FvH4_2g19190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009550
Physical Location & Seq
Forward (+)
16356561 .. 16358137
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19190.t1

Sequence Viewer

Length: 291 bp
ATGGCATTGAGGTGCTACTTGGGGTTTTTAGATGGTGAGCTGATGAGGTCGGATTGTAAACCGTGTTCCAGATTGATGAGACAGACTGCCGGTATCTTTACAGTTGGAGGGGCATTTGGATTCTGGATTCTTTGTAGATTGCATTATGGTCCCAGAATTACAGTTCCTAGGGCACTTCGATGGGGAGCTTGTGGAGCTTTATCTGTGAGCTCATCCACTGCTTTGTTGGTTCGCTTGCTTAGTCCAGAATGTGAGCCCCAAAACATAGAAACTTATGATAAGGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.63

Weight (kDa)

9.1

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7875 PF25285 1 - 95 2.4e-51 Domain of unknown function (DUF7875)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 4 cut(s) 40, 188, 197, 210
AluI AGCT 4 cut(s) 40, 188, 197, 210
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 73
AspA2I CCTAGG 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 175
BanII GRGCYC 2 cut(s) 212, 258
Bbv12I GWGCWC 1 cut(s) 212
BccI CCATC 2 cut(s) 26, 174
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 168
BlnI CCTAGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 135
Bsp1286I GDGCHC 3 cut(s) 175, 212, 258
BspLI GGNNCC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 63, 103, 163
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSLI GKGCMC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 149
CviJI RGCY 5 cut(s) 40, 188, 197, 210, 256
CviKI_1 RGCY 5 cut(s) 40, 188, 197, 210, 256
DdeI CTNAG 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 212, 258
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 212, 258
ErhI CCWWGG 1 cut(s) 167
FaiI YATR 3 cut(s) 147, 266, 276
FaqI GGGAC 1 cut(s) 135
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 2 cut(s) 212, 258
FspBI CTAG 1 cut(s) 168
HapII CCGG 1 cut(s) 90
HinfI GANTC 2 cut(s) 120, 127
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 69, 124, 245
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 63, 103, 163
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 239
LmnI GCTCC 2 cut(s) 185, 194
LpnPI CCDG 5 cut(s) 82, 103, 109, 166, 258
MaeI CTAG 1 cut(s) 168
MhlI GDGCHC 3 cut(s) 175, 212, 258
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 30, 85
MnlI CCTC 3 cut(s) 3, 39, 101
MslI CAYNNNNRTG 2 cut(s) 10, 178
MspI CCGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 120, 127
Psp124BI GAGCTC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 149
PsrI GAACNNNNNNTAC 2 cut(s) 49, 81
RseI CAYNNNNRTG 2 cut(s) 10, 178
SacI GAGCTC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 149
SduI GDGCHC 3 cut(s) 175, 212, 258
SetI ASST 6 cut(s) 14, 42, 50, 190, 199, 212
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 10, 178
Sse9I AATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 212
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 3 cut(s) 63, 103, 163
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 156
TfiI GAWTC 2 cut(s) 120, 127
TscAI CASTG 1 cut(s) 223
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.