MD13G1138100.v1.1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
10626956 .. 10630824
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1138100.v1.1.491

Sequence Viewer

Length: 1500 bp
ATGGGGTTGAAGGTACTTCTGGTTGCAATTTGCCTGTGGGTTTGGTCAGCCTCTTTGTCTAGTGCTACAAAATCCAGTGATGGGCTACTGAGAATTGGTCTAAAGAAGCAGCCTTTGGACCTCACCAGATTAAATGATGCAAGACTCACCAGGTCACAAGCTCTTCAACCCAATGATCTTAAATCCAACATTGTGTATCTGAAAAATTATCTGGACACCCAGTTTTATGGAGAGATTGCTATTGGCACCCCACCACAGTACTTGGGTGTTGTCTTTGACACTGGCAGCTCCAATCTGTGGGTCCCATCTTCAAGATGCATCTTTTCTATTTCTTGCTATTTTCATTCTAAATACAGGGCAAGCCTTTCAAGCACTTACTCCAAAATTGGAATACCCTGCAAAATTCCTTATGGGTCTGGTTCGATTTCCGGCTACTTCAGCAGAGATAATTCGAAAATTGGGAATGTTATCATCAAAGATCAAGAATTTGTTGAGATTACAAGGGAAGGATTCCTAACATTCTTAACGGCGAAGTTTGATGGAGTCCTTGGACTTGGATTTCAGGATATCTCTGTTGGTGAAGCCACACCAGTGTGGTTTAACATGGTGCAACAAGGTCATATGAGCCAGGAAATTTTCTCCATTTGGCTAAATCATGATCCAACATCGAAGTTGGGAGGTGAGATCGTCTTTGGTGGATTTGATTGGAGGCACTTTATTGGTGATCACACCTATGTCCCAATTTCACAAAAGGGTTACTGGCAGATTGAGGTTGGAGATGTTATCGTTGCAGACAATTCTACAGGACTGTGCAAGGGCGGGTGTGGTGCCATTATAGATTCAGGGACATCCTTCCTCGCTGGTCCAACTACTATTGTGGCTCAGATCAACCATGCCATTGGAGCAGACGGGCTTGCGAGCTTGGAATGTAAAAATGTCATTTCCACTTATGGAAATTTGATATGGGAATATTTAGTATCTGGGGTACGGCCTGATATAGTGTGTGTGGACATGGGTCTATGTTTATACGACAGTTCTCGGAATATAAACAATAACATTGAGTCAGTGATTGAGAGCAAAACCGGGAGGGAGTCATCAGTCGATGAAACTCCTTTATGTACCTTGTGTGAAATGGTAGTCTACTGGGTTCAACTACAGCTTAAAAAACAAATAGCAAAGGAAAAAATATTTAGCTATGTGAATGAGTTGTGCGAGAAGCTTCCAAATCCGGTAAAAAAGTCGTTTGTCAACTGTGATAACATTGCGTTCATGCCAGACATTTCATTTACAATTGGAAACAAATCCTTCGCCCTCTCTCCAGAACAGTACATACTTAAAGTTGAAGAAAAATGCTCCACTGTCTGCCTTAGTGGATTTACTGCTTTGGATGTGCCTCCTCCACAAGGTCCTCTATGGGTTCTTGGAGCTCTGTTCTTGGGAGCATACCACACGGTGTTTGACTTCGGTAATCTCAGGGTAGGATTCGCAAAAGCTACGTAG

Protein Analysis

500

Amino Acids

54.87

Weight (kDa)

5.87

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 74 - 498 4.1e-100 Eukaryotic aspartyl protease
SapB_2 PF03489 309 - 341 1.5e-10 Saposin-like type B, region 2
SapB_1 PF05184 371 - 408 2.9e-09 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 245, 827
AccB7I CCANNNNNTGG 1 cut(s) 297
AccI GTMKAC 1 cut(s) 1140
AciI CCGC 1 cut(s) 819
AclWI GGATC 1 cut(s) 653
AcsI RAATTY 4 cut(s) 402, 485, 633, 955
AcuI CTGAAG 1 cut(s) 421
AdeI CACNNNGTG 1 cut(s) 1453
AfaI GTAC 5 cut(s) 15, 260, 987, 1120, 1328
AfiI CCNNNNNNNGG 3 cut(s) 81, 297, 1403
AgsI TTSAA 6 cut(s) 10, 167, 312, 369, 1151, 1343
AjnI CCWGG 2 cut(s) 149, 627
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AleI CACNNNNGTG 2 cut(s) 590, 592
AluBI AGCT 8 cut(s) 161, 288, 921, 1159, 1194, 1219, 1427, 1493
AluI AGCT 8 cut(s) 161, 288, 921, 1159, 1194, 1219, 1427, 1493
Alw21I GWGCWC 1 cut(s) 1429
AlwI GGATC 1 cut(s) 653
AoxI GGCC 1 cut(s) 989
ApeKI GCWGC 2 cut(s) 109, 285
ApoI RAATTY 4 cut(s) 402, 485, 633, 955
AspS9I GGNCC 4 cut(s) 118, 301, 863, 1406
AsuC2I CCSGG 1 cut(s) 1084
AsuHPI GGTGA 5 cut(s) 115, 139, 590, 692, 734
AsuII TTCGAA 1 cut(s) 452
AvaII GGWCC 4 cut(s) 118, 301, 863, 1406
BanI GGYRCC 2 cut(s) 245, 827
BanII GRGCYC 1 cut(s) 1429
Bbv12I GWGCWC 1 cut(s) 1429
BbvI GCAGC 2 cut(s) 121, 297
BccI CCATC 3 cut(s) 74, 313, 533
BceAI ACGGC 2 cut(s) 543, 1004
BciT130I CCWGG 2 cut(s) 151, 629
BclI TGATCA 1 cut(s) 724
BcnI CCSGG 1 cut(s) 1084
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 801, 1154
BisI GCNGC 2 cut(s) 110, 286
BlsI GCNGC 2 cut(s) 111, 287
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 151, 629, 1084
Bme18I GGWCC 4 cut(s) 118, 301, 863, 1406
BmgT120I GGNCC 4 cut(s) 118, 301, 863, 1406
BmiI GGNNCC 4 cut(s) 247, 302, 303, 829
BmrFI CCNGG 3 cut(s) 151, 629, 1084
BmrI ACTGGG 2 cut(s) 214, 1153
BmsI GCATC 3 cut(s) 127, 305, 327
BmuI ACTGGG 2 cut(s) 214, 1153
BoxI GACNNNNGTC 1 cut(s) 1014
BpmI CTGGAG 1 cut(s) 1302
Bpu14I TTCGAA 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 1084
BsaAI YACGTR 1 cut(s) 1497
BsaJI CCNNGG 1 cut(s) 547
BsaWI WCCGGW 1 cut(s) 1228
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 297, 1403
Bse1I ACTGG 6 cut(s) 75, 220, 286, 590, 764, 1148
Bse3DI GCAATG 1 cut(s) 1260
BseBI CCWGG 2 cut(s) 151, 629
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 848, 1393
BseLI CCNNNNNNNGG 3 cut(s) 81, 297, 1403
BseMI GCAATG 1 cut(s) 1260
BseMII CTCAG 3 cut(s) 80, 896, 1486
BseNI ACTGG 6 cut(s) 75, 220, 286, 590, 764, 1148
BseRI GAGGAG 1 cut(s) 1386
BseXI GCAGC 2 cut(s) 121, 297
BshFI GGCC 1 cut(s) 991
BshNI GGYRCC 2 cut(s) 245, 827
BsiHKAI GWGCWC 1 cut(s) 1429
BsiSI CCGG 3 cut(s) 429, 1083, 1229
BslFI GGGAC 3 cut(s) 287, 722, 859
BslI CCNNNNNNNGG 3 cut(s) 81, 297, 1403
BsmFI GGGAC 3 cut(s) 287, 722, 859
BsnI GGCC 1 cut(s) 991
Bsp119I TTCGAA 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 1429
Bsp143I GATC 6 cut(s) 175, 478, 658, 684, 724, 885
BspACI CCGC 1 cut(s) 819
BspANI GGCC 1 cut(s) 991
BspCNI CTCAG 3 cut(s) 81, 895, 1485
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 4 cut(s) 247, 302, 303, 829
BspPI GGATC 1 cut(s) 653
BspQI GCTCTTC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 452
BspT107I GGYRCC 2 cut(s) 245, 827
BsrDI GCAATG 1 cut(s) 1260
BsrI ACTGG 6 cut(s) 75, 220, 286, 590, 764, 1148
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 6 cut(s) 175, 478, 658, 684, 724, 885
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 2 cut(s) 151, 629
Bst4CI ACNGT 7 cut(s) 258, 810, 1034, 1253, 1326, 1360, 1453
Bst6I CTCTTC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 1497
BstBI TTCGAA 1 cut(s) 452
BstC8I GCNNGC 3 cut(s) 361, 915, 919
BstDEI CTNAG 4 cut(s) 89, 882, 1367, 1472
BstENI CCTNNNNNAGG 1 cut(s) 1401
BstF5I GGATG 2 cut(s) 848, 1393
BstKTI GATC 6 cut(s) 178, 481, 661, 687, 727, 888
BstMBI GATC 6 cut(s) 175, 478, 658, 684, 724, 885
BstMWI GCNNNNNNNGC 3 cut(s) 369, 438, 902
BstNI CCWGG 2 cut(s) 151, 629
BstPAI GACNNNNGTC 1 cut(s) 1014
BstSCI CCNGG 3 cut(s) 149, 627, 1082
BstSFI CTRYAG 2 cut(s) 801, 1154
BstSNI TACGTA 1 cut(s) 1497
BstV1I GCAGC 2 cut(s) 121, 297
BstXI CCANNNNNNTGG 2 cut(s) 227, 899
BsuRI GGCC 1 cut(s) 991
BtsCI GGATG 2 cut(s) 848, 1393
BtsIMutI CAGTG 5 cut(s) 82, 279, 597, 1071, 1356
Cac8I GCNNGC 3 cut(s) 361, 915, 919
CciI TCATGA 1 cut(s) 655
Cfr13I GGNCC 4 cut(s) 118, 301, 863, 1406
CsiI ACCWGGT 1 cut(s) 149
Csp6I GTAC 5 cut(s) 14, 259, 986, 1119, 1327
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 5 cut(s) 604, 656, 893, 1012, 1270
CviQI GTAC 5 cut(s) 14, 259, 986, 1119, 1327
DdeI CTNAG 4 cut(s) 89, 882, 1367, 1472
DpnI GATC 6 cut(s) 177, 480, 660, 686, 726, 887
DpnII GATC 6 cut(s) 175, 478, 658, 684, 724, 885
DraIII CACNNNGTG 1 cut(s) 1453
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 1427
Eco105I TACGTA 1 cut(s) 1497
Eco130I CCWWGG 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 1429
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 4 cut(s) 118, 301, 863, 1406
Eco53kI GAGCTC 1 cut(s) 1427
Eco57I CTGAAG 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 1427
EcoNI CCTNNNNNAGG 1 cut(s) 1401
EcoO109I RGGNCCY 2 cut(s) 301, 1406
EcoRII CCWGG 2 cut(s) 149, 627
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 547
EcoT22I ATGCAT 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 1429
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 5 cut(s) 607, 659, 896, 1015, 1273
FaqI GGGAC 3 cut(s) 287, 722, 859
FatI CATG 5 cut(s) 603, 655, 892, 1011, 1269
FauI CCCGC 1 cut(s) 812
FauNDI CATATG 1 cut(s) 621
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 1 cut(s) 1140
Fnu4HI GCNGC 2 cut(s) 110, 286
FokI GGATG 2 cut(s) 835, 1400
FriOI GRGCYC 1 cut(s) 1429
Fsp4HI GCNGC 2 cut(s) 110, 286
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 110, 286
GsuI CTGGAG 1 cut(s) 1302
HaeIII GGCC 1 cut(s) 991
HapII CCGG 3 cut(s) 429, 1083, 1229
Hin1II CATG 5 cut(s) 607, 659, 896, 1015, 1273
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HindIII AAGCTT 1 cut(s) 1217
HinfI GANTC 7 cut(s) 144, 510, 543, 839, 1061, 1091, 1482
HpaII CCGG 3 cut(s) 429, 1083, 1229
HphI GGTGA 5 cut(s) 115, 139, 590, 692, 734
Hpy166II GTNNAC 3 cut(s) 1009, 1141, 1249
Hpy188I TCNGA 3 cut(s) 201, 885, 1041
Hpy188III TCNNGA 6 cut(s) 212, 312, 482, 563, 656, 1319
Hpy8I GTNNAC 3 cut(s) 1009, 1141, 1249
HpyAV CCTTC 4 cut(s) 4, 500, 862, 1315
HpyCH4III ACNGT 7 cut(s) 258, 810, 1034, 1253, 1326, 1360, 1453
HpyCH4IV ACGT 1 cut(s) 1496
HpyCH4V TGCA 7 cut(s) 26, 140, 318, 399, 610, 791, 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 438, 902
HpyF3I CTNAG 4 cut(s) 89, 882, 1367, 1472
HpySE526I ACGT 1 cut(s) 1496
Hsp92II CATG 5 cut(s) 607, 659, 896, 1015, 1273
KflI GGGWCCC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 6 cut(s) 175, 478, 658, 684, 724, 885
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 5 cut(s) 293, 902, 1358, 1424, 1439
Lsp1109I GCAGC 2 cut(s) 121, 297
LweI GCATC 3 cut(s) 127, 305, 327
MabI ACCWGGT 1 cut(s) 149
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 1496
MaeIII GTNAC 2 cut(s) 153, 755
MalI GATC 6 cut(s) 177, 480, 660, 686, 726, 887
MboI GATC 6 cut(s) 175, 478, 658, 684, 724, 885
MboII GAAGA 3 cut(s) 155, 300, 1355
MfeI CAATTG 1 cut(s) 1290
MhlI GDGCHC 1 cut(s) 1429
MlyI GAGTC 4 cut(s) 138, 552, 1070, 1100
MmeI TCCRAC 4 cut(s) 210, 686, 754, 890
Mph1103I ATGCAT 1 cut(s) 320
MseI TTAA 6 cut(s) 131, 180, 524, 600, 1161, 1335
MslI CAYNNNNRTG 3 cut(s) 590, 592, 732
MspI CCGG 3 cut(s) 429, 1083, 1229
MspR9I CCNGG 3 cut(s) 151, 629, 1084
MunI CAATTG 1 cut(s) 1290
MvaI CCWGG 2 cut(s) 151, 629
MwoI GCNNNNNNNGC 3 cut(s) 369, 438, 902
NciI CCSGG 1 cut(s) 1084
NdeI CATATG 1 cut(s) 621
NdeII GATC 6 cut(s) 175, 478, 658, 684, 724, 885
NlaIII CATG 5 cut(s) 607, 659, 896, 1015, 1273
NlaIV GGNNCC 4 cut(s) 247, 302, 303, 829
NmuCI GTSAC 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 320
NspV TTCGAA 1 cut(s) 452
OliI CACNNNNGTG 2 cut(s) 590, 592
PagI TCATGA 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 510, 839, 1482
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 2 cut(s) 111, 287
PleI GAGTC 4 cut(s) 138, 551, 1069, 1099
PpsI GAGTC 4 cut(s) 138, 551, 1069, 1099
Ppu21I YACGTR 1 cut(s) 1497
PpuMI RGGWCCY 2 cut(s) 301, 1406
PshAI GACNNNNGTC 1 cut(s) 1014
Psp124BI GAGCTC 1 cut(s) 1429
Psp5II RGGWCCY 2 cut(s) 301, 1406
Psp6I CCWGG 2 cut(s) 149, 627
PspGI CCWGG 2 cut(s) 149, 627
PspN4I GGNNCC 4 cut(s) 247, 302, 303, 829
PspPI GGNCC 4 cut(s) 118, 301, 863, 1406
PspPPI RGGWCCY 2 cut(s) 301, 1406
PsrI GAACNNNNNNTAC 2 cut(s) 1314, 1346
RsaI GTAC 5 cut(s) 15, 260, 987, 1120, 1328
RsaNI GTAC 5 cut(s) 14, 259, 986, 1119, 1327
RseI CAYNNNNRTG 3 cut(s) 590, 592, 732
SacI GAGCTC 1 cut(s) 1429
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 6 cut(s) 131, 180, 524, 600, 1161, 1335
SatI GCNGC 2 cut(s) 110, 286
Sau3AI GATC 6 cut(s) 175, 478, 658, 684, 724, 885
Sau96I GGNCC 4 cut(s) 118, 301, 863, 1406
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 4 cut(s) 138, 552, 1070, 1100
ScrFI CCNGG 3 cut(s) 151, 629, 1084
SduI GDGCHC 1 cut(s) 1429
SexAI ACCWGGT 1 cut(s) 149
SfaNI GCATC 3 cut(s) 127, 305, 327
SfcI CTRYAG 2 cut(s) 801, 1154
SfuI TTCGAA 1 cut(s) 452
SinI GGWCC 4 cut(s) 118, 301, 863, 1406
SmiMI CAYNNNNRTG 3 cut(s) 590, 592, 732
SnaBI TACGTA 1 cut(s) 1497
SsiI CCGC 1 cut(s) 819
SspI AATATT 2 cut(s) 971, 1188
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 1429
StyD4I CCNGG 3 cut(s) 149, 627, 1082
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 7 cut(s) 258, 810, 1034, 1253, 1326, 1360, 1453
TaiI ACGT 1 cut(s) 1499
TaqI TCGA 4 cut(s) 422, 452, 668, 1101
TatI WGTACW 2 cut(s) 258, 1326
TfiI GAWTC 3 cut(s) 510, 839, 1482
Tru1I TTAA 6 cut(s) 131, 180, 524, 600, 1161, 1335
Tru9I TTAA 6 cut(s) 131, 180, 524, 600, 1161, 1335
TscAI CASTG 5 cut(s) 82, 286, 597, 1071, 1363
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 2 cut(s) 109, 285
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 332, 1119, 1258, 1272
TspRI CASTG 5 cut(s) 82, 286, 597, 1071, 1363
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 4 cut(s) 118, 301, 863, 1406
XagI CCTNNNNNAGG 1 cut(s) 1401
XapI RAATTY 4 cut(s) 402, 485, 633, 955
XmiI GTMKAC 1 cut(s) 1140
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.