Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

2363321 .. 2367775

Gene Structure 4455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0029500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCGGGCAATCCGCCTGAGGGACTCGGAGACGATTTCTTCGAGCAGATCATGGCCGTTCCTCAAACGTACAGCGGCTCCGGCTCCGCTGCTGACTCAGCTGGTGGTGGATATGGAGACGTGGGGTCCATGCCCATGGTGCTGCAGTTGGGCTCCGGAACCGGGTCTTCTTCTGGCTCCGGCGTCGGGTACAGAGGAGGAGTCGGGTCGGTTGGGATGGGTATGGGCATGCCTTTGGGTCTGAATTTGGAGCAGGGGTTTCTTGGACAAGACAGGTTCAGAGATGAAGTTGAACCCAACTCTAACACCACCAACAACAACAACAACGGTAGCAGTTCTAATGAAAGAGATTCGGTTCACATGACGAGTTTGTTTCCGGCATTTGGACATTTGCAAAACCACTCTGTCCGGCCAACGCCGCCGCCTCCTCCTCAGCCTCACCAGCAGTTTCATAGCCAACCAGCACCGGGGCCAGCTGCTGCTCCCCATCACCCTCCTGCTATCCGCCCAAGGGTCCGAGCAAGACGAGGTCAAGCAACAGATCCCCACAGTATTGCCGAGCGGTTACGCCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAATTGGTACCTAGTTGTAACAAGACAGATAGGGCAGCTATGCTTGACGAAATCGTCGATTATGTGAAATTTCTAAGGCTCCAAGTAAAGGTTTTGAGCATGAGTAGACTTGGAGGAGCAGGTGCAGTGGCTCAGCTTGTAGCTGATGTACCCTTATCAGCAGTTGAGGGAGAGGGGATTGAAGGAGGAACCAATAATCAACAAGCATGGGAGAAGTGGTCAAATGATGGCACAGAGCAACAGGTAGCTAAGCTCATGGACGAAGATGTAGGAGCTGCCATGCAATACCTTCAATCCAAGGCACTTTGCATCATGCCCATATCACTCGCTCCTGCAATTTTCCGGACACATCAGCCGGACGCAACGACAATGGTTAAGCCAGAATCACACAACTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

335

Amino Acids

35.57

Weight (kDa)

5.8

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	183 - 228	1.1e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	187 - 231	4.7e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
AasI	GACNNNNNNGTC	1 cut(s)	659
Acc36I	ACCTGC	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	613
AccBSI	CCGCTC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	712
AccIII	TCCGGA	2 cut(s)	155, 948
AciI	CCGC	8 cut(s)	5, 14, 75, 87, 419, 422, 505, 562
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	2 cut(s)	54, 410
AcsI	RAATTY	2 cut(s)	244, 674
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	4 cut(s)	71, 191, 615, 756
AfiI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 467, 511, 694
AgsI	TTSAA	3 cut(s)	293, 788, 899
AhdI	GACNNNNNGTC	1 cut(s)	124
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	8 cut(s)	101, 476, 644, 742, 749, 854, 859, 881
AluI	AGCT	8 cut(s)	101, 476, 644, 742, 749, 854, 859, 881
Alw26I	GTCTC	2 cut(s)	24, 111
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	1 cut(s)	479
Aor13HI	TCCGGA	2 cut(s)	155, 948
AoxI	GGCC	3 cut(s)	54, 410, 470
ApeKI	GCWGC	6 cut(s)	89, 142, 476, 479, 641, 881
ApoI	RAATTY	2 cut(s)	244, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp718I	GGTACC	1 cut(s)	613
AspS9I	GGNCC	3 cut(s)	126, 470, 514
AsuC2I	CCSGG	3 cut(s)	163, 468, 572
AsuHPI	GGTGA	2 cut(s)	431, 482
AvaII	GGWCC	2 cut(s)	126, 514
AxyI	CCTNAGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	613
BanII	GRGCYC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	6 cut(s)	76, 129, 463, 466, 653, 868
BccI	CCATC	3 cut(s)	211, 495, 827
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	163, 468, 572
BcoDI	GTCTC	2 cut(s)	24, 111
BfaI	CTAG	2 cut(s)	618, 1006
BfmI	CTRYAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	716
BisI	GCNGC	9 cut(s)	76, 90, 143, 419, 422, 477, 480, 642, 882
BlpI	GCTNAGC	2 cut(s)	738, 855
BlsI	GCNGC	9 cut(s)	77, 91, 144, 420, 423, 478, 481, 643, 883
Bme1390I	CCNGG	3 cut(s)	163, 468, 572
Bme18I	GGWCC	2 cut(s)	126, 514
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	126, 470, 514
BmrFI	CCNGG	3 cut(s)	163, 468, 572
BmsI	GCATC	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	2 cut(s)	738, 855
BpuMI	CCSGG	3 cut(s)	163, 468, 572
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	135, 467, 509, 903
BsaWI	WCCGGW	2 cut(s)	155, 948
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 242, 272, 809, 839
Bsc4I	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 467, 511, 694
Bse21I	CCTNAGG	1 cut(s)	18
BseAI	TCCGGA	2 cut(s)	155, 948
BseDI	CCNNGG	4 cut(s)	135, 467, 509, 903
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 467, 511, 694
BseMII	CTCAG	4 cut(s)	9, 111, 446, 752
BseRI	GAGGAG	5 cut(s)	210, 213, 417, 420, 735
BseXI	GCAGC	6 cut(s)	76, 129, 463, 466, 653, 868
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	3 cut(s)	56, 412, 472
BshNI	GGYRCC	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	7 cut(s)	20, 162, 186, 383, 467, 511, 694
BsmAI	GTCTC	2 cut(s)	24, 111
BsmBI	CGTCTC	2 cut(s)	24, 111
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	3 cut(s)	56, 412, 472
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp13I	TCCGGA	2 cut(s)	155, 948
Bsp143I	GATC	2 cut(s)	48, 541
Bsp1720I	GCTNAGC	2 cut(s)	738, 855
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	8 cut(s)	5, 14, 75, 87, 419, 422, 505, 562
BspANI	GGCC	3 cut(s)	56, 412, 472
BspCNI	CTCAG	4 cut(s)	10, 110, 445, 751
BspEI	TCCGGA	2 cut(s)	155, 948
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	613
BsrBI	CCGCTC	1 cut(s)	562
BssECI	CCNNGG	4 cut(s)	135, 467, 509, 903
BssMI	GATC	2 cut(s)	48, 541
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	135, 509, 903
Bst4CI	ACNGT	2 cut(s)	329, 551
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	7, 230, 474
BstDEI	CTNAG	6 cut(s)	18, 97, 432, 680, 738, 855
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	51, 544
BstMAI	GTCTC	2 cut(s)	24, 111
BstMBI	GATC	2 cut(s)	48, 541
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 98, 139, 418, 442
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	3 cut(s)	161, 466, 570
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	6 cut(s)	76, 129, 463, 466, 653, 868
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	56, 412, 472
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	738
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	3 cut(s)	7, 230, 474
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	126, 470, 514
CseI	GACGC	2 cut(s)	172, 974
Csp6I	GTAC	4 cut(s)	70, 190, 614, 755
CviQI	GTAC	4 cut(s)	70, 190, 614, 755
DdeI	CTNAG	6 cut(s)	18, 97, 432, 680, 738, 855
DpnI	GATC	2 cut(s)	50, 543
DpnII	GATC	2 cut(s)	48, 541
DrdI	GACNNNNNNGTC	1 cut(s)	659
DriI	GACNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	659
EaeI	YGGCCR	2 cut(s)	54, 410
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	494
Eco130I	CCWWGG	3 cut(s)	135, 509, 903
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	126, 514
Eco81I	CCTNAGG	1 cut(s)	18
EcoT14I	CCWWGG	3 cut(s)	135, 509, 903
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	3 cut(s)	135, 509, 903
Esp3I	CGTCTC	2 cut(s)	24, 111
FaqI	GGGAC	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	9 cut(s)	76, 90, 143, 419, 422, 477, 480, 642, 882
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	9 cut(s)	76, 90, 143, 419, 422, 477, 480, 642, 882
FspBI	CTAG	2 cut(s)	618, 1006
GluI	GCNGC	9 cut(s)	76, 90, 143, 419, 422, 477, 480, 642, 882
HaeIII	GGCC	3 cut(s)	56, 412, 472
HgaI	GACGC	2 cut(s)	172, 974
Hin1I	GRCGYC	1 cut(s)	183
HinfI	GANTC	5 cut(s)	24, 95, 201, 350, 989
HphI	GGTGA	2 cut(s)	431, 482
Hpy166II	GTNNAC	2 cut(s)	358, 713
Hpy188I	TCNGA	4 cut(s)	29, 243, 281, 518
Hpy188III	TCNNGA	2 cut(s)	156, 949
Hpy8I	GTNNAC	2 cut(s)	358, 713
Hpy99I	CGWCG	2 cut(s)	188, 665
HpyAV	CCTTC	3 cut(s)	589, 782, 905
HpyCH4III	ACNGT	2 cut(s)	329, 551
HpyCH4IV	ACGT	2 cut(s)	68, 120
HpyCH4V	TGCA	8 cut(s)	145, 394, 584, 604, 731, 889, 915, 941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 98, 139, 418, 442
HpyF3I	CTNAG	6 cut(s)	18, 97, 432, 680, 738, 855
HpySE526I	ACGT	2 cut(s)	68, 120
Hsp92I	GRCGYC	1 cut(s)	183
Kpn2I	TCCGGA	2 cut(s)	155, 948
KpnI	GGTACC	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	48, 541
Lsp1109I	GCAGC	6 cut(s)	76, 129, 463, 466, 653, 868
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	2 cut(s)	618, 1006
MaeII	ACGT	2 cut(s)	68, 120
MaeIII	GTNAC	2 cut(s)	564, 623
MalI	GATC	2 cut(s)	50, 543
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	2 cut(s)	48, 541
MboII	GAAGA	5 cut(s)	31, 159, 162, 881, 993
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	5 cut(s)	244, 579, 608, 674, 942
MlyI	GAGTC	3 cut(s)	18, 89, 210
MroI	TCCGGA	2 cut(s)	155, 948
MseI	TTAA	1 cut(s)	981
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	4 cut(s)	75, 89, 101, 476
MspR9I	CCNGG	3 cut(s)	163, 468, 572
MwoI	GCNNNNNNNGC	5 cut(s)	81, 98, 139, 418, 442
NciI	CCSGG	3 cut(s)	163, 468, 572
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	48, 541
NmeAIII	GCCGAG	1 cut(s)	583
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 660
PfeI	GAWTC	2 cut(s)	350, 989
PflFI	GACNNNGTC	1 cut(s)	528
PkrI	GCNGC	9 cut(s)	77, 91, 144, 420, 423, 478, 481, 643, 883
PleI	GAGTC	3 cut(s)	18, 89, 209
PpsI	GAGTC	3 cut(s)	18, 89, 209
PspPI	GGNCC	3 cut(s)	126, 470, 514
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	528
PvuII	CAGCTG	2 cut(s)	101, 476
RsaI	GTAC	4 cut(s)	71, 191, 615, 756
RsaNI	GTAC	4 cut(s)	70, 190, 614, 755
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	981
SatI	GCNGC	9 cut(s)	76, 90, 143, 419, 422, 477, 480, 642, 882
Sau3AI	GATC	2 cut(s)	48, 541
Sau96I	GGNCC	3 cut(s)	126, 470, 514
SchI	GAGTC	3 cut(s)	18, 89, 210
ScrFI	CCNGG	3 cut(s)	163, 468, 572
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	924
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	126, 514
SmiMI	CAYNNNNRTG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	5 cut(s)	244, 579, 608, 674, 942
SsiI	CCGC	8 cut(s)	5, 14, 75, 87, 419, 422, 505, 562
SspMI	CTAG	2 cut(s)	618, 1006
StyD4I	CCNGG	3 cut(s)	161, 466, 570
StyI	CCWWGG	3 cut(s)	135, 509, 903
TaaI	ACNGT	2 cut(s)	329, 551
TaiI	ACGT	2 cut(s)	71, 123
TaqI	TCGA	2 cut(s)	42, 663
TasI	AATT	5 cut(s)	244, 579, 608, 674, 942
TauI	GCSGC	3 cut(s)	78, 421, 424
TfiI	GAWTC	2 cut(s)	350, 989
Tru1I	TTAA	1 cut(s)	981
Tru9I	TTAA	1 cut(s)	981
TscAI	CASTG	1 cut(s)	738
TseI	GCWGC	6 cut(s)	89, 142, 476, 479, 641, 881
TspDTI	ATGAA	4 cut(s)	300, 357, 440, 608
TspRI	CASTG	1 cut(s)	738
Tth111I	GACNNNGTC	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	126, 514
XapI	RAATTY	2 cut(s)	244, 674
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	712
XspI	CTAG	2 cut(s)	618, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.