Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Forward (+)

50265289 .. 50269490

Gene Structure 4202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG280600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGCGTTTAAGTGGGTTCTAGTTGCAATATGGATATGGGTTTGGTCAGCTTACTTGGCTGCTACACAATCCGATGATGGGTTACTGAGGATTAGTCTAAAGAAGCATCCTTTAGACTTAAGTAGGATAAATGCTGCAAGGATCACCAATAGAGTAGATTCTCAACAGAGAGATAATGGGGATGATCTTAAAGCCAACATTGTATATTTGAAGAACTATCTTGACACCCAATTTTATGGAGAAATTGGTATTGGGACTCCCCCACAAACCTTTGCTGTTGTCTTTGATACTGGAAGCGCCAATTTTTGGGTCCCATCTTCGAGATGCATCCTTACTATTGCTTGCTATTTTCATTCTAAATACAGGGCAACTATGTCAAGTACCTATACCAAAATTGGAATACCCTGCAAAATTCCTTATGGCTCTGGTTCCATTTCCGGCTACTTCAGTGAGGATAATGTTAAAGTTGGGGAAATTATCGTTAAGCATCAAGAATTTGTTGAGGTTACAAGGGAAGGAGTTGTTGCATTCTTAACCGCACGGTTTGATGGGATTTTTGGACTTGGATTTCAGGATATTTCTGTTGGTGAAGCCACACCAGTGTGGTATAACATGGTGCAACAAGGTCGTATGAGCCAGAAGATTTTCTCTATTTGGCTCAATCATGATCCAAAATCACCAGTGGGAGGTGAAATCGTCTTTGGAGGATATGATTGGAGGCACTTTACGGGTGATCACACTTATGTCCCGATTTCACACAATGGATACTGGCAGATTGAGGTGGGAGATATTATTGTTGCAGACTTTTCAACAGGATTCTGCAAGGGTGGCTGTGCTGCCATTTTGGACTCAGGGACATCCTTACTTGCCGGTCCAACTACTGTTGTGGCTCAGATCAACCATGCCATCGGAGCAGAAGGATTTGCGAGCTTGGAATGTAAAACTGTCGTTTCCACTTATGGAAATCTGATATGGGATTATTTAGTATCTGGGGTACGGCCTGATGTACTGTGTGTGGATATCAGCCTATGTTCGTATGATGGATCTCGTCTTGTAAACAATCGTATTGAGACAGTGGTTCGGAATGGAACTCAGAAGGAGGCATCCGTTGATGAAACTCCTTTATGTACTTTGTGTGAGATGATTGCCTATTGGATTCAACTTCAACTTAGAAAACAAGTATCAAGGGAACAAGTATTTAAGCATGTGAATGAGTTGTGTGAGAAGCTTCCAAATCCTGTGCGAAGATCATTTGTCAACTGTGATAACATTGCAGCCATGCCAGATGTTTCATTCGTGATTGCAAACAAAACCTTCACCCTCACTCCAGAACAGTATATACTTAAAGTTGAAGAAAGGTGTTCTACTGTCTGCCTTAGCGGATTTGTTGGCTTGGATGTGCCTTCTCCACAAGGTCCACTATGGGTTCTTGGAGCTATGTTTTTGGGTGCATACCACACGGTGTTTGACTTTGGTAATCTCAGGGTAGGATTTGCCAGAGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

502

Amino Acids

55.68

Weight (kDa)

5.96

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	77 - 500	1.1e-102	Eukaryotic aspartyl protease
TAXi_N	PF14543	79 - 236	9.3e-08	Xylanase inhibitor N-terminal
SapB_2	PF03489	312 - 344	7.6e-10	Saposin-like type B, region 2
SapB_1	PF05184	374 - 411	2.7e-07	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	306
AciI	CCGC	2 cut(s)	537, 1380
AclWI	GGATC	3 cut(s)	149, 662, 1051
AcsI	RAATTY	2 cut(s)	411, 494
AcuI	CTGAAG	1 cut(s)	430
AdeI	CACNNNGTG	1 cut(s)	1462
AfaI	GTAC	4 cut(s)	382, 996, 1008, 1129
AfiI	CCNNNNNNNGG	3 cut(s)	78, 306, 686
AflII	CTTAAG	1 cut(s)	118
AgsI	TTSAA	5 cut(s)	211, 810, 1160, 1166, 1352
AjuI	GAANNNNNNNTTGG	4 cut(s)	234, 266, 684, 716
AleI	CACNNNNGTG	2 cut(s)	599, 601
AluBI	AGCT	5 cut(s)	50, 930, 1228, 1436, 1502
AluI	AGCT	5 cut(s)	50, 930, 1228, 1436, 1502
Alw26I	GTCTC	1 cut(s)	1064
AlwI	GGATC	3 cut(s)	149, 662, 1051
AoxI	GGCC	1 cut(s)	998
ApeKI	GCWGC	5 cut(s)	59, 134, 836, 1274, 1502
ApoI	RAATTY	2 cut(s)	411, 494
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	310, 872, 1415
AsuHPI	GGTGA	6 cut(s)	136, 599, 669, 701, 743, 1309
AvaII	GGWCC	3 cut(s)	310, 872, 1415
BbvI	GCAGC	5 cut(s)	46, 121, 823, 1286, 1489
BccI	CCATC	5 cut(s)	71, 322, 542, 914, 1034
BceAI	ACGGC	1 cut(s)	1013
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	1064
BfaI	CTAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	5 cut(s)	60, 135, 837, 1275, 1503
BlsI	GCNGC	5 cut(s)	61, 136, 838, 1276, 1504
Bme18I	GGWCC	3 cut(s)	310, 872, 1415
BmgT120I	GGNCC	3 cut(s)	310, 872, 1415
BmiI	GGNNCC	3 cut(s)	311, 312, 430
BmsI	GCATC	5 cut(s)	115, 314, 336, 496, 1112
BpmI	CTGGAG	1 cut(s)	1311
Bpu10I	CCTNAGC	1 cut(s)	1376
BsaXI	ACNNNNNCTCC	2 cut(s)	1309, 1339
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 306, 686
Bse118I	RCCGGY	1 cut(s)	869
Bse1I	ACTGG	4 cut(s)	295, 599, 680, 773
Bse3DI	GCAATG	1 cut(s)	1269
BseGI	GGATG	6 cut(s)	106, 187, 327, 857, 1103, 1402
BseLI	CCNNNNNNNGG	3 cut(s)	78, 306, 686
BseMI	GCAATG	1 cut(s)	1269
BseMII	CTCAG	5 cut(s)	77, 864, 905, 1106, 1495
BseNI	ACTGG	4 cut(s)	295, 599, 680, 773
BseXI	GCAGC	5 cut(s)	46, 121, 823, 1286, 1489
BshFI	GGCC	1 cut(s)	1000
BsiSI	CCGG	2 cut(s)	438, 870
BslFI	GGGAC	4 cut(s)	268, 296, 731, 868
BslI	CCNNNNNNNGG	3 cut(s)	78, 306, 686
BsmAI	GTCTC	1 cut(s)	1064
BsmFI	GGGAC	4 cut(s)	268, 296, 731, 868
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	1000
Bsp143I	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
BspACI	CCGC	2 cut(s)	537, 1380
BspANI	GGCC	1 cut(s)	1000
BspCNI	CTCAG	5 cut(s)	78, 863, 904, 1105, 1494
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	311, 312, 430
BspPI	GGATC	3 cut(s)	149, 662, 1051
BspTI	CTTAAG	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	1269
BsrFI	RCCGGY	1 cut(s)	869
BsrI	ACTGG	4 cut(s)	295, 599, 680, 773
BssAI	RCCGGY	1 cut(s)	869
BssMI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
Bst4CI	ACNGT	9 cut(s)	543, 883, 946, 1011, 1075, 1262, 1335, 1369, 1462
BstAFI	CTTAAG	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	343, 928
BstDEI	CTNAG	7 cut(s)	86, 850, 891, 1092, 1169, 1376, 1481
BstF5I	GGATG	6 cut(s)	106, 187, 327, 857, 1103, 1402
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	7 cut(s)	144, 187, 670, 736, 897, 1046, 1250
BstMAI	GTCTC	1 cut(s)	1064
BstMBI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 828, 911, 1502
BstNSI	RCATGY	1 cut(s)	1208
BstV1I	GCAGC	5 cut(s)	46, 121, 823, 1286, 1489
BstX2I	RGATCY	1 cut(s)	1043
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	1043
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	1000
BtsCI	GGATG	6 cut(s)	106, 187, 327, 857, 1103, 1402
BtsIMutI	CAGTG	4 cut(s)	454, 606, 687, 1080
Cac8I	GCNNGC	2 cut(s)	343, 928
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	3 cut(s)	310, 872, 1415
Csp6I	GTAC	4 cut(s)	381, 995, 1007, 1128
CviAII	CATG	5 cut(s)	613, 665, 902, 1205, 1279
CviQI	GTAC	4 cut(s)	381, 995, 1007, 1128
DdeI	CTNAG	7 cut(s)	86, 850, 891, 1092, 1169, 1376, 1481
DpnI	GATC	7 cut(s)	143, 186, 669, 735, 896, 1045, 1249
DpnII	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
DraIII	CACNNNGTG	1 cut(s)	1462
Eco32I	GATATC	1 cut(s)	1021
Eco47I	GGWCC	3 cut(s)	310, 872, 1415
Eco57I	CTGAAG	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	1021
EcoT22I	ATGCAT	1 cut(s)	329
FaeI	CATG	5 cut(s)	616, 668, 905, 1208, 1282
FaqI	GGGAC	4 cut(s)	268, 296, 731, 868
FatI	CATG	5 cut(s)	612, 664, 901, 1204, 1278
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	5 cut(s)	60, 135, 837, 1275, 1503
FokI	GGATG	6 cut(s)	93, 194, 314, 844, 1090, 1409
Fsp4HI	GCNGC	5 cut(s)	60, 135, 837, 1275, 1503
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	60, 135, 837, 1275, 1503
GsuI	CTGGAG	1 cut(s)	1311
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	1000
HapII	CCGG	2 cut(s)	438, 870
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	5 cut(s)	616, 668, 905, 1208, 1282
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	1258
HindII	GTYRAC	1 cut(s)	1258
HindIII	AAGCTT	1 cut(s)	1226
HinfI	GANTC	5 cut(s)	158, 256, 816, 848, 1156
HpaII	CCGG	2 cut(s)	438, 870
HphI	GGTGA	6 cut(s)	136, 599, 669, 701, 743, 1309
Hpy166II	GTNNAC	3 cut(s)	1057, 1258, 1418
Hpy188I	TCNGA	6 cut(s)	73, 894, 911, 969, 1083, 1095
Hpy188III	TCNNGA	8 cut(s)	221, 321, 491, 572, 665, 748, 1297, 1328
Hpy8I	GTNNAC	3 cut(s)	1057, 1258, 1418
HpyAV	CCTTC	5 cut(s)	509, 911, 1090, 1324, 1413
HpyCH4III	ACNGT	9 cut(s)	543, 883, 946, 1011, 1075, 1262, 1335, 1369, 1462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 828, 911, 1502
HpyF3I	CTNAG	7 cut(s)	86, 850, 891, 1092, 1169, 1376, 1481
Hsp92II	CATG	5 cut(s)	616, 668, 905, 1208, 1282
HspAI	GCGC	1 cut(s)	297
KflI	GGGWCCC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
LmnI	GCTCC	2 cut(s)	911, 1433
Lsp1109I	GCAGC	5 cut(s)	46, 121, 823, 1286, 1489
LweI	GCATC	5 cut(s)	115, 314, 336, 496, 1112
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	81, 505
MalI	GATC	7 cut(s)	143, 186, 669, 735, 896, 1045, 1249
MboI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
MboII	GAAGA	5 cut(s)	223, 309, 652, 1257, 1364
MflI	RGATCY	1 cut(s)	1043
MluCI	AATT	7 cut(s)	230, 243, 301, 393, 411, 474, 494
MlyI	GAGTC	2 cut(s)	250, 842
MmeI	TCCRAC	1 cut(s)	899
MnlI	CCTC	9 cut(s)	81, 445, 496, 680, 698, 711, 772, 1093, 1331
Mph1103I	ATGCAT	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	644
MseI	TTAA	8 cut(s)	9, 119, 189, 462, 483, 533, 1200, 1344
MslI	CAYNNNNRTG	4 cut(s)	599, 601, 741, 1209
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	2 cut(s)	438, 870
Mva1269I	GAATGC	1 cut(s)	527
MwoI	GCNNNNNNNGC	4 cut(s)	56, 828, 911, 1502
NdeII	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
NlaIII	CATG	5 cut(s)	616, 668, 905, 1208, 1282
NlaIV	GGNNCC	3 cut(s)	311, 312, 430
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	1 cut(s)	1208
OliI	CACNNNNGTG	2 cut(s)	599, 601
PagI	TCATGA	1 cut(s)	664
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	158, 816, 1156
PflMI	CCANNNNNTGG	1 cut(s)	306
PkrI	GCNGC	5 cut(s)	61, 136, 838, 1276, 1504
PleI	GAGTC	2 cut(s)	250, 842
PpsI	GAGTC	2 cut(s)	250, 842
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	311, 312, 430
PspPI	GGNCC	3 cut(s)	310, 872, 1415
PspPPI	RGGWCCY	1 cut(s)	310
PsrI	GAACNNNNNNTAC	2 cut(s)	1323, 1355
PsuI	RGATCY	1 cut(s)	1043
RsaI	GTAC	4 cut(s)	382, 996, 1008, 1129
RsaNI	GTAC	4 cut(s)	381, 995, 1007, 1128
RseI	CAYNNNNRTG	4 cut(s)	599, 601, 741, 1209
SaqAI	TTAA	8 cut(s)	9, 119, 189, 462, 483, 533, 1200, 1344
SatI	GCNGC	5 cut(s)	60, 135, 837, 1275, 1503
Sau3AI	GATC	7 cut(s)	141, 184, 667, 733, 894, 1043, 1247
Sau96I	GGNCC	3 cut(s)	310, 872, 1415
SchI	GAGTC	2 cut(s)	250, 842
SfaNI	GCATC	5 cut(s)	115, 314, 336, 496, 1112
SinI	GGWCC	3 cut(s)	310, 872, 1415
SmiMI	CAYNNNNRTG	4 cut(s)	599, 601, 741, 1209
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	7 cut(s)	230, 243, 301, 393, 411, 474, 494
SsiI	CCGC	2 cut(s)	537, 1380
SspMI	CTAG	1 cut(s)	20
TaaI	ACNGT	9 cut(s)	543, 883, 946, 1011, 1075, 1262, 1335, 1369, 1462
TaqI	TCGA	1 cut(s)	320
TasI	AATT	7 cut(s)	230, 243, 301, 393, 411, 474, 494
TatI	WGTACW	2 cut(s)	1006, 1127
TfiI	GAWTC	3 cut(s)	158, 816, 1156
Tru1I	TTAA	8 cut(s)	9, 119, 189, 462, 483, 533, 1200, 1344
Tru9I	TTAA	8 cut(s)	9, 119, 189, 462, 483, 533, 1200, 1344
TscAI	CASTG	4 cut(s)	454, 606, 687, 1080
TseI	GCWGC	5 cut(s)	59, 134, 836, 1274, 1502
TspDTI	ATGAA	3 cut(s)	341, 1128, 1281
TspGWI	ACGGA	1 cut(s)	1096
TspRI	CASTG	4 cut(s)	454, 606, 687, 1080
Van91I	CCANNNNNTGG	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	118
VpaK11BI	GGWCC	3 cut(s)	310, 872, 1415
XapI	RAATTY	2 cut(s)	411, 494
XceI	RCATGY	1 cut(s)	1208
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.