479, 1674, 1848
BmiI	GGNNCC	6 cut(s)	243, 325, 888, 1096, 1207, 1862
BmrFI	CCNGG	4 cut(s)	361, 362, 810, 1858
BmrI	ACTGGG	2 cut(s)	1285, 1815
BmsI	GCATC	5 cut(s)	156, 813, 1176, 1716, 1866
BmuI	ACTGGG	2 cut(s)	1285, 1815
BplI	GAGNNNNNCTC	2 cut(s)	1313, 1345
BpmI	CTGGAG	1 cut(s)	1969
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	1958
BpuMI	CCSGG	3 cut(s)	361, 362, 1858
Bsa29I	ATCGAT	1 cut(s)	1309
BsaAI	YACGTR	1 cut(s)	689
BsaI	GGTCTC	2 cut(s)	350, 2007
BsaJI	CCNNGG	6 cut(s)	327, 360, 808, 809, 1593, 1646
BsaXI	ACNNNNNCTCC	4 cut(s)	455, 485, 726, 756
Bsc4I	CCNNNNNNNGG	8 cut(s)	268, 814, 815, 896, 1117, 1406, 1806, 1857
Bse1I	ACTGG	5 cut(s)	985, 1280, 1397, 1627, 1810
Bse3DI	GCAATG	2 cut(s)	764, 1851
BseBI	CCWGG	1 cut(s)	810
BseCI	ATCGAT	1 cut(s)	1309
BseDI	CCNNGG	6 cut(s)	327, 360, 808, 809, 1593, 1646
BseGI	GGATG	7 cut(s)	451, 526, 1015, 1096, 1122, 1132, 1555
BseLI	CCNNNNNNNGG	8 cut(s)	268, 814, 815, 896, 1117, 1406, 1806, 1857
BseMI	GCAATG	2 cut(s)	764, 1851
BseMII	CTCAG	6 cut(s)	47, 527, 534, 1255, 1746, 2018
BseNI	ACTGG	5 cut(s)	985, 1280, 1397, 1627, 1810
BseRI	GAGGAG	1 cut(s)	1337
BseXI	GCAGC	4 cut(s)	622, 670, 1638, 2006
BsgI	GTGCAG	2 cut(s)	1022, 2013
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	6 cut(s)	261, 915, 1675, 1783, 1904, 1971
BshNI	GGYRCC	2 cut(s)	241, 1860
BshVI	ATCGAT	1 cut(s)	1309
BsiHKAI	GWGCWC	2 cut(s)	1178, 1985
BsiHKCI	CYCGRG	2 cut(s)	360, 1139
BsiSI	CCGG	3 cut(s)	361, 1857, 1972
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	8 cut(s)	268, 814, 815, 896, 1117, 1406, 1806, 1857
BsmAI	GTCTC	2 cut(s)	350, 2007
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	6 cut(s)	261, 915, 1675, 1783, 1904, 1971
Bso31I	GGTCTC	2 cut(s)	350, 2007
BsoBI	CYCGRG	2 cut(s)	360, 1139
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	1178, 1985
Bsp143I	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
BspACI	CCGC	2 cut(s)	1777, 1901
BspANI	GGCC	6 cut(s)	261, 915, 1675, 1783, 1904, 1971
BspCNI	CTCAG	6 cut(s)	48, 528, 535, 1254, 1747, 2017
BspDI	ATCGAT	1 cut(s)	1309
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	6 cut(s)	243, 325, 888, 1096, 1207, 1862
BspPI	GGATC	8 cut(s)	638, 881, 894, 1027, 1138, 1200, 1213, 1675
BspQI	GCTCTTC	1 cut(s)	1754
BspT104I	TTCGAA	1 cut(s)	67
BspT107I	GGYRCC	2 cut(s)	241, 1860
BspTI	CTTAAG	1 cut(s)	1574
BspTNI	GGTCTC	2 cut(s)	350, 2007
BsrDI	GCAATG	2 cut(s)	764, 1851
BsrI	ACTGG	5 cut(s)	985, 1280, 1397, 1627, 1810
BssECI	CCNNGG	6 cut(s)	327, 360, 808, 809, 1593, 1646
BssMI	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
BssT1I	CCWWGG	3 cut(s)	327, 1593, 1646
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	5 cut(s)	471, 793, 850, 1112, 1130
Bst6I	CTCTTC	2 cut(s)	1599, 1754
BstAFI	CTTAAG	1 cut(s)	1574
BstBAI	YACGTR	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	6 cut(s)	828, 1191, 1705, 1766, 1770, 1781
BstF5I	GGATG	7 cut(s)	451, 526, 1015, 1096, 1122, 1132, 1555
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	94, 1955
BstKTI	GATC	8 cut(s)	646, 676, 889, 1035, 1146, 1208, 1555, 1670
BstMAI	GTCTC	2 cut(s)	350, 2007
BstMBI	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
BstMWI	GCNNNNNNNGC	3 cut(s)	1739, 1959, 1968
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	1707
BstSCI	CCNGG	4 cut(s)	359, 360, 808, 1856
BstSFI	CTRYAG	2 cut(s)	802, 1332
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	4 cut(s)	622, 670, 1638, 2006
BstX2I	RGATCY	4 cut(s)	886, 1143, 1205, 1667
BstXI	CCANNNNNNTGG	1 cut(s)	1216
BstYI	RGATCY	4 cut(s)	886, 1143, 1205, 1667
Bsu15I	ATCGAT	1 cut(s)	1309
BsuRI	GGCC	6 cut(s)	261, 915, 1675, 1783, 1904, 1971
BsuTUI	ATCGAT	1 cut(s)	1309
BtsCI	GGATG	7 cut(s)	451, 526, 1015, 1096, 1122, 1132, 1555
BtsIMutI	CAGTG	2 cut(s)	1249, 1620
Cac8I	GCNNGC	6 cut(s)	828, 1191, 1705, 1766, 1770, 1781
CfoI	GCGC	2 cut(s)	94, 1955
Cfr13I	GGNCC	4 cut(s)	323, 1479, 1674, 1848
Cfr9I	CCCGGG	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	1309
Csp6I	GTAC	4 cut(s)	242, 1327, 1500, 1861
CviAII	CATG	2 cut(s)	1444, 1704
CviQI	GTAC	4 cut(s)	242, 1327, 1500, 1861
DpnI	GATC	8 cut(s)	645, 675, 888, 1034, 1145, 1207, 1554, 1669
DpnII	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
DraI	TTTAAA	1 cut(s)	838
DrdI	GACNNNNNNGTC	1 cut(s)	330
DseDI	GACNNNNNNGTC	1 cut(s)	330
EaeI	YGGCCR	3 cut(s)	259, 913, 1969
Eam1104I	CTCTTC	2 cut(s)	1599, 1754
EarI	CTCTTC	2 cut(s)	1599, 1754
Eco130I	CCWWGG	3 cut(s)	327, 1593, 1646
Eco31I	GGTCTC	2 cut(s)	350, 2007
Eco47I	GGWCC	3 cut(s)	323, 1479, 1848
Eco88I	CYCGRG	2 cut(s)	360, 1139
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	3 cut(s)	327, 1593, 1646
EcoT22I	ATGCAT	1 cut(s)	1709
ErhI	CCWWGG	3 cut(s)	327, 1593, 1646
FaeI	CATG	2 cut(s)	1447, 1707
FalI	AAGNNNNNCTT	2 cut(s)	1889, 1921
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	2 cut(s)	1443, 1703
FauNDI	CATATG	1 cut(s)	1566
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	5 cut(s)	636, 659, 1627, 1902, 1995
FokI	GGATG	7 cut(s)	458, 533, 1022, 1103, 1119, 1129, 1562
Fsp4HI	GCNGC	5 cut(s)	636, 659, 1627, 1902, 1995
FspBI	CTAG	4 cut(s)	279, 474, 1730, 1998
FspI	TGCGCA	1 cut(s)	1954
GlaI	GCGC	2 cut(s)	93, 1954
GluI	GCNGC	5 cut(s)	636, 659, 1627, 1902, 1995
GsuI	CTGGAG	1 cut(s)	1969
HaeIII	GGCC	6 cut(s)	261, 915, 1675, 1783, 1904, 1971
HapII	CCGG	3 cut(s)	361, 1857, 1972
HhaI	GCGC	2 cut(s)	94, 1955
Hin1II	CATG	2 cut(s)	1447, 1707
Hin6I	GCGC	2 cut(s)	92, 1953
HinP1I	GCGC	2 cut(s)	92, 1953
HindIII	AAGCTT	1 cut(s)	573
HpaII	CCGG	3 cut(s)	361, 1857, 1972
HphI	GGTGA	3 cut(s)	376, 911, 995
Hpy166II	GTNNAC	2 cut(s)	1695, 1848
Hpy188I	TCNGA	9 cut(s)	537, 544, 559, 648, 845, 1017, 1116, 1265, 2007
Hpy8I	GTNNAC	2 cut(s)	1695, 1848
Hpy99I	CGWCG	1 cut(s)	1116
HpyAV	CCTTC	5 cut(s)	562, 725, 1083, 1400, 1891
HpyCH4III	ACNGT	5 cut(s)	471, 793, 850, 1112, 1130
HpyCH4IV	ACGT	2 cut(s)	688, 1844
HpyCH4V	TGCA	9 cut(s)	147, 638, 769, 775, 830, 923, 1039, 1707, 1994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1739, 1959, 1968
HpySE526I	ACGT	2 cut(s)	688, 1844
Hsp92II	CATG	2 cut(s)	1447, 1707
HspAI	GCGC	2 cut(s)	92, 1953
KpnI	GGTACC	2 cut(s)	245, 1864
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
LguI	GCTCTTC	1 cut(s)	1754
LmnI	GCTCC	4 cut(s)	550, 1100, 1181, 1988
Lsp1109I	GCAGC	4 cut(s)	622, 670, 1638, 2006
LweI	GCATC	5 cut(s)	156, 813, 1176, 1716, 1866
MaeI	CTAG	4 cut(s)	279, 474, 1730, 1998
MaeII	ACGT	2 cut(s)	688, 1844
MaeIII	GTNAC	2 cut(s)	983, 1084
MalI	GATC	8 cut(s)	645, 675, 888, 1034, 1145, 1207, 1554, 1669
MboI	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
MboII	GAAGA	5 cut(s)	514, 887, 1616, 1771, 1934
MfeI	CAATTG	2 cut(s)	247, 770
MflI	RGATCY	4 cut(s)	886, 1143, 1205, 1667
MhlI	GDGCHC	2 cut(s)	1178, 1985
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	9 cut(s)	130, 151, 247, 667, 770, 1213, 1371, 1528, 1811
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	625, 1233
MmeI	TCCRAC	1 cut(s)	1094
Mox20I	TGGCCA	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	1709
MroXI	GAANNNNTTC	1 cut(s)	1371
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	8 cut(s)	99, 408, 837, 1049, 1296, 1353, 1385, 1575
MslI	CAYNNNNRTG	4 cut(s)	1662, 1684, 1702, 1712
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	1779
MspCI	CTTAAG	1 cut(s)	1574
MspI	CCGG	3 cut(s)	361, 1857, 1972
MspR9I	CCNGG	4 cut(s)	361, 362, 810, 1858
MunI	CAATTG	2 cut(s)	247, 770
MvaI	CCWGG	1 cut(s)	810
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	1739, 1959, 1968
NciI	CCSGG	3 cut(s)	361, 362, 1858
NdeI	CATATG	1 cut(s)	1566
NdeII	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
NlaIII	CATG	2 cut(s)	1447, 1707
NlaIV	GGNNCC	6 cut(s)	243, 325, 888, 1096, 1207, 1862
NmeAIII	GCCGAG	2 cut(s)	941, 1142
NmuCI	GTSAC	2 cut(s)	983, 1084
NsbI	TGCGCA	1 cut(s)	1954
NsiI	ATGCAT	1 cut(s)	1709
NspI	RCATGY	1 cut(s)	1707
NspV	TTCGAA	1 cut(s)	67
OliI	CACNNNNGTG	1 cut(s)	1684
PaeI	GCATGC	1 cut(s)	1707
PaeR7I	CTCGAG	1 cut(s)	1139
PasI	CCCWGGG	1 cut(s)	809
PciSI	GCTCTTC	1 cut(s)	1754
PdmI	GAANNNNTTC	1 cut(s)	1371
PfeI	GAWTC	8 cut(s)	51, 593, 902, 932, 1396, 1413, 1888, 2008
PflMI	CCANNNNNTGG	1 cut(s)	896
PkrI	GCNGC	5 cut(s)	637, 660, 1628, 1903, 1996
PleI	GAGTC	2 cut(s)	624, 1233
PpsI	GAGTC	2 cut(s)	624, 1233
Ppu21I	YACGTR	1 cut(s)	689
PshBI	ATTAAT	2 cut(s)	408, 1296
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	6 cut(s)	243, 325, 888, 1096, 1207, 1862
PspPI	GGNCC	4 cut(s)	323, 1479, 1674, 1848
PsuI	RGATCY	4 cut(s)	886, 1143, 1205, 1667
RsaI	GTAC	4 cut(s)	243, 1328, 1501, 1862
RsaNI	GTAC	4 cut(s)	242, 1327, 1500, 1861
RseI	CAYNNNNRTG	4 cut(s)	1662, 1684, 1702, 1712
SapI	GCTCTTC	1 cut(s)	1754
SaqAI	TTAA	8 cut(s)	99, 408, 837, 1049, 1296, 1353, 1385, 1575
SatI	GCNGC	5 cut(s)	636, 659, 1627, 1902, 1995
Sau3AI	GATC	8 cut(s)	643, 673, 886, 1032, 1143, 1205, 1552, 1667
Sau96I	GGNCC	4 cut(s)	323, 1479, 1674, 1848
ScaI	AGTACT	1 cut(s)	1328
SchI	GAGTC	2 cut(s)	625, 1233
ScrFI	CCNGG	4 cut(s)	361, 362, 810, 1858
SduI	GDGCHC	2 cut(s)	1178, 1985
SfaNI	GCATC	5 cut(s)	156, 813, 1176, 1716, 1866
SfcI	CTRYAG	2 cut(s)	802, 1332
Sfr274I	CTCGAG	1 cut(s)	1139
SfuI	TTCGAA	1 cut(s)	67
SinI	GGWCC	3 cut(s)	323, 1479, 1848
SlaI	CTCGAG	1 cut(s)	1139
SmaI	CCCGGG	1 cut(s)	362
SmiMI	CAYNNNNRTG	4 cut(s)	1662, 1684, 1702, 1712
SmlI	CTYRAG	3 cut(s)	1139, 1574, 1937
SmoI	CTYRAG	3 cut(s)	1139, 1574, 1937
SphI	GCATGC	1 cut(s)	1707
Sse9I	AATT	9 cut(s)	130, 151, 247, 667, 770, 1213, 1371, 1528, 1811
SsiI	CCGC	2 cut(s)	1777, 1901
SspI	AATATT	2 cut(s)	1271, 1790
SspMI	CTAG	4 cut(s)	279, 474, 1730, 1998
StyD4I	CCNGG	4 cut(s)	359, 360, 808, 1856
StyI	CCWWGG	3 cut(s)	327, 1593, 1646
TaaI	ACNGT	5 cut(s)	471, 793, 850, 1112, 1130
TaiI	ACGT	2 cut(s)	691, 1847
TaqI	TCGA	6 cut(s)	67, 344, 858, 1140, 1309, 1831
TasI	AATT	9 cut(s)	130, 151, 247, 667, 770, 1213, 1371, 1528, 1811
TatI	WGTACW	1 cut(s)	1326
TauI	GCSGC	1 cut(s)	1904
TfiI	GAWTC	8 cut(s)	51, 593, 902, 932, 1396, 1413, 1888, 2008
Tru1I	TTAA	8 cut(s)	99, 408, 837, 1049, 1296, 1353, 1385, 1575
Tru9I	TTAA	8 cut(s)	99, 408, 837, 1049, 1296, 1353, 1385, 1575
TscAI	CASTG	2 cut(s)	1249, 1627
TseFI	GTSAC	2 cut(s)	983, 1084
TseI	GCWGC	4 cut(s)	635, 658, 1626, 1994
Tsp45I	GTSAC	2 cut(s)	983, 1084
TspDTI	ATGAA	7 cut(s)	50, 507, 537, 749, 1301, 1479, 1617
TspGWI	ACGGA	3 cut(s)	690, 741, 1103
TspMI	CCCGGG	1 cut(s)	360
TspRI	CASTG	2 cut(s)	1249, 1627
Van91I	CCANNNNNTGG	1 cut(s)	896
Vha464I	CTTAAG	1 cut(s)	1574
VpaK11BI	GGWCC	3 cut(s)	323, 1479, 1848
VspI	ATTAAT	2 cut(s)	408, 1296
XapI	RAATTY	5 cut(s)	130, 1213, 1371, 1528, 1811
XceI	RCATGY	1 cut(s)	1707
XhoI	CTCGAG	1 cut(s)	1139
XmaI	CCCGGG	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	1371
XspI	CTAG	4 cut(s)	279, 474, 1730, 1998
ZrmI	AGTACT	1 cut(s)	1328
Zsp2I	ATGCAT	1 cut(s)	1709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.