Prupe.6G304600_v2.0.a1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
27543994 .. 27548846
4853 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G304600.2

Sequence Viewer

Length: 1521 bp
ATGTGGCACAAATACCTCTTGGTGGCCGTCTACTTATGGGCCTTAACATGTTCACTTGTTCCTGCTTATGGCCTAGTGAGAATCGGTCTGAAGAAGCGACCCTTGGATCTTCAAACCATCAAAGCTGCAAGAGCAGAAAGGTTGGCAAATTACAGAGGGAGTCTAAAGGGCATGAATCAGAATCATTACTTGGGTAGTTCAGATGAAGATATAGTACCTCTCAATAATTACATGGATGCTCAATATTATGGGGAGATTGGAATTGGCTCACCTCCTCAGAACTTCACTGTCATATTTGATACTGGCAGTTCCAATCTTTGGGTTCCATCATCAAAATGCTATTTTTCTATTGCATGCTATTTCCATACGAAGTACAAGTCAAGCAAGTCCAGCACATACACGGCAATTGGAACGTCGGCCAAAATAACATATGGAAGTGGATCAATTTCTGGTTTCTTCAGTCAAGACAATGTTGAAGTTGGAGACCTTGTTGTCAAAAATCAAGATTTCATTGAGGCAACAAAAGAGGGCAGCCTCACATTCGTTTTGGCGAAGTTTGATGGACTTCTTGGCCTTGGGTTTCAGGAAATCTCTGTTGGGAATGCCACACCAGTGTGGCAAACCATGGCGGAACAAGGTCTTTTAAGTGATGATGTCTTCTCATTCTGGCTTAACCGAGACACAACTGCAGAAGTAGGAGGTGAACTTGTTTTCGGTGGTGTTGACTCAAAGCATTATAAAGGGAAGCATACCTATGTTCCAGTTACTAGAAAGGGTTATTGGCAGTTTGAAATGGGCGATATTGTAATCGGGAACTTGTCAACAGGTGTTTGTGAGGGGGGTTGTGCTGCTGTTGTGGATTCAGGAACGTCCTTACTCACTGGTCCAACGACTATTGTGACTGAAATTAACCATGCTATTGGAGCTGAAGGAGTAGTAAGTGCAGAGTGCAAGCAAGTTGTGTCTCAATATGGAGACTTGATTTGGGATCTTCTAATATCAGGGGTACAACCTGACCAAGTATGTAAGCAGCTTGGTTTGTGCGTTTTCAATGGGGCTCAGTATGTGAGCACTGGGATTGAAACAGTGGTTGAGAAGGAGAGCAGGGAGGGCTCATCTGCTGGTGACAGTGCTTTGTGCACAGCTTGTGAGATGGCTGTTGTTTGGGCCCAGAATCAGCTCAAACAAAAAGGAGCAAAAGACAGAGTCCTAAGCTACATCAACGAGCTCTGTGAGAGCCTTCCAAGTCCACTGGGAGAATCCATAATCGACTGCAATAGCATTTCGAGCATGCCAAACGTGACCTTCACCATTGGAGATAAACCTTTCATCCTCACTCCGGAACAATATATTCTGAAAACTGGAGAAGGCATTGCTGCCATCTGTATCAGCGGGTTTGGGGCTCTTGATCTTGCTCCTCCAACTGGGCCTCTGTGGATTCTTGGAGACGTATTCATGGGGCCATACCACACCGTGTTCGACTTTGGTGACCTTCAAATCGGATTCGCAGAAGCTGCTTAA

Protein Analysis

507

Amino Acids

54.58

Weight (kDa)

4.83

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AasI GACNNNNNNGTC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 318
AccI GTMKAC 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 1339
AciI CCGC 2 cut(s) 629, 1392
AclWI GGATC 3 cut(s) 114, 448, 996
AcoI YGGCCR 2 cut(s) 24, 417
AcuI CTGAAG 3 cut(s) 110, 442, 948
AdeI CACNNNGTG 1 cut(s) 1474
AfaI GTAC 3 cut(s) 216, 374, 1008
AfiI CCNNNNNNNGG 5 cut(s) 22, 68, 318, 1339, 1424
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 6 cut(s) 113, 476, 791, 1051, 1082, 1496
AjuI GAANNNNNNNTTGG 8 cut(s) 86, 118, 173, 205, 579, 611, 763, 795
AleI CACNNNNGTG 2 cut(s) 611, 613
AluBI AGCT 8 cut(s) 125, 926, 1033, 1145, 1180, 1215, 1228, 1514
AluI AGCT 8 cut(s) 125, 926, 1033, 1145, 1180, 1215, 1228, 1514
Alw21I GWGCWC 3 cut(s) 1073, 1142, 1230
Alw26I GTCTC 5 cut(s) 477, 672, 969, 969, 1440
Alw44I GTGCAC 1 cut(s) 1138
AlwI GGATC 3 cut(s) 114, 448, 996
AlwNI CAGNNNCTG 1 cut(s) 1514
Aor13HI TCCGGA 1 cut(s) 1339
AoxI GGCC 8 cut(s) 24, 39, 70, 417, 571, 1167, 1427, 1460
ApaI GGGCCC 1 cut(s) 1171
ApaLI GTGCAC 1 cut(s) 1138
ApeKI GCWGC 6 cut(s) 125, 531, 848, 1030, 1376, 1514
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AspS9I GGNCC 6 cut(s) 39, 884, 1167, 1168, 1427, 1460
AsuHPI GGTGA 5 cut(s) 261, 713, 1136, 1300, 1499
AvaII GGWCC 1 cut(s) 884
BaeGI GKGCMC 2 cut(s) 1142, 1171
BanII GRGCYC 5 cut(s) 1060, 1115, 1171, 1230, 1405
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 3 cut(s) 1073, 1142, 1230
BbvI GCAGC 6 cut(s) 112, 543, 835, 1042, 1363, 1501
BccI CCATC 5 cut(s) 125, 334, 554, 1147, 1388
BceAI ACGGC 2 cut(s) 11, 417
BcoDI GTCTC 5 cut(s) 477, 672, 969, 969, 1440
BfaI CTAG 2 cut(s) 74, 768
BfmI CTRYAG 1 cut(s) 687
BisI GCNGC 6 cut(s) 126, 532, 849, 1031, 1377, 1515
BlsI GCNGC 6 cut(s) 127, 533, 850, 1032, 1378, 1516
Bme18I GGWCC 1 cut(s) 884
BmgT120I GGNCC 6 cut(s) 39, 884, 1167, 1168, 1427, 1460
BmiI GGNNCC 3 cut(s) 324, 1169, 1461
BmrI ACTGGG 3 cut(s) 1083, 1262, 1434
BmsI GCATC 1 cut(s) 226
BmuI ACTGGG 3 cut(s) 1083, 1262, 1434
BpiI GAAGAC 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 1383
Bpu10I CCTNAGC 1 cut(s) 1211
BsaI GGTCTC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 102, 574, 624
BsaWI WCCGGW 1 cut(s) 1339
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 68, 318, 1339, 1424
Bse1I ACTGG 8 cut(s) 307, 611, 761, 886, 1078, 1257, 1366, 1429
Bse3DI GCAATG 1 cut(s) 1371
BseAI TCCGGA 1 cut(s) 1339
BseDI CCNNGG 3 cut(s) 102, 574, 624
BseGI GGATG 2 cut(s) 241, 1329
BseLI CCNNNNNNNGG 5 cut(s) 22, 68, 318, 1339, 1424
BseMI GCAATG 1 cut(s) 1371
BseMII CTCAG 2 cut(s) 290, 1073
BseNI ACTGG 8 cut(s) 307, 611, 761, 886, 1078, 1257, 1366, 1429
BseRI GAGGAG 2 cut(s) 264, 1407
BseSI GKGCMC 2 cut(s) 1142, 1171
BseXI GCAGC 6 cut(s) 112, 543, 835, 1042, 1363, 1501
BsgI GTGCAG 1 cut(s) 963
BshFI GGCC 8 cut(s) 26, 41, 72, 419, 573, 1169, 1429, 1462
BsiHKAI GWGCWC 3 cut(s) 1073, 1142, 1230
BsiSI CCGG 1 cut(s) 1340
BslI CCNNNNNNNGG 5 cut(s) 22, 68, 318, 1339, 1424
BsmAI GTCTC 5 cut(s) 477, 672, 969, 969, 1440
BsmBI CGTCTC 1 cut(s) 1440
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 8 cut(s) 26, 41, 72, 419, 573, 1169, 1429, 1462
Bso31I GGTCTC 1 cut(s) 477
Bsp120I GGGCCC 1 cut(s) 1167
Bsp1286I GDGCHC 7 cut(s) 1060, 1073, 1115, 1142, 1171, 1230, 1405
Bsp13I TCCGGA 1 cut(s) 1339
Bsp143I GATC 4 cut(s) 106, 440, 988, 1408
Bsp19I CCATGG 1 cut(s) 624
BspACI CCGC 2 cut(s) 629, 1392
BspANI GGCC 8 cut(s) 26, 41, 72, 419, 573, 1169, 1429, 1462
BspCNI CTCAG 2 cut(s) 289, 1072
BspEI TCCGGA 1 cut(s) 1339
BspLI GGNNCC 3 cut(s) 324, 1169, 1461
BspMAI CTGCAG 1 cut(s) 691
BspPI GGATC 3 cut(s) 114, 448, 996
BspTNI GGTCTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 1371
BsrI ACTGG 8 cut(s) 307, 611, 761, 886, 1078, 1257, 1366, 1429
BssECI CCNNGG 3 cut(s) 102, 574, 624
BssMI GATC 4 cut(s) 106, 440, 988, 1408
BssT1I CCWWGG 3 cut(s) 102, 574, 624
Bst4CI ACNGT 4 cut(s) 289, 1087, 1130, 1474
BstAPI GCANNNNNTGC 1 cut(s) 1514
BstC8I GCNNGC 3 cut(s) 355, 953, 1292
BstDEI CTNAG 3 cut(s) 276, 1059, 1211
BstDSI CCRYGG 1 cut(s) 624
BstEII GGTNACC 1 cut(s) 1487
BstF5I GGATG 2 cut(s) 241, 1329
BstKTI GATC 4 cut(s) 109, 443, 991, 1411
BstMAI GTCTC 5 cut(s) 477, 672, 969, 969, 1440
BstMBI GATC 4 cut(s) 106, 440, 988, 1408
BstMWI GCNNNNNNNGC 6 cut(s) 131, 390, 923, 1110, 1287, 1514
BstNSI RCATGY 3 cut(s) 51, 357, 1294
BstPI GGTNACC 1 cut(s) 1487
BstSFI CTRYAG 1 cut(s) 687
BstSLI GKGCMC 2 cut(s) 1142, 1171
BstV1I GCAGC 6 cut(s) 112, 543, 835, 1042, 1363, 1501
BstV2I GAAGAC 1 cut(s) 649
BstX2I RGATCY 2 cut(s) 106, 988
BstXI CCANNNNNNTGG 1 cut(s) 920
BstYI RGATCY 2 cut(s) 106, 988
BsuRI GGCC 8 cut(s) 26, 41, 72, 419, 573, 1169, 1429, 1462
BtgI CCRYGG 1 cut(s) 624
BtsCI GGATG 2 cut(s) 241, 1329
BtsIMutI CAGTG 7 cut(s) 285, 618, 879, 1071, 1092, 1135, 1250
Cac8I GCNNGC 3 cut(s) 355, 953, 1292
CaiI CAGNNNCTG 1 cut(s) 1514
Cfr13I GGNCC 6 cut(s) 39, 884, 1167, 1168, 1427, 1460
Csp6I GTAC 3 cut(s) 215, 373, 1007
CviAII CATG 8 cut(s) 48, 172, 232, 354, 625, 914, 1291, 1456
CviQI GTAC 3 cut(s) 215, 373, 1007
DdeI CTNAG 3 cut(s) 276, 1059, 1211
DpnI GATC 4 cut(s) 108, 442, 990, 1410
DpnII GATC 4 cut(s) 106, 440, 988, 1408
DraIII CACNNNGTG 1 cut(s) 1474
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
EaeI YGGCCR 2 cut(s) 24, 417
EciI GGCGGA 1 cut(s) 644
Ecl136II GAGCTC 1 cut(s) 1228
Eco130I CCWWGG 3 cut(s) 102, 574, 624
Eco24I GRGCYC 5 cut(s) 1060, 1115, 1171, 1230, 1405
Eco31I GGTCTC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 884
Eco53kI GAGCTC 1 cut(s) 1228
Eco57I CTGAAG 3 cut(s) 110, 442, 948
Eco91I GGTNACC 1 cut(s) 1487
EcoICRI GAGCTC 1 cut(s) 1228
EcoO65I GGTNACC 1 cut(s) 1487
EcoT14I CCWWGG 3 cut(s) 102, 574, 624
EcoT38I GRGCYC 5 cut(s) 1060, 1115, 1171, 1230, 1405
ErhI CCWWGG 3 cut(s) 102, 574, 624
Esp3I CGTCTC 1 cut(s) 1440
FaeI CATG 8 cut(s) 51, 175, 235, 357, 628, 917, 1294, 1459
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FatI CATG 8 cut(s) 47, 171, 231, 353, 624, 913, 1290, 1455
FauI CCCGC 1 cut(s) 1385
FauNDI CATATG 1 cut(s) 430
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 126, 532, 849, 1031, 1377, 1515
FokI GGATG 2 cut(s) 248, 1316
FriOI GRGCYC 5 cut(s) 1060, 1115, 1171, 1230, 1405
Fsp4HI GCNGC 6 cut(s) 126, 532, 849, 1031, 1377, 1515
FspBI CTAG 2 cut(s) 74, 768
GluI GCNGC 6 cut(s) 126, 532, 849, 1031, 1377, 1515
GsuI CTGGAG 1 cut(s) 1383
HaeIII GGCC 8 cut(s) 26, 41, 72, 419, 573, 1169, 1429, 1462
HapII CCGG 1 cut(s) 1340
Hin1II CATG 8 cut(s) 51, 175, 235, 357, 628, 917, 1294, 1459
HincII GTYRAC 2 cut(s) 724, 822
HindII GTYRAC 2 cut(s) 724, 822
HpaII CCGG 1 cut(s) 1340
HphI GGTGA 5 cut(s) 261, 713, 1136, 1300, 1499
Hpy166II GTNNAC 7 cut(s) 31, 53, 704, 724, 822, 1140, 1250
Hpy188I TCNGA 6 cut(s) 90, 180, 202, 279, 1356, 1502
Hpy188III TCNNGA 7 cut(s) 464, 503, 584, 811, 864, 1340, 1406
Hpy8I GTNNAC 7 cut(s) 31, 53, 704, 724, 822, 1140, 1250
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 6 cut(s) 923, 1090, 1250, 1315, 1361, 1502
HpyCH4III ACNGT 4 cut(s) 289, 1087, 1130, 1474
HpyCH4IV ACGT 4 cut(s) 413, 869, 1299, 1449
HpyCH4V TGCA 7 cut(s) 128, 353, 689, 944, 951, 1140, 1275
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 390, 923, 1110, 1287, 1514
HpyF3I CTNAG 3 cut(s) 276, 1059, 1211
HpySE526I ACGT 4 cut(s) 413, 869, 1299, 1449
Hsp92II CATG 8 cut(s) 51, 175, 235, 357, 628, 917, 1294, 1459
Kpn2I TCCGGA 1 cut(s) 1339
Kzo9I GATC 4 cut(s) 106, 440, 988, 1408
LmnI GCTCC 3 cut(s) 923, 1193, 1420
Lsp1109I GCAGC 6 cut(s) 112, 543, 835, 1042, 1363, 1501
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 74, 768
MaeII ACGT 4 cut(s) 413, 869, 1299, 1449
MaeIII GTNAC 5 cut(s) 763, 898, 1124, 1300, 1487
MalI GATC 4 cut(s) 108, 442, 990, 1410
MboI GATC 4 cut(s) 106, 440, 988, 1408
MboII GAAGA 6 cut(s) 101, 103, 218, 448, 649, 983
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 2 cut(s) 106, 988
MhlI GDGCHC 7 cut(s) 1060, 1073, 1115, 1142, 1171, 1230, 1405
MluCI AATT 6 cut(s) 148, 226, 261, 405, 444, 906
MlyI GAGTC 3 cut(s) 169, 719, 1215
MmeI TCCRAC 3 cut(s) 460, 911, 1445
MroI TCCGGA 1 cut(s) 1339
MseI TTAA 5 cut(s) 44, 644, 672, 909, 1519
MslI CAYNNNNRTG 4 cut(s) 334, 611, 613, 753
MspA1I CMGCKG 1 cut(s) 1392
MspI CCGG 1 cut(s) 1340
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 607
MwoI GCNNNNNNNGC 6 cut(s) 131, 390, 923, 1110, 1287, 1514
NcoI CCATGG 1 cut(s) 624
NdeI CATATG 1 cut(s) 430
NdeII GATC 4 cut(s) 106, 440, 988, 1408
NlaIII CATG 8 cut(s) 51, 175, 235, 357, 628, 917, 1294, 1459
NlaIV GGNNCC 3 cut(s) 324, 1169, 1461
NmuCI GTSAC 4 cut(s) 898, 1124, 1300, 1487
NspI RCATGY 3 cut(s) 51, 357, 1294
OliI CACNNNNGTG 2 cut(s) 611, 613
PaeI GCATGC 2 cut(s) 357, 1294
PciI ACATGT 1 cut(s) 47
PctI GAATGC 1 cut(s) 607
PfeI GAWTC 8 cut(s) 81, 175, 181, 860, 1174, 1259, 1438, 1503
PflFI GACNNNGTC 1 cut(s) 1205
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 6 cut(s) 127, 533, 850, 1032, 1378, 1516
PleI GAGTC 3 cut(s) 168, 719, 1214
PpsI GAGTC 3 cut(s) 168, 719, 1214
PscI ACATGT 1 cut(s) 47
PsiI TTATAA 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 1230
PspEI GGTNACC 1 cut(s) 1487
PspN4I GGNNCC 3 cut(s) 324, 1169, 1461
PspOMI GGGCCC 1 cut(s) 1167
PspPI GGNCC 6 cut(s) 39, 884, 1167, 1168, 1427, 1460
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 1514
PsuI RGATCY 2 cut(s) 106, 988
PsyI GACNNNGTC 1 cut(s) 1205
RsaI GTAC 3 cut(s) 216, 374, 1008
RsaNI GTAC 3 cut(s) 215, 373, 1007
RseI CAYNNNNRTG 4 cut(s) 334, 611, 613, 753
SacI GAGCTC 1 cut(s) 1230
SaqAI TTAA 5 cut(s) 44, 644, 672, 909, 1519
SatI GCNGC 6 cut(s) 126, 532, 849, 1031, 1377, 1515
Sau3AI GATC 4 cut(s) 106, 440, 988, 1408
Sau96I GGNCC 6 cut(s) 39, 884, 1167, 1168, 1427, 1460
SchI GAGTC 3 cut(s) 169, 719, 1215
SduI GDGCHC 7 cut(s) 1060, 1073, 1115, 1142, 1171, 1230, 1405
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 687
SinI GGWCC 1 cut(s) 884
SmiMI CAYNNNNRTG 4 cut(s) 334, 611, 613, 753
SphI GCATGC 2 cut(s) 357, 1294
Sse9I AATT 6 cut(s) 148, 226, 261, 405, 444, 906
SsiI CCGC 2 cut(s) 629, 1392
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 74, 768
SstI GAGCTC 1 cut(s) 1230
StyI CCWWGG 3 cut(s) 102, 574, 624
TaaI ACNGT 4 cut(s) 289, 1087, 1130, 1474
TaiI ACGT 4 cut(s) 416, 872, 1302, 1452
TaqI TCGA 3 cut(s) 1269, 1286, 1479
TaqII GACCGA 1 cut(s) 74
TasI AATT 6 cut(s) 148, 226, 261, 405, 444, 906
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 8 cut(s) 81, 175, 181, 860, 1174, 1259, 1438, 1503
Tru1I TTAA 5 cut(s) 44, 644, 672, 909, 1519
Tru9I TTAA 5 cut(s) 44, 644, 672, 909, 1519
TscAI CASTG 7 cut(s) 292, 618, 886, 1078, 1092, 1135, 1257
TseFI GTSAC 4 cut(s) 898, 1124, 1300, 1487
TseI GCWGC 6 cut(s) 125, 531, 848, 1030, 1376, 1514
Tsp45I GTSAC 4 cut(s) 898, 1124, 1300, 1487
TspDTI ATGAA 5 cut(s) 188, 219, 499, 1318, 1444
TspRI CASTG 7 cut(s) 292, 618, 886, 1078, 1092, 1135, 1257
Tth111I GACNNNGTC 1 cut(s) 1205
Van91I CCANNNNNTGG 1 cut(s) 318
VneI GTGCAC 1 cut(s) 1138
VpaK11BI GGWCC 1 cut(s) 884
XceI RCATGY 3 cut(s) 51, 357, 1294
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 2 cut(s) 74, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.