Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

8228565 .. 8232618

Gene Structure 4054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G103000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGAGCATGGCGTTTAAGGGTCTTCTGGTTGCAATTTGTATTTGGGTTTGGTCAGGCTCCTTGGCTGCTGCAATATCCAATGATGGGCTACTGAGAATTGGTCTCAAGAAGCAGCCTGTAGGCCTCAACAGATTGAATGCTGCAAGAATCACCAAGACAGAAGTTTCTCAACCTAGAGGTCTGGGGGATGTAAATATTAACTCCAATAATCTTAAAGCTAATATTGTATATCTGAAAAATTACTTTGATACCCAATATTATGGAGAGATTGCTATTGGTTCTCCCCCACAATACTTGGCTGTTGTCTTTGATACTGGCAGCTCCAATCTTTGGGTCCCATCTTCAAGATGCATCTTTTCTATTGCTTGTTACTTTCATTCAAAATACAGGGCAAGCATATCGAGTACCTACACCAAAATTGGAATACCCTGCAAAATTCCTTATGGCTCTGGTTCCATTTCTGGCTACTTCAGTGCGGACAATGTTAAAATTGGGGATGTGATCATCAAAGATCAAGAATTTGTTGAGGTTACAAGGGAAGGAGTCCTTACATTCTTAGCTGCACGGTTTGATGGGGTCCTTGGACTTGGATTTCAGGATATTTCTGTTGGCGAAGCCACACCAGTGTGGTATAACATGGTGCAACAAGGTCATATGAGCCAGCAAATTTTCTCTATCTGGCTAAATCATGATCCAACATCAAGGGTGGGAGGTGAGATCGTCTTTGGTGGATTTGATTGGAGGCACTTTACGGGTGATCACACCTATGTCCCGATTTCAAAAAAGGGTTACTGGCAGATTGATGTTGGAGATGTTATTGTTGCAGACAATTCCACAGGACTATGCAAGGGTGGCTGTGCTGCCATTGTGGACTCAGGAACATCCTTCCTTGCTGGTCCAACTACTATAGTGGCTCAGATCAACCATGCCATTGGAGCAGACGGATATGCAAACTTGGAATGTAAAAATGTTGTTTCCACTTATGGAAATTTGATATGGGAATATCTAGTATCTGGGGTACGGCCTGATATAGTGTGTGTGGATATCGGTCTATGTTCATATGATGGATCTCGTAATGTGAAAAACTATATTGAGTCAGTGATAGAGAATGAAACTGGGAAGGAGTCATCAGTTGATGAAACTCCTCTATGTACCTTGTGTGAAATGGTTGTCTACTGGATTCAGCTGCAGCTTAAAAAGCAAATAGCAAAGGAAAAAATATTTAGCTATGTGAATGAGTTGTGCGAGAAGCTTCCAAATCCATTGAGAAGGTCATTTGTCAACTGTGATAACATTGCATTCATGCCAGATGTTTCATTTACAATTGGGAACAAATCCTTCACCCTCTCCCCAGAACAGTATATACTTAAAGTTGAAGGAAAATGTTCTATTGTCTGCCTTAGTGGATTTGTTGCTTTGGATGTGCCTCCCCCGCAAGGTCCTCTATGGGTTCTTGGAGCTCTGTTCTTGGGAGCATACCACACAGTGTTTGACTTCGGTAATCTCAGGGTAGGATTTGCAAAAGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

511

Amino Acids

55.85

Weight (kDa)

6.02

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	1173
AciI	CCGC	2 cut(s)	476, 1433
AclWI	GGATC	2 cut(s)	686, 1075
AcsI	RAATTY	4 cut(s)	435, 518, 666, 988
AcuI	CTGAAG	1 cut(s)	454
AdeI	CACNNNGTG	1 cut(s)	1486
AfaI	GTAC	3 cut(s)	406, 1020, 1153
AfiI	CCNNNNNNNGG	3 cut(s)	84, 330, 1436
AgsI	TTSAA	5 cut(s)	136, 345, 381, 780, 1376
AleI	CACNNNNGTG	2 cut(s)	623, 625
AluBI	AGCT	9 cut(s)	218, 321, 560, 1186, 1192, 1227, 1252, 1460, 1526
AluI	AGCT	9 cut(s)	218, 321, 560, 1186, 1192, 1227, 1252, 1460, 1526
Alw21I	GWGCWC	1 cut(s)	1462
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	686, 1075
AoxI	GGCC	2 cut(s)	121, 1022
ApeKI	GCWGC	9 cut(s)	65, 68, 112, 140, 318, 560, 860, 1186, 1189
ApoI	RAATTY	4 cut(s)	435, 518, 666, 988
Asp700I	GAANNNNTTC	1 cut(s)	1384
AspS9I	GGNCC	4 cut(s)	334, 577, 896, 1439
AsuHPI	GGTGA	4 cut(s)	142, 725, 767, 1333
AvaII	GGWCC	4 cut(s)	334, 577, 896, 1439
BanII	GRGCYC	1 cut(s)	1462
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	1462
BbvI	GCAGC	9 cut(s)	52, 55, 124, 127, 330, 547, 847, 1173, 1201
BccI	CCATC	4 cut(s)	77, 346, 566, 1058
BceAI	ACGGC	1 cut(s)	1037
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BclI	TGATCA	2 cut(s)	501, 757
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	174, 1007
BfmI	CTRYAG	3 cut(s)	117, 906, 1187
BisI	GCNGC	9 cut(s)	66, 69, 113, 141, 319, 561, 861, 1187, 1190
BlsI	GCNGC	9 cut(s)	67, 70, 114, 142, 320, 562, 862, 1188, 1191
Bme18I	GGWCC	4 cut(s)	334, 577, 896, 1439
BmgT120I	GGNCC	4 cut(s)	334, 577, 896, 1439
BmiI	GGNNCC	5 cut(s)	58, 335, 336, 454, 578
BmrI	ACTGGG	1 cut(s)	1125
BmsI	GCATC	2 cut(s)	338, 360
BmuI	ACTGGG	1 cut(s)	1125
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	60, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 330, 1436
Bse1I	ACTGG	5 cut(s)	319, 623, 797, 1120, 1181
Bse3DI	GCAATG	1 cut(s)	1293
BseDI	CCNNGG	2 cut(s)	60, 580
BseGI	GGATG	4 cut(s)	193, 502, 881, 1426
BseLI	CCNNNNNNNGG	3 cut(s)	84, 330, 1436
BseMI	GCAATG	1 cut(s)	1293
BseMII	CTCAG	4 cut(s)	83, 888, 929, 1519
BseNI	ACTGG	5 cut(s)	319, 623, 797, 1120, 1181
BseRI	GAGGAG	1 cut(s)	1134
BseXI	GCAGC	9 cut(s)	52, 55, 124, 127, 330, 547, 847, 1173, 1201
BsgI	GTGCAG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	123, 1024
BsiHKAI	GWGCWC	1 cut(s)	1462
BslFI	GGGAC	2 cut(s)	320, 755
BslI	CCNNNNNNNGG	3 cut(s)	84, 330, 1436
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	320, 755
BsmI	GAATGC	2 cut(s)	142, 1298
BsnI	GGCC	2 cut(s)	123, 1024
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	1462
Bsp143I	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
BspACI	CCGC	2 cut(s)	476, 1433
BspANI	GGCC	2 cut(s)	123, 1024
BspCNI	CTCAG	4 cut(s)	84, 887, 928, 1518
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	5 cut(s)	58, 335, 336, 454, 578
BspMAI	CTGCAG	1 cut(s)	1191
BspPI	GGATC	2 cut(s)	686, 1075
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	1293
BsrI	ACTGG	5 cut(s)	319, 623, 797, 1120, 1181
BssECI	CCNNGG	2 cut(s)	60, 580
BssMI	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
BssT1I	CCWWGG	2 cut(s)	60, 580
Bst4CI	ACNGT	4 cut(s)	567, 1286, 1359, 1486
BstC8I	GCNNGC	2 cut(s)	394, 662
BstDEI	CTNAG	6 cut(s)	92, 556, 874, 915, 1400, 1505
BstF5I	GGATG	4 cut(s)	193, 502, 881, 1426
BstKTI	GATC	7 cut(s)	504, 514, 694, 720, 760, 921, 1070
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
BstMWI	GCNNNNNNNGC	4 cut(s)	852, 935, 1198, 1432
BstSFI	CTRYAG	3 cut(s)	117, 906, 1187
BstV1I	GCAGC	9 cut(s)	52, 55, 124, 127, 330, 547, 847, 1173, 1201
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	1067
BstXI	CCANNNNNNTGG	2 cut(s)	260, 932
BstYI	RGATCY	1 cut(s)	1067
BsuRI	GGCC	2 cut(s)	123, 1024
BtsCI	GGATG	4 cut(s)	193, 502, 881, 1426
BtsIMutI	CAGTG	4 cut(s)	478, 630, 1104, 1491
Cac8I	GCNNGC	2 cut(s)	394, 662
CciI	TCATGA	1 cut(s)	688
Cfr13I	GGNCC	4 cut(s)	334, 577, 896, 1439
Csp6I	GTAC	3 cut(s)	405, 1019, 1152
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	5 cut(s)	7, 637, 689, 926, 1303
CviQI	GTAC	3 cut(s)	405, 1019, 1152
DdeI	CTNAG	6 cut(s)	92, 556, 874, 915, 1400, 1505
DpnI	GATC	7 cut(s)	503, 513, 693, 719, 759, 920, 1069
DpnII	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
DraIII	CACNNNGTG	1 cut(s)	1486
Ecl136II	GAGCTC	1 cut(s)	1460
Eco130I	CCWWGG	2 cut(s)	60, 580
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	1462
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	1045
Eco47I	GGWCC	4 cut(s)	334, 577, 896, 1439
Eco53kI	GAGCTC	1 cut(s)	1460
Eco57I	CTGAAG	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	1460
EcoO109I	RGGNCCY	3 cut(s)	334, 577, 1439
EcoRV	GATATC	1 cut(s)	1045
EcoT14I	CCWWGG	2 cut(s)	60, 580
EcoT22I	ATGCAT	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	1462
ErhI	CCWWGG	2 cut(s)	60, 580
FaeI	CATG	5 cut(s)	10, 640, 692, 929, 1306
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	320, 755
FatI	CATG	5 cut(s)	6, 636, 688, 925, 1302
FauI	CCCGC	1 cut(s)	1440
FauNDI	CATATG	2 cut(s)	654, 1060
FbaI	TGATCA	2 cut(s)	501, 757
FblI	GTMKAC	1 cut(s)	1173
Fnu4HI	GCNGC	9 cut(s)	66, 69, 113, 141, 319, 561, 861, 1187, 1190
FokI	GGATG	4 cut(s)	200, 509, 868, 1433
FriOI	GRGCYC	1 cut(s)	1462
Fsp4HI	GCNGC	9 cut(s)	66, 69, 113, 141, 319, 561, 861, 1187, 1190
FspBI	CTAG	2 cut(s)	174, 1007
GluI	GCNGC	9 cut(s)	66, 69, 113, 141, 319, 561, 861, 1187, 1190
HaeIII	GGCC	2 cut(s)	123, 1024
Hin1II	CATG	5 cut(s)	10, 640, 692, 929, 1306
HincII	GTYRAC	1 cut(s)	1282
HindII	GTYRAC	1 cut(s)	1282
HindIII	AAGCTT	1 cut(s)	1250
HinfI	GANTC	6 cut(s)	147, 543, 872, 1094, 1124, 1180
HphI	GGTGA	4 cut(s)	142, 725, 767, 1333
Hpy166II	GTNNAC	3 cut(s)	871, 1174, 1282
Hpy188I	TCNGA	2 cut(s)	234, 918
Hpy188III	TCNNGA	7 cut(s)	106, 345, 515, 596, 689, 772, 876
Hpy8I	GTNNAC	3 cut(s)	871, 1174, 1282
HpyAV	CCTTC	6 cut(s)	533, 895, 1114, 1263, 1348, 1370
HpyCH4III	ACNGT	4 cut(s)	567, 1286, 1359, 1486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	852, 935, 1198, 1432
HpyF3I	CTNAG	6 cut(s)	92, 556, 874, 915, 1400, 1505
Hsp92II	CATG	5 cut(s)	10, 640, 692, 929, 1306
KflI	GGGWCCC	1 cut(s)	334
Ksp22I	TGATCA	2 cut(s)	501, 757
Kzo9I	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
LmnI	GCTCC	5 cut(s)	62, 326, 935, 1457, 1472
Lsp1109I	GCAGC	9 cut(s)	52, 55, 124, 127, 330, 547, 847, 1173, 1201
LweI	GCATC	2 cut(s)	338, 360
MaeI	CTAG	2 cut(s)	174, 1007
MaeIII	GTNAC	3 cut(s)	368, 529, 788
MalI	GATC	7 cut(s)	503, 513, 693, 719, 759, 920, 1069
MboI	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
MboII	GAAGA	2 cut(s)	14, 333
MfeI	CAATTG	1 cut(s)	1323
MflI	RGATCY	1 cut(s)	1067
MhlI	GDGCHC	1 cut(s)	1462
MlyI	GAGTC	4 cut(s)	552, 866, 1103, 1133
MmeI	TCCRAC	3 cut(s)	719, 787, 923
MnlI	CCTC	9 cut(s)	134, 170, 520, 704, 735, 1155, 1355, 1437, 1452
Mph1103I	ATGCAT	1 cut(s)	353
MroXI	GAANNNNTTC	1 cut(s)	1384
MseI	TTAA	6 cut(s)	15, 198, 213, 486, 1194, 1368
MslI	CAYNNNNRTG	3 cut(s)	623, 625, 765
MspA1I	CMGCKG	1 cut(s)	1186
MunI	CAATTG	1 cut(s)	1323
Mva1269I	GAATGC	2 cut(s)	142, 1298
MwoI	GCNNNNNNNGC	4 cut(s)	852, 935, 1198, 1432
NdeI	CATATG	2 cut(s)	654, 1060
NdeII	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
NlaIII	CATG	5 cut(s)	10, 640, 692, 929, 1306
NlaIV	GGNNCC	5 cut(s)	58, 335, 336, 454, 578
NsiI	ATGCAT	1 cut(s)	353
OliI	CACNNNNGTG	2 cut(s)	623, 625
PagI	TCATGA	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	123
PctI	GAATGC	2 cut(s)	142, 1298
PdmI	GAANNNNTTC	1 cut(s)	1384
PfeI	GAWTC	2 cut(s)	147, 1180
PflMI	CCANNNNNTGG	1 cut(s)	330
PkrI	GCNGC	9 cut(s)	67, 70, 114, 142, 320, 562, 862, 1188, 1191
PleI	GAGTC	4 cut(s)	551, 866, 1102, 1132
PpsI	GAGTC	4 cut(s)	551, 866, 1102, 1132
PpuMI	RGGWCCY	3 cut(s)	334, 577, 1439
Psp124BI	GAGCTC	1 cut(s)	1462
Psp5II	RGGWCCY	3 cut(s)	334, 577, 1439
PspN4I	GGNNCC	5 cut(s)	58, 335, 336, 454, 578
PspPI	GGNCC	4 cut(s)	334, 577, 896, 1439
PspPPI	RGGWCCY	3 cut(s)	334, 577, 1439
PsrI	GAACNNNNNNTAC	2 cut(s)	1347, 1379
PstI	CTGCAG	1 cut(s)	1191
PsuI	RGATCY	1 cut(s)	1067
PvuII	CAGCTG	1 cut(s)	1186
RsaI	GTAC	3 cut(s)	406, 1020, 1153
RsaNI	GTAC	3 cut(s)	405, 1019, 1152
RseI	CAYNNNNRTG	3 cut(s)	623, 625, 765
SacI	GAGCTC	1 cut(s)	1462
SaqAI	TTAA	6 cut(s)	15, 198, 213, 486, 1194, 1368
SatI	GCNGC	9 cut(s)	66, 69, 113, 141, 319, 561, 861, 1187, 1190
Sau3AI	GATC	7 cut(s)	501, 511, 691, 717, 757, 918, 1067
Sau96I	GGNCC	4 cut(s)	334, 577, 896, 1439
SchI	GAGTC	4 cut(s)	552, 866, 1103, 1133
SduI	GDGCHC	1 cut(s)	1462
SfaNI	GCATC	2 cut(s)	338, 360
SfcI	CTRYAG	3 cut(s)	117, 906, 1187
SinI	GGWCC	4 cut(s)	334, 577, 896, 1439
SmiMI	CAYNNNNRTG	3 cut(s)	623, 625, 765
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	2 cut(s)	476, 1433
SspI	AATATT	4 cut(s)	196, 223, 257, 1221
SspMI	CTAG	2 cut(s)	174, 1007
SstI	GAGCTC	1 cut(s)	1462
StuI	AGGCCT	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	60, 580
TaaI	ACNGT	4 cut(s)	567, 1286, 1359, 1486
TaqI	TCGA	1 cut(s)	401
TaqII	GACCGA	1 cut(s)	1037
TfiI	GAWTC	2 cut(s)	147, 1180
Tru1I	TTAA	6 cut(s)	15, 198, 213, 486, 1194, 1368
Tru9I	TTAA	6 cut(s)	15, 198, 213, 486, 1194, 1368
TscAI	CASTG	4 cut(s)	478, 630, 1104, 1491
TseI	GCWGC	9 cut(s)	65, 68, 112, 140, 318, 560, 860, 1186, 1189
TspDTI	ATGAA	6 cut(s)	365, 1047, 1125, 1152, 1291, 1305
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	4 cut(s)	478, 630, 1104, 1491
Van91I	CCANNNNNTGG	1 cut(s)	330
VpaK11BI	GGWCC	4 cut(s)	334, 577, 896, 1439
XapI	RAATTY	4 cut(s)	435, 518, 666, 988
XmiI	GTMKAC	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	1384
XspI	CTAG	2 cut(s)	174, 1007
Zsp2I	ATGCAT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.