FvH4_4g21720

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
24718009 .. 24722985
4977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21720.t2

Sequence Viewer

Length: 1521 bp
ATGATCATGGCGTTTAAGTGGGTTCTAGTTGTAATTTGGATATGGGTTTGGGCAGCTTACTTGGCTGCTACGCAATCCGTTGATGGGTTAGTGAGGATTAGTCTAAAGAAGCATCCTTTAGACTTAAGTAGGATAAATGCTGCAAGGATCACCAATAGAGTAGCTTATCAACAGAGTGATAATGGGGATAATCTCAAAGCTAACATTGTGTATTTGAAGAATTATCTTGATATCCAATTTTATGGAGAAATTGGTATTGGGTCACCCACACAAACCTTTGCTGTTGTCTTTGATACTGGAAGCTCCAATCTTTGGGTCCCCTCGTCGAGATGCGTCCTTTCTGTTGGTTGCTATTTTCATTCTAAGTACAGGGCAACAATGTCAAGTACCTATACCAAAATTGGAATACATTGCAAAATTCCTTATGGCTCTGGTTCTGTTTCCGGCTACTTCAGTGGGGATAATGTTAAAGTTGGGGATATCATCGTTAAAGATCAAGAATTTGTTGAGGTTACAAGGGAAGGGTTTGTAGCATTCTTAGCTGCACGGTTTGATGGGGTTTTTGGACTTGGATTTCAAGACATTTCTGTTGGTGAAGCCACACCAGTGTGGTATAACATGGTGCAACAAGGTCGTATGAGCCAGAAGATTTTCTCTATTTGGCTCAATCATGATCCAAAATCACCAGTGGGAGGTGAAATCGTCTTTGGAGGATATGATTGGAAGCACTTTACGGGTGATCACACTTATGTCCCGATTTCACATAAGGGATACTGGCAGATTGAGGTGGGAGATATCATTGTTGCCGACTTCTCAACAGGATTCTGCAAGGGTGGCTGTGCTGCCATTGTGGACTCAGGGACATCCTTACTTGCTGGTCCAACTACTGTTGTGGCTCAGATCAACCATGCCATCGGAGCAGAAGGTTTGGCCAGCTTGGAATGTAAAAATGTAGTTTACACTTATGGAAACCTGATGTGGGATTATTTAGTATCTGGGGTACGGCCTGATGTACTGTGTGTGGATATCAGCCTTTGTTCATATGATGGACCTCATCATGTAGACAATTATATTGAGACAGTAGTTCGAAATAGAACTCAGAAGGAGGCATCTGTTAACGAAACTCCTTTATGTACTTTGTGTGAGATGATTGCCTACTGGATTCAACTTCAACTTAGAAAACAAGTATCGAGGGAACAAGTATTTAAGCATGTAAATGAGCTGTGTGAGAAGCTTCCAAATCCTGTGCGAAGATCGTTTGTCAACTGCGATAACCTTGCAGCCATGCCAGATGTTTCCTTCGTGATTGGAAACAAAACCTTCACCCTCACTCCAGAACAGTATATACTTAAAGTTGAAGAAAGGTGTTCTACTGTCTGCCTTAGCGGATTTGTTGCCTTGGATGTGCCTCCTCCACAAGGTCCACTATGGGTTCTTGGAGCTCTGTTCCTGGGTGCATACCACACTGTGTTTGACTTTGGTAATCTCAGGGTAGGATTTGCCAAAGCTGCAATCCTTTGA

Protein Analysis

507

Amino Acids

56.07

Weight (kDa)

6.31

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 79 - 469 1.4e-90 Eukaryotic aspartyl protease
TAXi_N PF14543 81 - 238 1.3e-06 Xylanase inhibitor N-terminal
SapB_2 PF03489 314 - 346 9.2e-07 Saposin-like type B, region 2
SapB_1 PF05184 376 - 413 2.5e-07 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 312
AccI GTMKAC 1 cut(s) 1062
AciI CCGC 1 cut(s) 1386
AclWI GGATC 2 cut(s) 155, 668
AcoI YGGCCR 1 cut(s) 930
AcsI RAATTY 2 cut(s) 417, 500
AcuI CTGAAG 1 cut(s) 436
AdeI CACNNNGTG 1 cut(s) 1468
AfaI GTAC 5 cut(s) 368, 388, 1002, 1014, 1135
AfiI CCNNNNNNNGG 5 cut(s) 84, 312, 692, 979, 1418
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 5 cut(s) 217, 578, 1166, 1172, 1358
AjnI CCWGG 1 cut(s) 1449
AjuI GAANNNNNNNTTGG 4 cut(s) 240, 272, 690, 722
AleI CACNNNNGTG 2 cut(s) 605, 607
Alw21I GWGCWC 1 cut(s) 1444
Alw26I GTCTC 1 cut(s) 1070
AlwI GGATC 2 cut(s) 155, 668
AoxI GGCC 2 cut(s) 930, 1004
ApeKI GCWGC 7 cut(s) 53, 65, 140, 542, 842, 1280, 1508
ApoI RAATTY 2 cut(s) 417, 500
Asp700I GAANNNNTTC 1 cut(s) 650
AspS9I GGNCC 4 cut(s) 316, 878, 1049, 1421
AsuHPI GGTGA 7 cut(s) 142, 255, 605, 675, 707, 749, 1315
AsuII TTCGAA 1 cut(s) 1087
AvaII GGWCC 4 cut(s) 316, 878, 1049, 1421
BalI TGGCCA 1 cut(s) 932
BanII GRGCYC 1 cut(s) 1444
Bbv12I GWGCWC 1 cut(s) 1444
BbvI GCAGC 7 cut(s) 52, 65, 127, 529, 829, 1292, 1495
BccI CCATC 4 cut(s) 77, 548, 920, 1040
BceAI ACGGC 1 cut(s) 1019
BcgI CGANNNNNNTGC 4 cut(s) 614, 648, 1259, 1293
BciT130I CCWGG 1 cut(s) 1451
BciVI GTATCC 1 cut(s) 764
BclI TGATCA 2 cut(s) 3, 739
BcoDI GTCTC 1 cut(s) 1070
BfaI CTAG 1 cut(s) 26
BfrI CTTAAG 1 cut(s) 124
BfuI GTATCC 1 cut(s) 764
BisI GCNGC 7 cut(s) 54, 66, 141, 543, 843, 1281, 1509
BlsI GCNGC 7 cut(s) 55, 67, 142, 544, 844, 1282, 1510
Bme1390I CCNGG 1 cut(s) 1451
Bme18I GGWCC 4 cut(s) 316, 878, 1049, 1421
BmgT120I GGNCC 4 cut(s) 316, 878, 1049, 1421
BmiI GGNNCC 2 cut(s) 317, 318
BmrFI CCNGG 1 cut(s) 1451
BmsI GCATC 3 cut(s) 121, 320, 1118
BpmI CTGGAG 1 cut(s) 1317
Bpu10I CCTNAGC 1 cut(s) 1382
Bpu14I TTCGAA 1 cut(s) 1087
BsaJI CCNNGG 2 cut(s) 1398, 1450
BsaXI ACNNNNNCTCC 2 cut(s) 1315, 1345
Bsc4I CCNNNNNNNGG 5 cut(s) 84, 312, 692, 979, 1418
Bse1I ACTGG 5 cut(s) 301, 605, 686, 779, 1163
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 1 cut(s) 1451
BseDI CCNNGG 2 cut(s) 1398, 1450
BseGI GGATG 3 cut(s) 112, 863, 1408
BseLI CCNNNNNNNGG 5 cut(s) 84, 312, 692, 979, 1418
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 4 cut(s) 870, 911, 1112, 1501
BseNI ACTGG 5 cut(s) 301, 605, 686, 779, 1163
BseRI GAGGAG 1 cut(s) 1401
BseXI GCAGC 7 cut(s) 52, 65, 127, 529, 829, 1292, 1495
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 2 cut(s) 932, 1006
BsiHKAI GWGCWC 1 cut(s) 1444
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 3 cut(s) 302, 737, 874
BslI CCNNNNNNNGG 5 cut(s) 84, 312, 692, 979, 1418
BsmAI GTCTC 1 cut(s) 1070
BsmFI GGGAC 3 cut(s) 302, 737, 874
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 2 cut(s) 932, 1006
Bsp119I TTCGAA 1 cut(s) 1087
Bsp1286I GDGCHC 1 cut(s) 1444
Bsp143I GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
BspACI CCGC 1 cut(s) 1386
BspANI GGCC 2 cut(s) 932, 1006
BspCNI CTCAG 4 cut(s) 869, 910, 1111, 1500
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 317, 318
BspPI GGATC 2 cut(s) 155, 668
BspT104I TTCGAA 1 cut(s) 1087
BspTI CTTAAG 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 5 cut(s) 301, 605, 686, 779, 1163
BssECI CCNNGG 2 cut(s) 1398, 1450
BssMI GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
BssT1I CCWWGG 1 cut(s) 1398
Bst2UI CCWGG 1 cut(s) 1451
Bst4CI ACNGT 7 cut(s) 549, 889, 1017, 1081, 1341, 1375, 1468
BstAFI CTTAAG 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 1087
BstC8I GCNNGC 1 cut(s) 934
BstDEI CTNAG 8 cut(s) 363, 538, 856, 897, 1098, 1175, 1382, 1487
BstEII GGTNACC 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 1416
BstF5I GGATG 3 cut(s) 112, 863, 1408
BstKTI GATC 7 cut(s) 6, 150, 496, 676, 742, 903, 1256
BstMAI GTCTC 1 cut(s) 1070
BstMBI GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
BstMWI GCNNNNNNNGC 5 cut(s) 62, 539, 834, 917, 1508
BstNI CCWGG 1 cut(s) 1451
BstNSI RCATGY 1 cut(s) 1214
BstPI GGTNACC 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 1449
BstV1I GCAGC 7 cut(s) 52, 65, 127, 529, 829, 1292, 1495
BstXI CCANNNNNNTGG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 2 cut(s) 932, 1006
BtsCI GGATG 3 cut(s) 112, 863, 1408
BtsIMutI CAGTG 4 cut(s) 460, 612, 693, 1464
Cac8I GCNNGC 1 cut(s) 934
CciI TCATGA 1 cut(s) 670
Cfr13I GGNCC 4 cut(s) 316, 878, 1049, 1421
CseI GACGC 1 cut(s) 322
Csp6I GTAC 5 cut(s) 367, 387, 1001, 1013, 1134
CviAII CATG 7 cut(s) 7, 619, 671, 908, 1058, 1211, 1285
CviQI GTAC 5 cut(s) 367, 387, 1001, 1013, 1134
DdeI CTNAG 8 cut(s) 363, 538, 856, 897, 1098, 1175, 1382, 1487
DpnI GATC 7 cut(s) 5, 149, 495, 675, 741, 902, 1255
DpnII GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
DraIII CACNNNGTG 1 cut(s) 1468
EaeI YGGCCR 1 cut(s) 930
Ecl136II GAGCTC 1 cut(s) 1442
Eco130I CCWWGG 1 cut(s) 1398
Eco24I GRGCYC 1 cut(s) 1444
Eco32I GATATC 4 cut(s) 232, 481, 796, 1027
Eco47I GGWCC 4 cut(s) 316, 878, 1049, 1421
Eco53kI GAGCTC 1 cut(s) 1442
Eco57I CTGAAG 1 cut(s) 436
Eco91I GGTNACC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 1442
EcoNI CCTNNNNNAGG 1 cut(s) 1416
EcoO109I RGGNCCY 1 cut(s) 316
EcoO65I GGTNACC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 1449
EcoRV GATATC 4 cut(s) 232, 481, 796, 1027
EcoT14I CCWWGG 1 cut(s) 1398
EcoT38I GRGCYC 1 cut(s) 1444
ErhI CCWWGG 1 cut(s) 1398
FaeI CATG 7 cut(s) 10, 622, 674, 911, 1061, 1214, 1288
FaqI GGGAC 3 cut(s) 302, 737, 874
FatI CATG 7 cut(s) 6, 618, 670, 907, 1057, 1210, 1284
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 2 cut(s) 3, 739
FblI GTMKAC 1 cut(s) 1062
Fnu4HI GCNGC 7 cut(s) 54, 66, 141, 543, 843, 1281, 1509
FokI GGATG 3 cut(s) 99, 850, 1415
FriOI GRGCYC 1 cut(s) 1444
Fsp4HI GCNGC 7 cut(s) 54, 66, 141, 543, 843, 1281, 1509
FspBI CTAG 1 cut(s) 26
GluI GCNGC 7 cut(s) 54, 66, 141, 543, 843, 1281, 1509
GsuI CTGGAG 1 cut(s) 1317
HaeIII GGCC 2 cut(s) 932, 1006
HapII CCGG 1 cut(s) 444
HgaI GACGC 1 cut(s) 322
Hin1II CATG 7 cut(s) 10, 622, 674, 911, 1061, 1214, 1288
HincII GTYRAC 2 cut(s) 1117, 1264
HindII GTYRAC 2 cut(s) 1117, 1264
HindIII AAGCTT 1 cut(s) 1232
HinfI GANTC 3 cut(s) 822, 854, 1162
HpaI GTTAAC 1 cut(s) 1117
HpaII CCGG 1 cut(s) 444
HphI GGTGA 7 cut(s) 142, 255, 605, 675, 707, 749, 1315
Hpy166II GTNNAC 6 cut(s) 853, 958, 1063, 1117, 1264, 1424
Hpy188I TCNGA 3 cut(s) 900, 917, 1101
Hpy188III TCNNGA 8 cut(s) 227, 327, 497, 578, 671, 754, 1303, 1334
Hpy8I GTNNAC 6 cut(s) 853, 958, 1063, 1117, 1264, 1424
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 5 cut(s) 515, 917, 1096, 1309, 1330
HpyCH4III ACNGT 7 cut(s) 549, 889, 1017, 1081, 1341, 1375, 1468
HpyCH4V TGCA 8 cut(s) 143, 414, 545, 625, 828, 1280, 1457, 1511
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 539, 834, 917, 1508
HpyF3I CTNAG 8 cut(s) 363, 538, 856, 897, 1098, 1175, 1382, 1487
Hsp92II CATG 7 cut(s) 10, 622, 674, 911, 1061, 1214, 1288
KflI GGGWCCC 1 cut(s) 316
Ksp22I TGATCA 2 cut(s) 3, 739
KspAI GTTAAC 1 cut(s) 1117
Kzo9I GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
LmnI GCTCC 3 cut(s) 308, 917, 1439
Lsp1109I GCAGC 7 cut(s) 52, 65, 127, 529, 829, 1292, 1495
LweI GCATC 3 cut(s) 121, 320, 1118
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 261, 511
MalI GATC 7 cut(s) 5, 149, 495, 675, 741, 902, 1255
MboI GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
MboII GAAGA 4 cut(s) 229, 658, 1263, 1370
MhlI GDGCHC 1 cut(s) 1444
MlsI TGGCCA 1 cut(s) 932
MluCI AATT 8 cut(s) 33, 220, 236, 249, 399, 417, 500, 1066
MluNI TGGCCA 1 cut(s) 932
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 905
Mox20I TGGCCA 1 cut(s) 932
MroXI GAANNNNTTC 1 cut(s) 650
MscI TGGCCA 1 cut(s) 932
MseI TTAA 7 cut(s) 15, 125, 468, 489, 1116, 1206, 1350
MslI CAYNNNNRTG 4 cut(s) 605, 607, 747, 1215
Msp20I TGGCCA 1 cut(s) 932
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 1451
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 1451
MwoI GCNNNNNNNGC 5 cut(s) 62, 539, 834, 917, 1508
NdeI CATATG 1 cut(s) 1042
NdeII GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
NlaIII CATG 7 cut(s) 10, 622, 674, 911, 1061, 1214, 1288
NlaIV GGNNCC 2 cut(s) 317, 318
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 1 cut(s) 1214
NspV TTCGAA 1 cut(s) 1087
OliI CACNNNNGTG 2 cut(s) 605, 607
PagI TCATGA 1 cut(s) 670
PctI GAATGC 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 2 cut(s) 822, 1162
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 7 cut(s) 55, 67, 142, 544, 844, 1282, 1510
PleI GAGTC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 1444
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 1449
PspEI GGTNACC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 1449
PspN4I GGNNCC 2 cut(s) 317, 318
PspPI GGNCC 4 cut(s) 316, 878, 1049, 1421
PspPPI RGGWCCY 1 cut(s) 316
PsrI GAACNNNNNNTAC 2 cut(s) 1329, 1361
RsaI GTAC 5 cut(s) 368, 388, 1002, 1014, 1135
RsaNI GTAC 5 cut(s) 367, 387, 1001, 1013, 1134
RseI CAYNNNNRTG 4 cut(s) 605, 607, 747, 1215
SacI GAGCTC 1 cut(s) 1444
SaqAI TTAA 7 cut(s) 15, 125, 468, 489, 1116, 1206, 1350
SatI GCNGC 7 cut(s) 54, 66, 141, 543, 843, 1281, 1509
Sau3AI GATC 7 cut(s) 3, 147, 493, 673, 739, 900, 1253
Sau96I GGNCC 4 cut(s) 316, 878, 1049, 1421
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 1 cut(s) 1451
SduI GDGCHC 1 cut(s) 1444
SfaNI GCATC 3 cut(s) 121, 320, 1118
SfuI TTCGAA 1 cut(s) 1087
SinI GGWCC 4 cut(s) 316, 878, 1049, 1421
SmiMI CAYNNNNRTG 4 cut(s) 605, 607, 747, 1215
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 8 cut(s) 33, 220, 236, 249, 399, 417, 500, 1066
SsiI CCGC 1 cut(s) 1386
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 1444
StyD4I CCNGG 1 cut(s) 1449
StyI CCWWGG 1 cut(s) 1398
TaaI ACNGT 7 cut(s) 549, 889, 1017, 1081, 1341, 1375, 1468
TaqI TCGA 3 cut(s) 326, 1087, 1190
TasI AATT 8 cut(s) 33, 220, 236, 249, 399, 417, 500, 1066
TatI WGTACW 3 cut(s) 366, 1012, 1133
TfiI GAWTC 2 cut(s) 822, 1162
Tru1I TTAA 7 cut(s) 15, 125, 468, 489, 1116, 1206, 1350
Tru9I TTAA 7 cut(s) 15, 125, 468, 489, 1116, 1206, 1350
TscAI CASTG 4 cut(s) 460, 612, 693, 1471
TseFI GTSAC 1 cut(s) 261
TseI GCWGC 7 cut(s) 53, 65, 140, 542, 842, 1280, 1508
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 347, 1029
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 4 cut(s) 460, 612, 693, 1471
Van91I CCANNNNNTGG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 4 cut(s) 316, 878, 1049, 1421
XagI CCTNNNNNAGG 1 cut(s) 1416
XapI RAATTY 2 cut(s) 417, 500
XceI RCATGY 1 cut(s) 1214
XmiI GTMKAC 1 cut(s) 1062
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.