Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

59689326 .. 59690987

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAGAGAGATAGAGGTGAATAGAAGAGGAAGAAAAACTAAAAAGCATCTAAAATGGTATAACATGGTGCAACAAGGTCGTATGAGCCAGCCGATTTTCTCTATTTGGCTCAATCATGATCCAAAATCACCAGTGGGAGGTGAAATCGTCTTTGGAGGATATGATTGGAGACACCTTGTGAAAATTCAAACTATTGCAATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

68

Amino Acids

8.11

Weight (kDa)

10.43

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	15 - 59	4.1e-08	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	28, 120, 152
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BcoDI	GTCTC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	115
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	115
CviAII	CATG	2 cut(s)	64, 116
CviJI	RGCY	3 cut(s)	87, 91, 109
CviKI_1	RGCY	3 cut(s)	87, 91, 109
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DraIII	CACNNNGTG	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
FaeI	CATG	2 cut(s)	67, 119
FaiI	YATR	5 cut(s)	60, 65, 83, 117, 162
FatI	CATG	2 cut(s)	63, 115
Hin1II	CATG	2 cut(s)	67, 119
HphI	GGTGA	3 cut(s)	28, 120, 152
Hpy188III	TCNNGA	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	70, 197
Hsp92II	CATG	2 cut(s)	67, 119
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	2 cut(s)	101, 144
LweI	GCATC	1 cut(s)	55
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	36, 42
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	4 cut(s)	7, 20, 131, 149
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	67, 119
PagI	TCATGA	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	4 cut(s)	18, 79, 142, 177
SfaNI	GCATC	1 cut(s)	55
SgeI	CNNG	6 cut(s)	76, 86, 100, 128, 143, 188
Sse9I	AATT	1 cut(s)	183
TasI	AATT	1 cut(s)	183
TscAI	CASTG	1 cut(s)	138
TspRI	CASTG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.