Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013809.1

Orthogroup ID

OG0009550

Physical Location & Seq

Genomic Coordinates Reverse (-)

50472 .. 50982

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013809.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggcattgaggcgctacttggggttttcagatggcgagctgatgaggtctgattgcaaaccttgttccagattgatgagacagactgccgggattttcacagttggaggaggattagcattctggattctttgtagattgcattatggtcccagaattacagttcctagggctcttcggtggggagcttgtggagctttatctgtgagctcgtccactgctctgctggtacgcctgcttagtccagaatgtgagccccaaaacatagaaacttatgacaagggaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

9.44

Isoelectric Point (pI)

67.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57540 AT1G57540 AT1G57540
fragaria_vesca	FvH4_2g19190 FvH4_6g08490 FvH4_6g08490 FvH4_6g08490 FvH4_6g08490 FvH4_6g08490
malus_domestica	MD12G1199900.v1.1
prunus_persica	Prupe.6G304700_v2.0.a1
pyrus_communis	pycom12g18660
rosa_chinensis	RchiOBHm_Chr3g0458531
rosa_multiflora	Rmu_sc0001634.1_g000001 Rmu_sc0013809.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421000
rosa_rugosa	Rorug03G0029500
rosa_samantha	Rh3AG087800 Rh3BG090900 Rh3CG091000 Rh3DG091800
rosa_wichuraiana	Rw3G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	231
AluBI	AGCT	4 cut(s)	40, 188, 197, 210
AluI	AGCT	4 cut(s)	40, 188, 197, 210
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	73
AspA2I	CCTAGG	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	167
BanII	GRGCYC	3 cut(s)	175, 212, 258
Bbv12I	GWGCWC	1 cut(s)	212
BccI	CCATC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	16
BlnI	CCTAGG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	175, 212, 258
BspLI	GGNNCC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	103, 163
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	38, 236
BstDEI	CTNAG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	38, 236
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	230
CviJI	RGCY	6 cut(s)	40, 173, 188, 197, 210, 256
CviKI_1	RGCY	6 cut(s)	40, 173, 188, 197, 210, 256
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	3 cut(s)	175, 212, 258
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	3 cut(s)	175, 212, 258
ErhI	CCWWGG	1 cut(s)	167
FaiI	YATR	3 cut(s)	147, 266, 276
FaqI	GGGAC	1 cut(s)	135
FriOI	GRGCYC	3 cut(s)	175, 212, 258
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	16
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	31, 52
Hpy188III	TCNNGA	3 cut(s)	69, 124, 245
Hpy8I	GTNNAC	1 cut(s)	216
HpyCH4III	ACNGT	2 cut(s)	103, 163
HpyCH4V	TGCA	2 cut(s)	57, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	185, 194
LpnPI	CCDG	7 cut(s)	82, 103, 109, 166, 212, 248, 258
MaeI	CTAG	1 cut(s)	168
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	3 cut(s)	175, 212, 258
MluCI	AATT	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	3, 39, 101, 104
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	3 cut(s)	175, 212, 258
SetI	ASST	6 cut(s)	42, 50, 64, 190, 199, 212
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	103, 163
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	223
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.