AT1G57540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009550
Physical Location & Seq
Reverse (-)
21309895 .. 21311521
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57540.3

Sequence Viewer

Length: 312 bp
ATGGCGTTAAGGCAGAAGTTAGGATGGTCAGAAGGAGATCTGATGAGATCAGATGCTAAGCCATGTTCAAGACTGATGAAACAAACAGCTGCCATTTTCACTGTTGGTGGAGCTCTTGGTTTCTGGGTTCTTTGCAGACTTCACTATGGTCCAAGGATCACAGTGCCAAGGAGTCTGCGGTGGGCTGGGTGTGGTGCTTTGTCCGTAAGCACATCAACTGCAATGCTTGTCCGTCTCTTCAGCCCTGAATGTGAACCACAAAACATTGCTGCATATGATAACATCAAAACCCCTCAAGCTTCACTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.27

Weight (kDa)

9.61

Isoelectric Point (pI)

63.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7875 PF25285 1 - 94 6.9e-54 Domain of unknown function (DUF7875)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 69
AluBI AGCT 3 cut(s) 89, 113, 299
AluI AGCT 3 cut(s) 89, 113, 299
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 89, 269
AspS9I GGNCC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 76, 256
BccI CCATC 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 239
BglII AGATCT 1 cut(s) 37
BisI GCNGC 2 cut(s) 90, 270
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 2 cut(s) 91, 271
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmsI GCATC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 152, 167
Bse3DI GCAATG 2 cut(s) 228, 264
BseDI CCNNGG 2 cut(s) 152, 167
BseGI GGATG 1 cut(s) 29
BseMI GCAATG 2 cut(s) 228, 264
BseXI GCAGC 2 cut(s) 76, 256
BseYI CCCAGC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 239
BsmBI CGTCTC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 37, 47, 156
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 228, 264
BssECI CCNNGG 2 cut(s) 152, 167
BssMI GATC 3 cut(s) 37, 47, 156
BssT1I CCWWGG 2 cut(s) 152, 167
Bst4CI ACNGT 2 cut(s) 103, 163
Bst6I CTCTTC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 3 cut(s) 40, 50, 159
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 37, 47, 156
BstV1I GCAGC 2 cut(s) 76, 256
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 99, 168
Cfr13I GGNCC 1 cut(s) 149
CviAII CATG 1 cut(s) 63
CviJI RGCY 6 cut(s) 61, 89, 113, 185, 243, 299
CviKI_1 RGCY 6 cut(s) 61, 89, 113, 185, 243, 299
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 39, 49, 158
DpnII GATC 3 cut(s) 37, 47, 156
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 152, 167
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 152, 167
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 152, 167
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 1 cut(s) 66
FaiI YATR 4 cut(s) 64, 147, 274, 276
FatI CATG 1 cut(s) 62
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 90, 270
FokI GGATG 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 2 cut(s) 90, 270
GluI GCNGC 2 cut(s) 90, 270
GsaI CCCAGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 31, 42, 52
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 103, 163
HpyCH4V TGCA 3 cut(s) 135, 221, 272
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 1 cut(s) 66
Kzo9I GATC 3 cut(s) 37, 47, 156
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 109, 171, 258
Lsp1109I GCAGC 2 cut(s) 76, 256
LweI GCATC 1 cut(s) 43
MalI GATC 3 cut(s) 39, 49, 158
MboI GATC 3 cut(s) 37, 47, 156
MboII GAAGA 1 cut(s) 229
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 115
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 1 cut(s) 303
MseI TTAA 2 cut(s) 8, 310
MspA1I CMGCKG 1 cut(s) 89
NdeI CATATG 1 cut(s) 274
NdeII GATC 3 cut(s) 37, 47, 156
NlaIII CATG 1 cut(s) 66
PkrI GCNGC 2 cut(s) 91, 271
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 8, 310
SatI GCNGC 2 cut(s) 90, 270
Sau3AI GATC 3 cut(s) 37, 47, 156
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 91, 115, 301
SfaNI GCATC 1 cut(s) 43
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SsiI CCGC 1 cut(s) 178
SstI GAGCTC 1 cut(s) 115
StyI CCWWGG 2 cut(s) 152, 167
TaaI ACNGT 2 cut(s) 103, 163
Tru1I TTAA 2 cut(s) 8, 310
Tru9I TTAA 2 cut(s) 8, 310
TscAI CASTG 2 cut(s) 106, 168
TseI GCWGC 2 cut(s) 89, 269
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 2 cut(s) 193, 221
TspRI CASTG 2 cut(s) 106, 168
VpaK11BI GGWCC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.