Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

8311104 .. 8312825

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12020.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATTCAACATCGAAGTTGGGAGGTGAGATCGATCTTTGGTGGATTTGATTGGAGGCACTTTATTGGTGATCACACCTATGTCCCAATTTCACAAAAGGGTTACTGGCAGATTGAGGTTGGAGATGTTATCGTTGCAGACAATTCTACAGGACTGTGCTGGGGCGGTTGTGGTGCCATTATAGACTCAGGGACATCCTTCCTCGCTGGTCCAACTACTATCGTGGCTCAGATCAACCATGCCATTGGAGCAGACGGGCTTGCGAGCTTGGAATGTAAAAATGTCATTGCCACTTACGGAAATTTGATATGGGAATATTTAGTATCTGGGGTACGGGCTGATGTAGTGTGTGTGGACATGGGTCTATGTTTATACGACGGTTCTCAGAATATAAACAATAACATTGAGTCAGTGATTGAGAGCAAAACCGGGAGGGAGTCATCAGTCGATGAAACTCCTTTATGTACCTTGTGTGAAATGGTAGTCTACTGGGTTCAACTACAGCTTAAAAAACAAATAGCAAAGGAAAAAATATTTAGCTATGTGAATGAGTTGTGCGAGAAGCTTCCAAATCCGGTAAAAAAGTCGTTTGTCAACTGTGATAACATTGCGTTCATGCCAGACATTTCATTCACAATTGGAAACAAATCCTTCACCCTCTCTCCAGAACAGTACATACTTAAAGTTGAAGAAAAATGCTCCACTGTCTGTCTTAGTGGGTTTACTGCTTTGGATGTGCCTCCTCCACAAGGTCCTCTATGGGTTCTTGGAGCTCTGTTCTTGGGAGCATACCACACGGTGTTTGACTTCGGTAATCTCAGGGTAGGATTCGCAAAAGCTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

282

Amino Acids

30.91

Weight (kDa)

5.03

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	301
AdeI	CACNNNGTG	1 cut(s)	799
AfaI	GTAC	3 cut(s)	333, 466, 674
AfiI	CCNNNNNNNGG	1 cut(s)	749
AgsI	TTSAA	3 cut(s)	8, 497, 689
AluBI	AGCT	6 cut(s)	267, 505, 540, 565, 773, 839
AluI	AGCT	6 cut(s)	267, 505, 540, 565, 773, 839
Alw21I	GWGCWC	1 cut(s)	775
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	209, 752
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	37, 80, 646
AvaII	GGWCC	2 cut(s)	209, 752
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	775
Bbv12I	GWGCWC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	430
BfmI	CTRYAG	2 cut(s)	147, 500
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	209, 752
BmgT120I	GGNCC	2 cut(s)	209, 752
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	430
BmrI	ACTGGG	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	499
BoxI	GACNNNNGTC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	648
BpuMI	CCSGG	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	843
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	110, 494
Bse3DI	GCAATG	2 cut(s)	285, 606
BseCI	ATCGAT	1 cut(s)	32
BseGI	GGATG	2 cut(s)	194, 739
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMI	GCAATG	2 cut(s)	285, 606
BseMII	CTCAG	4 cut(s)	201, 242, 398, 832
BseNI	ACTGG	2 cut(s)	110, 494
BseRI	GAGGAG	1 cut(s)	732
BseYI	CCCAGC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	2 cut(s)	429, 575
BslFI	GGGAC	2 cut(s)	68, 205
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	68, 205
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp143I	GATC	4 cut(s)	29, 33, 70, 231
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	4 cut(s)	200, 241, 397, 831
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	285, 606
BsrI	ACTGG	2 cut(s)	110, 494
BssMI	GATC	4 cut(s)	29, 33, 70, 231
Bst4CI	ACNGT	6 cut(s)	156, 380, 599, 672, 706, 799
BstBAI	YACGTR	1 cut(s)	843
BstC8I	GCNNGC	2 cut(s)	261, 265
BstDEI	CTNAG	5 cut(s)	187, 228, 384, 713, 818
BstENI	CCTNNNNNAGG	1 cut(s)	747
BstF5I	GGATG	2 cut(s)	194, 739
BstKTI	GATC	4 cut(s)	32, 36, 73, 234
BstMBI	GATC	4 cut(s)	29, 33, 70, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstPAI	GACNNNNGTC	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	2 cut(s)	147, 500
BstSNI	TACGTA	1 cut(s)	843
BstXI	CCANNNNNNTGG	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	194, 739
BtsIMutI	CAGTG	2 cut(s)	417, 702
Cac8I	GCNNGC	2 cut(s)	261, 265
Cfr13I	GGNCC	2 cut(s)	209, 752
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	332, 465, 673
CviAII	CATG	3 cut(s)	239, 358, 616
CviJI	RGCY	9 cut(s)	227, 259, 267, 338, 505, 540, 565, 773, 839
CviKI_1	RGCY	9 cut(s)	227, 259, 267, 338, 505, 540, 565, 773, 839
CviQI	GTAC	3 cut(s)	332, 465, 673
DdeI	CTNAG	5 cut(s)	187, 228, 384, 713, 818
DpnI	GATC	4 cut(s)	31, 35, 72, 233
DpnII	GATC	4 cut(s)	29, 33, 70, 231
DraIII	CACNNNGTG	1 cut(s)	799
Ecl136II	GAGCTC	1 cut(s)	773
Eco105I	TACGTA	1 cut(s)	843
Eco24I	GRGCYC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	209, 752
Eco53kI	GAGCTC	1 cut(s)	773
EcoICRI	GAGCTC	1 cut(s)	773
EcoNI	CCTNNNNNAGG	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	752
EcoT38I	GRGCYC	1 cut(s)	775
FaeI	CATG	3 cut(s)	242, 361, 619
FaqI	GGGAC	2 cut(s)	68, 205
FatI	CATG	3 cut(s)	238, 357, 615
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	486
FokI	GGATG	2 cut(s)	181, 746
FriOI	GRGCYC	1 cut(s)	775
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	648
HapII	CCGG	2 cut(s)	429, 575
Hin1II	CATG	3 cut(s)	242, 361, 619
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	5 cut(s)	4, 185, 407, 437, 828
HpaII	CCGG	2 cut(s)	429, 575
HphI	GGTGA	3 cut(s)	37, 80, 646
Hpy166II	GTNNAC	4 cut(s)	355, 487, 595, 723
Hpy188I	TCNGA	2 cut(s)	231, 387
Hpy188III	TCNNGA	1 cut(s)	665
Hpy8I	GTNNAC	4 cut(s)	355, 487, 595, 723
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	208, 661
HpyCH4III	ACNGT	6 cut(s)	156, 380, 599, 672, 706, 799
HpyCH4IV	ACGT	1 cut(s)	842
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	5 cut(s)	187, 228, 384, 713, 818
HpySE526I	ACGT	1 cut(s)	842
Hsp92II	CATG	3 cut(s)	242, 361, 619
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	29, 33, 70, 231
LmnI	GCTCC	4 cut(s)	248, 704, 770, 785
MaeII	ACGT	1 cut(s)	842
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	4 cut(s)	31, 35, 72, 233
MboI	GATC	4 cut(s)	29, 33, 70, 231
MboII	GAAGA	1 cut(s)	701
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	4 cut(s)	87, 142, 301, 636
MlyI	GAGTC	3 cut(s)	179, 416, 446
MmeI	TCCRAC	2 cut(s)	100, 236
MnlI	CCTC	9 cut(s)	16, 48, 109, 212, 426, 668, 750, 753, 765
MseI	TTAA	2 cut(s)	507, 681
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	2 cut(s)	429, 575
MspR9I	CCNGG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	4 cut(s)	29, 33, 70, 231
NlaIII	CATG	3 cut(s)	242, 361, 619
NlaIV	GGNNCC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	4, 828
PleI	GAGTC	3 cut(s)	179, 415, 445
PpsI	GAGTC	3 cut(s)	179, 415, 445
Ppu21I	YACGTR	1 cut(s)	843
PpuMI	RGGWCCY	1 cut(s)	752
PshAI	GACNNNNGTC	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	775
Psp5II	RGGWCCY	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	2 cut(s)	209, 752
PspPPI	RGGWCCY	1 cut(s)	752
PsrI	GAACNNNNNNTAC	2 cut(s)	660, 692
RsaI	GTAC	3 cut(s)	333, 466, 674
RsaNI	GTAC	3 cut(s)	332, 465, 673
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	775
SaqAI	TTAA	2 cut(s)	507, 681
Sau3AI	GATC	4 cut(s)	29, 33, 70, 231
Sau96I	GGNCC	2 cut(s)	209, 752
SchI	GAGTC	3 cut(s)	179, 416, 446
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	775
SfcI	CTRYAG	2 cut(s)	147, 500
SinI	GGWCC	2 cut(s)	209, 752
SmiMI	CAYNNNNRTG	1 cut(s)	78
SnaBI	TACGTA	1 cut(s)	843
Sse9I	AATT	4 cut(s)	87, 142, 301, 636
SsiI	CCGC	1 cut(s)	165
SspI	AATATT	2 cut(s)	317, 534
SstI	GAGCTC	1 cut(s)	775
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	6 cut(s)	156, 380, 599, 672, 706, 799
TaiI	ACGT	1 cut(s)	845
TaqI	TCGA	3 cut(s)	13, 32, 447
TasI	AATT	4 cut(s)	87, 142, 301, 636
TatI	WGTACW	1 cut(s)	672
TfiI	GAWTC	2 cut(s)	4, 828
Tru1I	TTAA	2 cut(s)	507, 681
Tru9I	TTAA	2 cut(s)	507, 681
TscAI	CASTG	2 cut(s)	417, 709
TspDTI	ATGAA	3 cut(s)	465, 604, 618
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	417, 709
VpaK11BI	GGWCC	2 cut(s)	209, 752
XagI	CCTNNNNNAGG	1 cut(s)	747
XapI	RAATTY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.