Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002058

Physical Location & Seq

Genomic Coordinates Reverse (-)

2369461 .. 2372569

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0029600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTATCTAATCCTCCGCAGTTTAAAAACACACAAATTCAACCGAAAGCTCCAAAATCTCCAAAACCCACAAGCCAAAAGTTAGGAGCAGAAATGGAGATCTCATCTTTAACTCTATCCACTCCAAGATTTCCACCTTCAGTTCCTTTCTCTTCATCCCAGTCCACCTTTTTGACCAACAATGGCGGCACCAATTTGTTCATGACCAAAAACAAGGTCAACAGCAGGGGTTTGGTTGGGGGCAGGAGCAGAATCAGAACCAGAACTGAAAGAGCCAAGAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGGGTGCCTGAGCTTGCTGTTATTGCTGGGGTGGCTGCTCTGGTTTTTGGACCCAAGAAGTTACCTGAAGTGGGCAAGAGTTTAGGGAAGACTATCAAGAGCTTCCAACAGGCTGCAAAGGAGTTTGAGACAGAACTTAAAAAAGAACCTGAGCCTAATACAGAGGTTCTCACTGATGAACCTACCACGGTGAGTGAAGAACAAAAACCAGAAGTCAAGGTCCCAAGCTCCCAGGAAAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

185

Amino Acids

20.01

Weight (kDa)

9.83

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TatA_B_E	PF02416	102 - 149	5e-18	mttA/Hcf106 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22050
fragaria_vesca	FvH4_4g21720 FvH4_4g21720 FvH4_4g21720 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500 FvH4_6g08500
malus_domestica	MD04G1186500.v1.1 MD04G1186600.v1.1 MD13G1138100.v1.1 MD16G1133900.v1.1
prunus_persica	Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.1G103000_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1 Prupe.6G304600_v2.0.a1
pyrus_communis	pycom04g16480 pycom13g12020 pycom16g11820
rosa_chinensis	RchiOBHm_Chr3g0458541 RchiOBHm_Chr4g0427921
rosa_laevigata	RLG00000007200 RLG00000025149
rosa_roxburghii	Rroxscaffold_2G00125080 Rroxscaffold_5G00369590 Rroxscaffold_6G00420990
rosa_rugosa	Rorug03G0029500 Rorug03G0029500 Rorug03G0029500 Rorug03G0029600 Rorug04G0220600
rosa_samantha	Rh3AG087900 Rh3BG091000 Rh3CG091100 Rh3DG091900 Rh4AG277600 Rh4BG283400 Rh4CG298900 Rh4DG280600
rosa_wichuraiana	Rw3G007510 Rw4G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 316
AciI	CCGC	2 cut(s)	17, 186
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	123, 399
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	4 cut(s)	50, 325, 414, 540
AluI	AGCT	4 cut(s)	50, 325, 414, 540
Alw26I	GTCTC	2 cut(s)	290, 434
ApeKI	GCWGC	2 cut(s)	347, 425
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspS9I	GGNCC	2 cut(s)	362, 532
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	2 cut(s)	362, 532
BanI	GGYRCC	2 cut(s)	188, 316
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	334, 412
BciT130I	CCWGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	290, 434
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	3 cut(s)	187, 348, 426
BlsI	GCNGC	3 cut(s)	188, 349, 427
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	2 cut(s)	362, 532
BmgT120I	GGNCC	2 cut(s)	362, 532
BmiI	GGNNCC	4 cut(s)	190, 318, 364, 534
BmrFI	CCNGG	1 cut(s)	545
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	407
Bpu10I	CCTNAGC	2 cut(s)	321, 462
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	498, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	2 cut(s)	498, 543
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	312, 453
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	334, 412
BseYI	CCCAGC	1 cut(s)	338
BshNI	GGYRCC	2 cut(s)	188, 316
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	290, 434
BsmFI	GGGAC	1 cut(s)	518
Bso31I	GGTCTC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	17, 186
BspCNI	CTCAG	2 cut(s)	313, 454
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	190, 318, 364, 534
BspT107I	GGYRCC	2 cut(s)	188, 316
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	498, 543
BssMI	GATC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	321, 462
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	290, 434
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 344
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	334, 412
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	327
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	362, 532
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	9 cut(s)	50, 75, 275, 325, 347, 414, 425, 466, 540
CviKI_1	RGCY	9 cut(s)	50, 75, 275, 325, 347, 414, 425, 466, 540
DdeI	CTNAG	2 cut(s)	321, 462
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
DraI	TTTAAA	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	362, 532
Eco57I	CTGAAG	2 cut(s)	123, 399
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	543
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	203, 556
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	187, 348, 426
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	3 cut(s)	187, 348, 426
GluI	GCNGC	3 cut(s)	187, 348, 426
GsaI	CCCAGC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	252
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	165, 220
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	202, 409
Hpy8I	GTNNAC	2 cut(s)	165, 220
HpyAV	CCTTC	2 cut(s)	147, 274
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4V	TGCA	1 cut(s)	428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 344
HpyF3I	CTNAG	2 cut(s)	321, 462
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	4 cut(s)	55, 86, 246, 545
Lsp1109I	GCAGC	2 cut(s)	334, 412
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	3 cut(s)	144, 412, 521
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	2 cut(s)	36, 193
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	2 cut(s)	24, 469
MseI	TTAA	3 cut(s)	24, 110, 450
MspR9I	CCNGG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	335, 344
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	4 cut(s)	190, 318, 364, 534
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	188, 349, 427
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	4 cut(s)	190, 318, 364, 534
PspPI	GGNCC	2 cut(s)	362, 532
PspPPI	RGGWCCY	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	24, 110, 450
SatI	GCNGC	3 cut(s)	187, 348, 426
Sau3AI	GATC	1 cut(s)	99
Sau96I	GGNCC	2 cut(s)	362, 532
ScrFI	CCNGG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	362, 532
Sse9I	AATT	2 cut(s)	36, 193
SsiI	CCGC	2 cut(s)	17, 186
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	502
TasI	AATT	2 cut(s)	36, 193
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	3 cut(s)	24, 110, 450
Tru9I	TTAA	3 cut(s)	24, 110, 450
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	2 cut(s)	347, 425
TspDTI	ATGAA	3 cut(s)	144, 190, 504
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	362, 532
XapI	RAATTY	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.