FvH4_6g08500

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5033549 .. 5037252
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08500.t1

Sequence Viewer

Length: 1533 bp
ATGTGGAGTAAATATATCTTGGTGGCTTTGTACGTATGGACCTTGATCTGTGCACTGCTTCCTGCTTCCTCTAATGGCCTAGTGAGGATCGGTCTGAAGAAGCGAACCTTGGATGTTCAGACCATCAAAGCTGCCAGAGCAGCAAGACTGGCAAAGTTCAGAGGGACTAGTTTAAAGAGCATGTTTGATCATAATAATTTGGGTAGTTCAGATGATGAAGATATAGTACCCCTGGAGAATTATATGGACGCTCAATACTATGGTGAGATTGGTATTGGCTCACCACCTCAGAACTTTACTGTCATATTCGACACAGGAAGTTCCAATCTTTGGGTGCCATCAGCAAAGTGTTACTTGTCTATTGCATGCTATTTCCATACTCGGTACAAGTCAAGCAAGTCGAGTACTTATACTGCAAATGGAAAATCTGCTCAAATAACATATGGAAGTGGATCCATTTCTGGTTTCTTCAGTGAGGATAATGTTCTAGTCGGCAATGTAGTTGTCAAAAATCAGGACTTCATCGAGGCCACACGAGAAGGAAGTCTCACATTTGTCTTGGCAAAGTTTGATGGACTTCTAGGGCTTGGATTTCAGGAAATCTCTGTTGGAAATGCTACCCCAGTGTGGTCTACAATGGCAGAGCAAGGTCTGTTAAATGATGAGGTCTTCTCATTCTGGATTAATCGAGATGCAGATGCAGAAGTTGGAGGTGAACTTGTTTTTGGTGGTGTTGACAAAAAACACTATAATGGAAAGCACACCTATGTTCCAGTTACTAAAAAGGGCTACTGGCAGTTCAGTTTGGGAGATCTCAAAATCGGAAACCAGTCAACAGGTGTTTGTGAGGGGGGTTGTGCTGCTATTGTGGATTCAGGAACGTCCTTACTCGCTGGCCCGACATCTATTGTGACTGAAGTTAACCATGCTATTGGAGCTGAAGGAGTAGTGAGTACAGAATGTAAACAAATTGTTTCTCAATATGGAGACTTGATATGGAATCTTCTGATATCAGGGGTACAACCTGACCAAGTATGCAAGCAGCTTGGTTTGTGTGTTTTGAATGGGGGTCAGTATGTGAGTGCTGGAATTGAAACAGTGATCGAAAGAGAAGATAGGGAGGAATCATCTGTTGGTGACACTGCCTTGTGCACAGCTTGTGAGATGGCTGTTGTTTGGGCCCAGAATCAGCTTAAACAAAAAGGAACAAAAGAAAGAGTACTTCAGTACATTGATCAGCTGTGTGAGAGCCTGCCAAGTCCAATGGGAGAGTCGATAATTGACTGCAATAGCATTTCAAGCATGCCGAACATTACCTTCACCATTGGAGATAAGCCTTTTGTTCTCACTCCACAACAGTATGTTCTGAAAACTGGCCAAGGCATAGCTGGTATCTGCATCAGTGGTTTTACAGCTTTCGATATACCCCCTCCAACGGGTCCCCTTTGGATCCTTGGAGATGTATTTATGGGGGCTTATCACACAGTTTTCGACTTTGGCAACCTTGAGATTGGATTTGCTGAAGCCGCTTAA

Protein Analysis

511

Amino Acids

55.09

Weight (kDa)

4.88

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 85 - 509 6.2e-115 Eukaryotic aspartyl protease
TAXi_N PF14543 86 - 244 6.1e-11 Xylanase inhibitor N-terminal
SapB_2 PF03489 319 - 352 9.2e-15 Saposin-like type B, region 2
SapB_1 PF05184 383 - 419 1.9e-11 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 330
AccI GTMKAC 1 cut(s) 632
AciI CCGC 1 cut(s) 1527
AclWI GGATC 5 cut(s) 95, 447, 460, 1444, 1457
AcoI YGGCCR 1 cut(s) 1375
AcuI CTGAAG 5 cut(s) 116, 454, 936, 960, 1208
AfaI GTAC 8 cut(s) 32, 228, 386, 406, 955, 1020, 1221, 1229
AfiI CCNNNNNNNGG 4 cut(s) 330, 627, 1435, 1436
AgsI TTSAA 3 cut(s) 1063, 1094, 1299
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 1 cut(s) 231
AjuI GAANNNNNNNTTGG 8 cut(s) 92, 124, 591, 623, 708, 740, 1116, 1148
AluBI AGCT 8 cut(s) 131, 938, 1045, 1157, 1192, 1240, 1388, 1415
AluI AGCT 8 cut(s) 131, 938, 1045, 1157, 1192, 1240, 1388, 1415
Alw21I GWGCWC 2 cut(s) 55, 1154
Alw26I GTCTC 2 cut(s) 551, 981
Alw44I GTGCAC 2 cut(s) 51, 1150
AlwI GGATC 5 cut(s) 95, 447, 460, 1444, 1457
AoxI GGCC 5 cut(s) 76, 528, 895, 1179, 1375
ApaI GGGCCC 1 cut(s) 1183
ApaLI GTGCAC 2 cut(s) 51, 1150
ApeKI GCWGC 4 cut(s) 131, 140, 860, 1042
AseI ATTAAT 1 cut(s) 684
AspS9I GGNCC 5 cut(s) 39, 896, 1179, 1180, 1439
AsuHPI GGTGA 5 cut(s) 273, 275, 725, 1148, 1312
AvaII GGWCC 2 cut(s) 39, 1439
BaeGI GKGCMC 3 cut(s) 55, 1154, 1183
BalI TGGCCA 1 cut(s) 1377
BamHI GGATCC 2 cut(s) 452, 1449
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 1183
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
BauI CACGAG 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 2 cut(s) 55, 1154
BbvI GCAGC 4 cut(s) 118, 152, 847, 1054
BccI CCATC 4 cut(s) 131, 346, 566, 1159
BciT130I CCWGG 1 cut(s) 233
BclI TGATCA 2 cut(s) 187, 1234
BcoDI GTCTC 2 cut(s) 551, 981
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 4 cut(s) 80, 168, 488, 581
BglII AGATCT 1 cut(s) 811
BisI GCNGC 5 cut(s) 132, 141, 861, 1043, 1527
BlsI GCNGC 5 cut(s) 133, 142, 862, 1044, 1528
BmcAI AGTACT 2 cut(s) 406, 1221
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 2 cut(s) 39, 1439
BmgT120I GGNCC 5 cut(s) 39, 896, 1179, 1180, 1439
BmiI GGNNCC 6 cut(s) 336, 454, 1181, 1440, 1441, 1451
BmrFI CCNGG 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 3 cut(s) 682, 688, 1407
BmuI ACTGGG 1 cut(s) 617
BpiI GAAGAC 1 cut(s) 661
BplI GAGNNNNNCTC 2 cut(s) 656, 688
BpmI CTGGAG 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1526
BsaAI YACGTR 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 108, 231, 1378, 1453
Bsc4I CCNNNNNNNGG 4 cut(s) 330, 627, 1435, 1436
Bse1I ACTGG 6 cut(s) 153, 623, 773, 797, 829, 1378
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 4 cut(s) 108, 231, 1378, 1453
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 4 cut(s) 330, 627, 1435, 1436
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 6 cut(s) 153, 623, 773, 797, 829, 1378
BseSI GKGCMC 3 cut(s) 55, 1154, 1183
BseXI GCAGC 4 cut(s) 118, 152, 847, 1054
BshFI GGCC 5 cut(s) 78, 530, 897, 1181, 1377
BshNI GGYRCC 1 cut(s) 334
BsiHKAI GWGCWC 2 cut(s) 55, 1154
BslFI GGGAC 2 cut(s) 178, 1425
BslI CCNNNNNNNGG 4 cut(s) 330, 627, 1435, 1436
BsmAI GTCTC 2 cut(s) 551, 981
BsmFI GGGAC 2 cut(s) 178, 1425
BsnI GGCC 5 cut(s) 78, 530, 897, 1181, 1377
Bsp120I GGGCCC 1 cut(s) 1179
Bsp1286I GDGCHC 3 cut(s) 55, 1154, 1183
Bsp143I GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
BspACI CCGC 1 cut(s) 1527
BspANI GGCC 5 cut(s) 78, 530, 897, 1181, 1377
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 6 cut(s) 336, 454, 1181, 1440, 1441, 1451
BspPI GGATC 5 cut(s) 95, 447, 460, 1444, 1457
BspT107I GGYRCC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 6 cut(s) 153, 623, 773, 797, 829, 1378
BssECI CCNNGG 4 cut(s) 108, 231, 1378, 1453
BssMI GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 3 cut(s) 108, 1378, 1453
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 4 cut(s) 301, 1099, 1359, 1486
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 5 cut(s) 367, 895, 1040, 1253, 1304
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 8 cut(s) 48, 90, 190, 455, 814, 1104, 1237, 1452
BstMAI GTCTC 2 cut(s) 551, 981
BstMBI GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
BstMWI GCNNNNNNNGC 6 cut(s) 137, 140, 149, 935, 1299, 1526
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 3 cut(s) 184, 369, 1306
BstSCI CCNGG 1 cut(s) 231
BstSLI GKGCMC 3 cut(s) 55, 1154, 1183
BstSNI TACGTA 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 118, 152, 847, 1054
BstV2I GAAGAC 1 cut(s) 661
BstX2I RGATCY 3 cut(s) 452, 811, 1449
BstXI CCANNNNNNTGG 1 cut(s) 932
BstYI RGATCY 3 cut(s) 452, 811, 1449
BsuRI GGCC 5 cut(s) 78, 530, 897, 1181, 1377
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 2 cut(s) 53, 1140
BtsIMutI CAGTG 6 cut(s) 53, 478, 630, 1104, 1140, 1408
Cac8I GCNNGC 5 cut(s) 367, 895, 1040, 1253, 1304
Cfr13I GGNCC 5 cut(s) 39, 896, 1179, 1180, 1439
CseI GACGC 1 cut(s) 257
Csp6I GTAC 8 cut(s) 31, 227, 385, 405, 954, 1019, 1220, 1228
CviAII CATG 4 cut(s) 181, 366, 926, 1303
CviQI GTAC 8 cut(s) 31, 227, 385, 405, 954, 1019, 1220, 1228
DdeI CTNAG 1 cut(s) 288
DpnI GATC 8 cut(s) 47, 89, 189, 454, 813, 1103, 1236, 1451
DpnII GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 1375
Eco105I TACGTA 1 cut(s) 34
Eco130I CCWWGG 3 cut(s) 108, 1378, 1453
Eco24I GRGCYC 1 cut(s) 1183
Eco32I GATATC 1 cut(s) 1011
Eco47I GGWCC 2 cut(s) 39, 1439
Eco57I CTGAAG 5 cut(s) 116, 454, 936, 960, 1208
EcoO109I RGGNCCY 1 cut(s) 1439
EcoRII CCWGG 1 cut(s) 231
EcoRV GATATC 1 cut(s) 1011
EcoT14I CCWWGG 3 cut(s) 108, 1378, 1453
EcoT38I GRGCYC 1 cut(s) 1183
ErhI CCWWGG 3 cut(s) 108, 1378, 1453
FaeI CATG 4 cut(s) 184, 369, 929, 1306
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 338, 370
FaqI GGGAC 2 cut(s) 178, 1425
FatI CATG 4 cut(s) 180, 365, 925, 1302
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 2 cut(s) 187, 1234
FblI GTMKAC 1 cut(s) 632
Fnu4HI GCNGC 5 cut(s) 132, 141, 861, 1043, 1527
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 1183
Fsp4HI GCNGC 5 cut(s) 132, 141, 861, 1043, 1527
FspBI CTAG 4 cut(s) 80, 168, 488, 581
GluI GCNGC 5 cut(s) 132, 141, 861, 1043, 1527
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 5 cut(s) 78, 530, 897, 1181, 1377
HgaI GACGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 184, 369, 929, 1306
HincII GTYRAC 3 cut(s) 736, 834, 922
HindII GTYRAC 3 cut(s) 736, 834, 922
HinfI GANTC 5 cut(s) 872, 1000, 1124, 1186, 1271
HpaI GTTAAC 1 cut(s) 922
HphI GGTGA 5 cut(s) 273, 275, 725, 1148, 1312
Hpy166II GTNNAC 8 cut(s) 53, 633, 716, 736, 834, 922, 965, 1152
Hpy188I TCNGA 8 cut(s) 96, 120, 161, 211, 291, 824, 1008, 1368
Hpy188III TCNNGA 5 cut(s) 515, 596, 679, 689, 876
Hpy8I GTNNAC 8 cut(s) 53, 633, 716, 736, 834, 922, 965, 1152
HpyAV CCTTC 3 cut(s) 533, 935, 1327
HpyCH4III ACNGT 4 cut(s) 301, 1099, 1359, 1486
HpyCH4IV ACGT 2 cut(s) 33, 881
HpyCH4V TGCA 9 cut(s) 53, 365, 416, 695, 701, 1038, 1152, 1287, 1398
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 140, 149, 935, 1299, 1526
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 2 cut(s) 33, 881
Hsp92II CATG 4 cut(s) 184, 369, 929, 1306
KflI GGGWCCC 1 cut(s) 1439
Ksp22I TGATCA 2 cut(s) 187, 1234
KspAI GTTAAC 1 cut(s) 922
Kzo9I GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
LmnI GCTCC 1 cut(s) 935
Lsp1109I GCAGC 4 cut(s) 118, 152, 847, 1054
LweI GCATC 3 cut(s) 682, 688, 1407
MaeI CTAG 4 cut(s) 80, 168, 488, 581
MaeII ACGT 2 cut(s) 33, 881
MaeIII GTNAC 4 cut(s) 350, 775, 910, 1136
MalI GATC 8 cut(s) 47, 89, 189, 454, 813, 1103, 1236, 1451
MboI GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
MboII GAAGA 6 cut(s) 109, 230, 460, 661, 995, 1124
MflI RGATCY 3 cut(s) 452, 811, 1449
MhlI GDGCHC 3 cut(s) 55, 1154, 1183
MlsI TGGCCA 1 cut(s) 1377
MluCI AATT 5 cut(s) 196, 238, 969, 1089, 1278
MluNI TGGCCA 1 cut(s) 1377
MlyI GAGTC 1 cut(s) 1280
MmeI TCCRAC 3 cut(s) 589, 688, 1457
Mox20I TGGCCA 1 cut(s) 1377
MscI TGGCCA 1 cut(s) 1377
MseI TTAA 6 cut(s) 173, 656, 684, 921, 1194, 1531
MslI CAYNNNNRTG 2 cut(s) 750, 765
Msp20I TGGCCA 1 cut(s) 1377
MspA1I CMGCKG 1 cut(s) 1240
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 6 cut(s) 137, 140, 149, 935, 1299, 1526
NdeI CATATG 1 cut(s) 442
NdeII GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
NlaIII CATG 4 cut(s) 184, 369, 929, 1306
NlaIV GGNNCC 6 cut(s) 336, 454, 1181, 1440, 1441, 1451
NmuCI GTSAC 2 cut(s) 910, 1136
NspI RCATGY 3 cut(s) 184, 369, 1306
PaeI GCATGC 2 cut(s) 369, 1306
PfeI GAWTC 4 cut(s) 872, 1000, 1124, 1186
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 5 cut(s) 133, 142, 862, 1044, 1528
PleI GAGTC 1 cut(s) 1279
PpsI GAGTC 1 cut(s) 1279
Ppu21I YACGTR 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 1439
PshBI ATTAAT 1 cut(s) 684
Psp5II RGGWCCY 1 cut(s) 1439
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 6 cut(s) 336, 454, 1181, 1440, 1441, 1451
PspOMI GGGCCC 1 cut(s) 1179
PspPI GGNCC 5 cut(s) 39, 896, 1179, 1180, 1439
PspPPI RGGWCCY 1 cut(s) 1439
PsuI RGATCY 3 cut(s) 452, 811, 1449
PvuII CAGCTG 1 cut(s) 1240
RsaI GTAC 8 cut(s) 32, 228, 386, 406, 955, 1020, 1221, 1229
RsaNI GTAC 8 cut(s) 31, 227, 385, 405, 954, 1019, 1220, 1228
RseI CAYNNNNRTG 2 cut(s) 750, 765
SaqAI TTAA 6 cut(s) 173, 656, 684, 921, 1194, 1531
SatI GCNGC 5 cut(s) 132, 141, 861, 1043, 1527
Sau3AI GATC 8 cut(s) 45, 87, 187, 452, 811, 1101, 1234, 1449
Sau96I GGNCC 5 cut(s) 39, 896, 1179, 1180, 1439
ScaI AGTACT 2 cut(s) 406, 1221
SchI GAGTC 1 cut(s) 1280
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 3 cut(s) 55, 1154, 1183
SfaNI GCATC 3 cut(s) 682, 688, 1407
SinI GGWCC 2 cut(s) 39, 1439
SmiMI CAYNNNNRTG 2 cut(s) 750, 765
SmlI CTYRAG 1 cut(s) 1505
SmoI CTYRAG 1 cut(s) 1505
SnaBI TACGTA 1 cut(s) 34
SpeI ACTAGT 1 cut(s) 167
SphI GCATGC 2 cut(s) 369, 1306
Sse9I AATT 5 cut(s) 196, 238, 969, 1089, 1278
SsiI CCGC 1 cut(s) 1527
SspMI CTAG 4 cut(s) 80, 168, 488, 581
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 3 cut(s) 108, 1378, 1453
TaaI ACNGT 4 cut(s) 301, 1099, 1359, 1486
TaiI ACGT 2 cut(s) 36, 884
TaqI TCGA 8 cut(s) 309, 401, 525, 688, 1104, 1274, 1419, 1491
TaqII GACCGA 1 cut(s) 80
TasI AATT 5 cut(s) 196, 238, 969, 1089, 1278
TatI WGTACW 4 cut(s) 404, 953, 1219, 1227
TauI GCSGC 1 cut(s) 1529
TfiI GAWTC 4 cut(s) 872, 1000, 1124, 1186
Tru1I TTAA 6 cut(s) 173, 656, 684, 921, 1194, 1531
Tru9I TTAA 6 cut(s) 173, 656, 684, 921, 1194, 1531
TscAI CASTG 6 cut(s) 60, 478, 630, 1104, 1147, 1408
TseFI GTSAC 2 cut(s) 910, 1136
TseI GCWGC 4 cut(s) 131, 140, 860, 1042
Tsp45I GTSAC 2 cut(s) 910, 1136
TspDTI ATGAA 2 cut(s) 231, 511
TspRI CASTG 6 cut(s) 60, 478, 630, 1104, 1147, 1408
Van91I CCANNNNNTGG 1 cut(s) 330
VneI GTGCAC 2 cut(s) 51, 1150
VpaK11BI GGWCC 2 cut(s) 39, 1439
VspI ATTAAT 1 cut(s) 684
XceI RCATGY 3 cut(s) 184, 369, 1306
XcmI CCANNNNNNNNNTGG 1 cut(s) 1385
XmiI GTMKAC 1 cut(s) 632
XspI CTAG 4 cut(s) 80, 168, 488, 581
ZrmI AGTACT 2 cut(s) 406, 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.