Prupe.6G304700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009550
Physical Location & Seq
Forward (+)
27548646 .. 27550543
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G304700.1

Sequence Viewer

Length: 291 bp
ATGGCGTTGAGGCGCTTTTTAGGGTTTTCGGATGGCGAGCTGATGAGGTCGGATGCAAAACCTTGTTCTAGATTGATGAGACACACTGCTGGTATTTTCAGTGTTGGCGGAGCATTGGGATTCTGGATCCTTTGTAGACTGCATTATGGACCCAGAATTACAGTTCCTAGGAGTCTTCGTTGGGCAGCATGTGGCGCAGTTTCTATGAGCTCAACCACTGCTTTGCTGGTTCGCTTATTTAGTCCAGAGTGTGAGCCCCAAAACATAGCTACTTATGACAAAGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

9.78

Isoelectric Point (pI)

68.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 121, 134
AluBI AGCT 3 cut(s) 40, 210, 269
AluI AGCT 3 cut(s) 40, 210, 269
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 121, 134
ApeKI GCWGC 1 cut(s) 185
AspA2I CCTAGG 1 cut(s) 167
AspLEI GCGC 2 cut(s) 15, 197
AspS9I GGNCC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 167
BamHI GGATCC 1 cut(s) 126
BanII GRGCYC 2 cut(s) 212, 258
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 69, 168
BfoI RGCGCY 1 cut(s) 16
BisI GCNGC 1 cut(s) 186
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 128, 151
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 37, 58
BseXI GCAGC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 212, 258
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 128, 151
BspPI GGATC 2 cut(s) 121, 134
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 38
BstF5I GGATG 2 cut(s) 37, 58
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 2 cut(s) 15, 197
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BtsCI GGATG 2 cut(s) 37, 58
BtsI GCAGTG 2 cut(s) 84, 216
BtsIMutI CAGTG 3 cut(s) 84, 106, 216
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 2 cut(s) 15, 197
Cfr13I GGNCC 1 cut(s) 149
CviAII CATG 1 cut(s) 189
CviJI RGCY 4 cut(s) 40, 210, 256, 269
CviKI_1 RGCY 4 cut(s) 40, 210, 256, 269
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 212, 258
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 212, 258
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 192
FaiI YATR 5 cut(s) 147, 190, 206, 266, 276
FatI CATG 1 cut(s) 188
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 44, 65
FriOI GRGCYC 2 cut(s) 212, 258
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 69, 168
GlaI GCGC 2 cut(s) 14, 196
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 16
HhaI GCGC 2 cut(s) 15, 197
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 2 cut(s) 13, 195
HinP1I GCGC 2 cut(s) 13, 195
HinfI GANTC 2 cut(s) 120, 172
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 31, 52
Hpy188III TCNNGA 3 cut(s) 69, 124, 245
Hpy8I GTNNAC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 56, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 2 cut(s) 13, 195
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 75, 109, 166, 212, 258
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 69, 168
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 167
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 212, 258
MluCI AATT 2 cut(s) 156, 286
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 2 cut(s) 3, 39
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 128, 151
NspI RCATGY 1 cut(s) 192
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 128, 151
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 126
SacI GAGCTC 1 cut(s) 212
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 2 cut(s) 212, 258
SetI ASST 5 cut(s) 42, 50, 64, 212, 271
SfaNI GCATC 1 cut(s) 43
SinI GGWCC 1 cut(s) 149
Sse9I AATT 2 cut(s) 156, 286
SsiI CCGC 1 cut(s) 108
SspMI CTAG 2 cut(s) 69, 168
SstI GAGCTC 1 cut(s) 212
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 163
TasI AATT 2 cut(s) 156, 286
TfiI GAWTC 1 cut(s) 120
TscAI CASTG 3 cut(s) 91, 106, 223
TseI GCWGC 1 cut(s) 185
TspRI CASTG 3 cut(s) 91, 106, 223
VpaK11BI GGWCC 1 cut(s) 149
XbaI TCTAGA 1 cut(s) 68
XceI RCATGY 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 2 cut(s) 69, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.