Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Forward (+)

55916305 .. 55920092

Gene Structure 3788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG298900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGATCATGGCGTTTAAGTGGGTTCTAGTTGCAATATGGATATGGGTTTGGTCAGCTTACTTGGCTGCTACACAATCCGATGATGGGTTACTGAGGATTAGTCTAAAGAAGCATCCTTTAGACTTTAGTAGGATAAATGCTGCAAGGATCACCAATAGAGTAGATTCTCAACAGAGAGATAATGGGGATGATCTTAAAGCTAACATTGTATATTTGAAGAACTATCTTGACACCCAATTTTATGGAGAAATTGGTATTGGGACTCCCCCACAAACCTTTGCTGTTGTCTTTGATACTGGAAGCGCCAATTTTTGGGTCCCGTCTTCGAGATGCATCCTTTCTATTGCTTGCTATTTTCATTCTAAATACAGGGCAACTATGTCAAGTACCTATACCAAAATTGGAATACCCTGCAAAATTCCTTATGGCTCTGGTTCCATTTCCGGCTACTTCAGTGAGGATAATGTTAAAGTTGGGGAAATTATCGTTAAGCATCAAGAATTTGTTGAGGTTACAAGGGAAGGAGTTGTTGCATTCTTAACCGCACGGTTTGATGGGATTTTTGGACTTGGATTTCAGGATATTTCTGTTGGTGAAGCCACACCAGTGTGGTATAACATGGTGCAACAAGGTCGTATGAGCCAGAAGATTTTCTCTATTTGGCTTAATCATGATCCAAAATCACCAGTGGGAGGTGAAATCGTCTTTGGAGGATATGATTGGAGGCACTTTACGGGTGATCACACTTATGTCCCGATTTCACACAATGGATACTGGCAGATTGAGGTGGGAGATATTATTGTTGCAGACTTTTCAACAGGATTCTGCAAGGGTGGCTGTGCTGCCATTTTGGACTCAGGGACATCCTTACTTGCCGGTCCAACTACTGTTGTGGCTCAGATCAACCATGCCATTGGAGCAGAAGGATTTGCAAGCTTGGAATGTAAAACTGTCGTTTCCACTTATGGAAATCTGATATGGGATTATTTAGTATCTGGGGTACGGCCTGATGTACTGTGTGTGGATATCAGCCTATGTTCGTATGATGGATCTCGTCTTGTAAACAATCGTATTGAGACAGTGGTTCGGAATGGAACCCGGAAGGAGGCATCCGTTGATGAAACTCCTTTATGTACGTTGTGTGAGATGATTGCCTATTGGATTCAACTTCAACTTAGAAAACAAGTATCAAGGGAACAAGTATTTAAGCATGTGAATGAGTTGTGTGAGAAGCTTCCAAATCCTGTGCGAAGATCGTTTGTCAACTGTGATAACGTTGCAGCCATGCCAGATGTTTCATTCGTGATTGCAAACAAAACCTTCACCCTCACTCCAGAACAGTATATACTTAAAGTTGAAGAAAGGTGTTCTACTGTCTGCCTTAGCGGATTTGTTGGCTTGGATGTGCCTTCTCCACAAGGTCCACTATGGGTTCTTGGAGCTATGTTTTTGGGTGCATACCACACGGTGTTTGACTTTGGTAATCTCAGGGTAGGATTTGCCAGAGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

504

Amino Acids

55.96

Weight (kDa)

6.08

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	79 - 502	8.3e-103	Eukaryotic aspartyl protease
TAXi_N	PF14543	81 - 238	1.1e-07	Xylanase inhibitor N-terminal
SapB_2	PF03489	314 - 346	7.7e-10	Saposin-like type B, region 2
SapB_1	PF05184	376 - 413	2.7e-07	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	312
AciI	CCGC	2 cut(s)	543, 1386
AclI	AACGTT	1 cut(s)	1275
AclWI	GGATC	3 cut(s)	155, 668, 1057
AcsI	RAATTY	2 cut(s)	417, 500
AcuI	CTGAAG	1 cut(s)	436
AdeI	CACNNNGTG	1 cut(s)	1468
AfaI	GTAC	4 cut(s)	388, 1002, 1014, 1135
AfiI	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1105
AgsI	TTSAA	5 cut(s)	217, 816, 1166, 1172, 1358
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 690, 722
AleI	CACNNNNGTG	2 cut(s)	605, 607
AluBI	AGCT	6 cut(s)	56, 200, 936, 1234, 1442, 1508
AluI	AGCT	6 cut(s)	56, 200, 936, 1234, 1442, 1508
Alw26I	GTCTC	1 cut(s)	1070
AlwI	GGATC	3 cut(s)	155, 668, 1057
AoxI	GGCC	1 cut(s)	1004
ApeKI	GCWGC	5 cut(s)	65, 140, 842, 1280, 1508
ApoI	RAATTY	2 cut(s)	417, 500
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	3 cut(s)	316, 878, 1421
AsuC2I	CCSGG	1 cut(s)	1099
AsuHPI	GGTGA	6 cut(s)	142, 605, 675, 707, 749, 1315
AvaII	GGWCC	3 cut(s)	316, 878, 1421
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
BccI	CCATC	3 cut(s)	77, 548, 1040
BceAI	ACGGC	1 cut(s)	1019
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciVI	GTATCC	1 cut(s)	764
BclI	TGATCA	2 cut(s)	3, 739
BcnI	CCSGG	1 cut(s)	1099
BcoDI	GTCTC	1 cut(s)	1070
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	764
BisI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
BlsI	GCNGC	5 cut(s)	67, 142, 844, 1282, 1510
Bme1390I	CCNGG	1 cut(s)	1099
Bme18I	GGWCC	3 cut(s)	316, 878, 1421
BmgT120I	GGNCC	3 cut(s)	316, 878, 1421
BmiI	GGNNCC	4 cut(s)	317, 318, 436, 1096
BmrFI	CCNGG	1 cut(s)	1099
BmsI	GCATC	5 cut(s)	121, 320, 342, 502, 1118
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	1317
Bpu10I	CCTNAGC	1 cut(s)	1382
BpuMI	CCSGG	1 cut(s)	1099
BsaXI	ACNNNNNCTCC	2 cut(s)	1315, 1345
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1105
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	4 cut(s)	301, 605, 686, 779
BseGI	GGATG	6 cut(s)	112, 193, 333, 863, 1109, 1408
BseLI	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1105
BseMII	CTCAG	4 cut(s)	83, 870, 911, 1501
BseNI	ACTGG	4 cut(s)	301, 605, 686, 779
BseXI	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
BshFI	GGCC	1 cut(s)	1006
BsiSI	CCGG	3 cut(s)	444, 876, 1099
BslFI	GGGAC	4 cut(s)	274, 302, 737, 874
BslI	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1105
BsmAI	GTCTC	1 cut(s)	1070
BsmFI	GGGAC	4 cut(s)	274, 302, 737, 874
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	1006
Bsp143I	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
BspACI	CCGC	2 cut(s)	543, 1386
BspANI	GGCC	1 cut(s)	1006
BspCNI	CTCAG	4 cut(s)	84, 869, 910, 1500
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	317, 318, 436, 1096
BspPI	GGATC	3 cut(s)	155, 668, 1057
BsrFI	RCCGGY	1 cut(s)	875
BsrI	ACTGG	4 cut(s)	301, 605, 686, 779
BssAI	RCCGGY	1 cut(s)	875
BssMI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
Bst4CI	ACNGT	9 cut(s)	549, 889, 952, 1017, 1081, 1268, 1341, 1375, 1468
BstC8I	GCNNGC	2 cut(s)	349, 934
BstDEI	CTNAG	6 cut(s)	92, 856, 897, 1175, 1382, 1487
BstF5I	GGATG	6 cut(s)	112, 193, 333, 863, 1109, 1408
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	8 cut(s)	6, 150, 193, 676, 742, 903, 1052, 1256
BstMAI	GTCTC	1 cut(s)	1070
BstMBI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 834, 917, 1508
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	1 cut(s)	1097
BstV1I	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	1049
BstXI	CCANNNNNNTGG	2 cut(s)	242, 914
BstYI	RGATCY	1 cut(s)	1049
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	1006
BtsCI	GGATG	6 cut(s)	112, 193, 333, 863, 1109, 1408
BtsIMutI	CAGTG	4 cut(s)	460, 612, 693, 1086
Cac8I	GCNNGC	2 cut(s)	349, 934
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	3 cut(s)	316, 878, 1421
Csp6I	GTAC	4 cut(s)	387, 1001, 1013, 1134
CviAII	CATG	6 cut(s)	7, 619, 671, 908, 1211, 1285
CviQI	GTAC	4 cut(s)	387, 1001, 1013, 1134
DdeI	CTNAG	6 cut(s)	92, 856, 897, 1175, 1382, 1487
DpnI	GATC	8 cut(s)	5, 149, 192, 675, 741, 902, 1051, 1255
DpnII	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
DraIII	CACNNNGTG	1 cut(s)	1468
Eco32I	GATATC	1 cut(s)	1027
Eco47I	GGWCC	3 cut(s)	316, 878, 1421
Eco57I	CTGAAG	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	1027
EcoT22I	ATGCAT	1 cut(s)	335
FaeI	CATG	6 cut(s)	10, 622, 674, 911, 1214, 1288
FaqI	GGGAC	4 cut(s)	274, 302, 737, 874
FatI	CATG	6 cut(s)	6, 618, 670, 907, 1210, 1284
FbaI	TGATCA	2 cut(s)	3, 739
Fnu4HI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
FokI	GGATG	6 cut(s)	99, 200, 320, 850, 1096, 1415
Fsp4HI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
GsuI	CTGGAG	1 cut(s)	1317
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	1006
HapII	CCGG	3 cut(s)	444, 876, 1099
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	6 cut(s)	10, 622, 674, 911, 1214, 1288
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HindIII	AAGCTT	2 cut(s)	934, 1232
HinfI	GANTC	5 cut(s)	164, 262, 822, 854, 1162
HpaII	CCGG	3 cut(s)	444, 876, 1099
HphI	GGTGA	6 cut(s)	142, 605, 675, 707, 749, 1315
Hpy166II	GTNNAC	3 cut(s)	1063, 1264, 1424
Hpy188I	TCNGA	4 cut(s)	79, 900, 975, 1089
Hpy188III	TCNNGA	8 cut(s)	227, 327, 497, 578, 671, 754, 1303, 1334
Hpy8I	GTNNAC	3 cut(s)	1063, 1264, 1424
HpyAV	CCTTC	5 cut(s)	515, 917, 1096, 1330, 1419
HpyCH4III	ACNGT	9 cut(s)	549, 889, 952, 1017, 1081, 1268, 1341, 1375, 1468
HpyCH4IV	ACGT	2 cut(s)	1136, 1275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 834, 917, 1508
HpyF3I	CTNAG	6 cut(s)	92, 856, 897, 1175, 1382, 1487
HpySE526I	ACGT	2 cut(s)	1136, 1275
Hsp92II	CATG	6 cut(s)	10, 622, 674, 911, 1214, 1288
HspAI	GCGC	1 cut(s)	303
KflI	GGGWCCC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	3, 739
Kzo9I	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
LmnI	GCTCC	2 cut(s)	917, 1439
Lsp1109I	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
LweI	GCATC	5 cut(s)	121, 320, 342, 502, 1118
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	2 cut(s)	1136, 1275
MaeIII	GTNAC	2 cut(s)	87, 511
MalI	GATC	8 cut(s)	5, 149, 192, 675, 741, 902, 1051, 1255
MboI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
MboII	GAAGA	5 cut(s)	229, 315, 658, 1263, 1370
MflI	RGATCY	1 cut(s)	1049
MluCI	AATT	7 cut(s)	236, 249, 307, 399, 417, 480, 500
MlyI	GAGTC	2 cut(s)	256, 848
MmeI	TCCRAC	1 cut(s)	905
MnlI	CCTC	9 cut(s)	87, 451, 502, 686, 704, 717, 778, 1099, 1337
Mph1103I	ATGCAT	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	8 cut(s)	15, 195, 468, 489, 539, 666, 1206, 1350
MslI	CAYNNNNRTG	4 cut(s)	605, 607, 747, 1215
MspI	CCGG	3 cut(s)	444, 876, 1099
MspR9I	CCNGG	1 cut(s)	1099
Mva1269I	GAATGC	1 cut(s)	533
MwoI	GCNNNNNNNGC	4 cut(s)	62, 834, 917, 1508
NciI	CCSGG	1 cut(s)	1099
NdeII	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
NlaIII	CATG	6 cut(s)	10, 622, 674, 911, 1214, 1288
NlaIV	GGNNCC	4 cut(s)	317, 318, 436, 1096
NsiI	ATGCAT	1 cut(s)	335
NspI	RCATGY	1 cut(s)	1214
OliI	CACNNNNGTG	2 cut(s)	605, 607
PagI	TCATGA	1 cut(s)	670
PctI	GAATGC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	164, 822, 1162
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	67, 142, 844, 1282, 1510
PleI	GAGTC	2 cut(s)	256, 848
PpsI	GAGTC	2 cut(s)	256, 848
PpuMI	RGGWCCY	1 cut(s)	316
Psp1406I	AACGTT	1 cut(s)	1275
Psp5II	RGGWCCY	1 cut(s)	316
PspN4I	GGNNCC	4 cut(s)	317, 318, 436, 1096
PspPI	GGNCC	3 cut(s)	316, 878, 1421
PspPPI	RGGWCCY	1 cut(s)	316
PsrI	GAACNNNNNNTAC	2 cut(s)	1329, 1361
PsuI	RGATCY	1 cut(s)	1049
RsaI	GTAC	4 cut(s)	388, 1002, 1014, 1135
RsaNI	GTAC	4 cut(s)	387, 1001, 1013, 1134
RseI	CAYNNNNRTG	4 cut(s)	605, 607, 747, 1215
SaqAI	TTAA	8 cut(s)	15, 195, 468, 489, 539, 666, 1206, 1350
SatI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
Sau3AI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
Sau96I	GGNCC	3 cut(s)	316, 878, 1421
SchI	GAGTC	2 cut(s)	256, 848
ScrFI	CCNGG	1 cut(s)	1099
SfaNI	GCATC	5 cut(s)	121, 320, 342, 502, 1118
SinI	GGWCC	3 cut(s)	316, 878, 1421
SmiMI	CAYNNNNRTG	4 cut(s)	605, 607, 747, 1215
Sse9I	AATT	7 cut(s)	236, 249, 307, 399, 417, 480, 500
SsiI	CCGC	2 cut(s)	543, 1386
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	1097
TaaI	ACNGT	9 cut(s)	549, 889, 952, 1017, 1081, 1268, 1341, 1375, 1468
TaiI	ACGT	2 cut(s)	1139, 1278
TaqI	TCGA	1 cut(s)	326
TasI	AATT	7 cut(s)	236, 249, 307, 399, 417, 480, 500
TatI	WGTACW	1 cut(s)	1012
TfiI	GAWTC	3 cut(s)	164, 822, 1162
Tru1I	TTAA	8 cut(s)	15, 195, 468, 489, 539, 666, 1206, 1350
Tru9I	TTAA	8 cut(s)	15, 195, 468, 489, 539, 666, 1206, 1350
TscAI	CASTG	4 cut(s)	460, 612, 693, 1086
TseI	GCWGC	5 cut(s)	65, 140, 842, 1280, 1508
TspDTI	ATGAA	3 cut(s)	347, 1134, 1287
TspGWI	ACGGA	1 cut(s)	1102
TspRI	CASTG	4 cut(s)	460, 612, 693, 1086
Van91I	CCANNNNNTGG	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	316, 878, 1421
XapI	RAATTY	2 cut(s)	417, 500
XceI	RCATGY	1 cut(s)	1214
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.